Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g18840 Schrenkiella parvula HOM05D006407 ORTHO05D008079 2.2e-213 745.3 382 100.0
Thhalv10004357m.g Eutrema salsugineum HOM05D006407 ORTHO05D008079 3.5e-190 668.3 398 89.4
C09p04840 Brassica napus HOM05D006407 ORTHO05D008079 7.8e-190 667.2 397 88.9
AT5G48470 Arabidopsis thaliana HOM05D006407 ORTHO05D008079 1.1e-188 663.3 398 87.2
BcaC04g23774 Brassica carinata HOM05D006407 ORTHO05D008079 1.5e-188 662.9 397 88.2
BolC9t53411H Brassica oleracea HOM05D006407 ORTHO05D008079 1.5e-188 662.9 397 88.2
BcaB04g19579 Brassica carinata HOM05D006407 ORTHO05D008079 2.5e-188 662.1 397 87.7
CARHR183610 Cardamine hirsuta HOM05D006407 ORTHO05D008079 2.5e-188 662.1 398 87.7
A09p04530 Brassica napus HOM05D006407 ORTHO05D008079 3.3e-188 661.8 397 88.2
Carub.0008s0805 Capsella rubella HOM05D006407 ORTHO05D008079 5.6e-188 661.0 399 87.7
BraA09t36088Z Brassica rapa HOM05D006407 ORTHO05D008079 1.2e-187 659.8 397 87.9
AL8G21320 Arabidopsis lyrata HOM05D006407 ORTHO05D008079 1.8e-186 656.0 398 87.4
Aa31sc527G10 Aethionema arabicum HOM05D006407 ORTHO05D008079 1.0e-173 613.6 392 83.2
THA.LOC104802645 Tarenaya hassleriana HOM05D006407 ORTHO05D008079 5.2e-170 601.3 400 80.2
Gorai.N003300 Gossypium raimondii HOM05D006407 ORTHO05D008079 5.4e-151 538.1 335 83.0
Manes.12G054200 Manihot esculenta HOM05D006407 ORTHO05D008079 1.2e-150 537.0 327 85.3
Cpa.g.sc8.72 Carica papaya HOM05D006407 ORTHO05D008079 3.5e-150 535.4 319 86.2
Gohir.A07G159200 Gossypium hirsutum HOM05D006407 ORTHO05D008079 6.0e-150 534.6 335 82.7
Cfa010568 Carpinus fangiana HOM05D006407 ORTHO05D008079 1.1e-148 530.4 378 75.4
Haze_03500 Corylus avellana HOM05D006407 ORTHO05D008079 1.1e-148 530.4 321 84.7
Thecc.01G211000 Theobroma cacao HOM05D006407 ORTHO05D008079 1.5e-148 530.0 377 74.8
CiPaw.14G043600 Carya illinoinensis HOM05D006407 ORTHO05D008079 2.5e-148 529.3 317 85.2
Dinv28811 Davidia involucrata HOM05D006407 ORTHO05D008079 5.6e-148 528.1 335 81.2
CSS0036527 Camellia sinensis var. sinensis HOM05D006407 ORTHO05D008079 3.1e-146 522.3 386 72.5
GSVIVG01006226001 Vitis vinifera HOM05D006407 ORTHO05D008079 5.3e-146 521.5 334 80.5
Actinidia30017 Actinidia chinensis HOM05D006407 ORTHO05D008079 6.9e-146 521.2 335 81.8
Ah.11g051020 Amaranthus hybridus HOM05D006407 ORTHO05D008079 1.5e-145 520.0 318 83.3
CSS0030734 Camellia sinensis var. sinensis HOM05D006407 ORTHO05D008079 1.5e-145 520.0 374 73.8
FAN15G1719 Fragaria x ananassa HOM05D006407 ORTHO05D008079 1.5e-145 520.0 397 70.0
FAN27G2095 Fragaria x ananassa HOM05D006407 ORTHO05D008079 2.0e-145 519.6 395 70.9
FAN27G3088 Fragaria x ananassa HOM05D006407 ORTHO05D008079 2.0e-145 519.6 395 70.9
FvH4_2g17800 Fragaria vesca HOM05D006407 ORTHO05D008079 2.6e-145 519.2 395 71.1
CANSAT01G1280 Cannabis sativa HOM05D006407 ORTHO05D008079 5.8e-145 518.1 317 83.9
FAN24G2889 Fragaria x ananassa HOM05D006407 ORTHO05D008079 7.6e-145 517.7 395 70.9
Eucgr.H00725 Eucalyptus grandis HOM05D006407 ORTHO05D008079 1.0e-144 517.3 317 83.3
RcHm_v2.0_Chr6g0282821 Rosa chinensis HOM05D006407 ORTHO05D008079 1.0e-144 517.3 403 69.5
QL09p046404 Quercus lobata HOM05D006407 ORTHO05D008079 1.3e-144 516.9 316 83.5
Aqoxy2G03962 Aquilegia oxysepala HOM05D006407 ORTHO05D008079 2.9e-144 515.8 363 76.0
Sc17g0001660 Simmondsia chinensis HOM05D006407 ORTHO05D008079 3.8e-144 515.4 326 81.9
Potri.002G251400 Populus trichocarpa HOM05D006407 ORTHO05D008079 1.1e-143 513.8 331 78.9
TAR636G1997 Trochodendron aralioides HOM05D006407 ORTHO05D008079 1.9e-143 513.1 365 73.4
TWI18G0256 Tripterygium wilfordii HOM05D006407 ORTHO05D008079 3.2e-143 512.3 328 79.6
PGR083G0415 Punica granatum HOM05D006407 ORTHO05D008079 9.3e-143 510.8 319 82.8
CsaV3_7G026830 Cucumis sativus L. HOM05D006407 ORTHO05D008079 3.5e-142 508.8 336 76.8
TWI36G1400 Tripterygium wilfordii HOM05D006407 ORTHO05D008079 3.5e-142 508.8 318 82.7
Hma1.2p1_0161F.1_g071410 Hydrangea macrophylla HOM05D006407 ORTHO05D008079 1.3e-141 506.9 332 79.2
MSTRG.18495 Avicennia marina HOM05D006407 ORTHO05D008079 2.3e-141 506.1 324 80.6
Prupe.8G190300 Prunus persica HOM05D006407 ORTHO05D008079 3.0e-141 505.8 331 79.5
Peaxi162Scf00335g00087 Petunia axillaris HOM05D006407 ORTHO05D008079 8.7e-141 504.2 330 78.8
ClCG09G008210 Citrullus lanatus HOM05D006407 ORTHO05D008079 1.1e-140 503.8 336 76.5
Oeu057833.1 Olea europaea HOM05D006407 ORTHO05D008079 1.1e-140 503.8 317 81.4
PSO017G7241 Papaver somniferum HOM05D006407 ORTHO05D008079 1.1e-140 503.8 332 79.2
Cc01_g16130 Coffea canephora HOM05D006407 ORTHO05D008079 4.3e-140 501.9 335 76.7
EL10Ac5g10625 Beta vulgaris HOM05D006407 ORTHO05D008079 5.7e-140 501.5 372 73.7
Sed0008140 Sechium edule HOM05D006407 ORTHO05D008079 7.4e-140 501.1 389 69.2
Ciclev10015489m.g Citrus clementina HOM05D006407 ORTHO05D008079 3.7e-139 498.8 321 80.4
MD10G1151900 Malus domestica HOM05D006407 ORTHO05D008079 3.7e-139 498.8 384 70.3
PSO675G1275 Papaver somniferum HOM05D006407 ORTHO05D008079 3.7e-139 498.8 383 71.0
AUR62008121 Chenopodium quinoa HOM05D006407 ORTHO05D008079 4.0e-138 495.4 395 68.9
Psat6g036520 Pisum sativum HOM05D006407 ORTHO05D008079 2.6e-137 492.7 361 72.6
Sopen09g019480 Solanum pennellii HOM05D006407 ORTHO05D008079 2.6e-137 492.7 315 80.3
Gohir.D07G167200 Gossypium hirsutum HOM05D006407 ORTHO05D008079 1.3e-136 490.3 335 78.2
Hund02795 Selenicereus undatus HOM05D006407 ORTHO05D008079 1.7e-136 490.0 331 77.9
Solyc09g056160.4 Solanum lycopersicum HOM05D006407 ORTHO05D008079 2.2e-136 489.6 335 76.1
PGSC0003DMG400013943 Solanum tuberosum HOM05D006407 ORTHO05D008079 3.8e-136 488.8 315 79.7
Migut.D00736 Erythranthe guttata HOM05D006407 ORTHO05D008079 2.5e-135 486.1 311 81.4
vmacro02816 Vaccinium macrocarpon HOM05D006407 ORTHO05D008079 9.3e-135 484.2 365 70.1
ECA247G2281 Erigeron canadensis HOM05D006407 ORTHO05D008079 1.2e-134 483.8 314 79.0
HanXRQChr08g0231421 Helianthus annuus HOM05D006407 ORTHO05D008079 1.0e-133 480.7 325 77.5
Rhsim13G0052700 Rhododendron simsii HOM05D006407 ORTHO05D008079 2.3e-133 479.6 303 79.5
Medtr1g007490 Medicago truncatula HOM05D006407 ORTHO05D008079 6.7e-133 478.0 325 76.9
Lsat_1_v5_gn_9_16300 Lactuca sativa HOM05D006407 ORTHO05D008079 8.7e-133 477.6 326 76.4
Lj1g0005258 Lotus japonicus HOM05D006407 ORTHO05D008079 1.1e-132 477.2 326 76.1
COL.COLO4_26571 Corchorus olitorius HOM05D006407 ORTHO05D008079 4.3e-132 475.3 337 75.4
HPP92_024258 Vanilla planifolia HOM05D006407 ORTHO05D008079 2.2e-131 473.0 318 75.8
Glyma.03G089700 Glycine max HOM05D006407 ORTHO05D008079 3.7e-131 472.2 312 77.9
Glyma.16G083300 Glycine max HOM05D006407 ORTHO05D008079 6.3e-131 471.5 312 77.9
Lalb_Chr07g0194511 Lupinus albus HOM05D006407 ORTHO05D008079 5.3e-130 468.4 312 78.5
arahy.Tifrunner.gnm1.ann1.FHDW0K Arachis hypogaea HOM05D006407 ORTHO05D008079 1.5e-129 466.8 333 74.2
arahy.Tifrunner.gnm1.ann1.Q8L9VW Arachis hypogaea HOM05D006407 ORTHO05D008079 3.4e-129 465.7 333 73.9
Lj1C101T0 Lonicera japonica HOM05D006407 ORTHO05D008079 1.0e-128 464.2 317 77.9
Ca_12772_v3 Cicer arietinum L. HOM05D006407 ORTHO05D008079 1.1e-127 460.7 297 79.8
unitig_64.g29771 Utricularia gibba HOM05D006407 ORTHO05D008079 1.1e-127 460.7 319 73.7
Phvul.008G108300 Phaseolus vulgaris HOM05D006407 ORTHO05D008079 3.2e-127 459.1 324 72.2
Zm00001eb169280 Zea mays HOM05D006407 ORTHO05D008079 1.6e-126 456.8 318 71.4
SalBow6G2639 Salvia bowleyana HOM05D006407 ORTHO05D008079 1.0e-125 454.1 293 78.8
ATR0686G167 Amborella trichopoda HOM05D006407 ORTHO05D008079 1.4e-125 453.8 329 69.9
Nitab4.5_0003859g0020 Nicotiana tabacum HOM05D001236 ORTHO05D001090 9.7e-124 447.6 301 77.4
Nitab4.5_0000038g0130 Nicotiana tabacum HOM05D006407 ORTHO05D008079 3.7e-123 445.7 352 69.0
Sabra02G0191100 Salix brachista HOM05D006407 ORTHO05D008079 2.2e-120 436.4 305 73.4
SGA_v2.0_scaffold29G12072 Striga asiatica HOM05D006407 ORTHO05D008079 1.4e-119 433.7 385 64.2
Atru.chr6.3545 Acer truncatum HOM05D006407 ORTHO05D008079 5.9e-113 411.8 259 81.5
Os11g0425300 Oryza sativa ssp. japonica HOM05D006407 ORTHO05D008079 1.7e-112 410.2 287 72.8
VMungo1383G2551 Vigna mungo HOM05D006407 ORTHO05D008079 2.6e-108 396.4 324 65.1
SEGI_39839 Sequoiadendron giganteum HOM05D006407 ORTHO05D008079 1.2e-102 377.5 319 62.1
CDE09G0438 Ceratophyllum demersum HOM05D006407 ORTHO05D008079 1.2e-100 370.9 239 78.7
BolC7t44437H Brassica oleracea HOM05D006407 ORTHO05D008079 1.8e-98 363.6 367 65.1
C07p39170 Brassica napus HOM05D006407 ORTHO05D008079 1.4e-93 347.4 354 63.8
BcaC06g30794 Brassica carinata HOM05D006407 ORTHO05D008079 1.2e-89 334.3 479 48.4
unitig_62.g23866 Utricularia gibba HOM05D006407 ORTHO05D008079 5.6e-79 298.9 343 53.6
HPP92_024262 Vanilla planifolia HOM05D006407 ORTHO05D008079 2.1e-78 297.0 201 74.1
Mapoly0125s0038 Marchantia polymorpha HOM05D006407 ORTHO05D008079 2.8e-78 296.6 351 45.3
SMO367G1011 Selaginella moellendorffii HOM05D006407 ORTHO05D008079 2.3e-77 293.5 317 49.5
Duzib138G1048 Durio zibethinus HOM05D006407 ORTHO05D008079 1.7e-75 287.3 365 49.3
Pp3c19_21450 Physcomitrium patens HOM05D006407 ORTHO05D008079 8.3e-75 285.0 326 46.6
Nn1g08257 Nelumbo nucifera HOM05D006407 ORTHO05D008079 1.1e-71 274.6 161 85.7
AagrBONN_evm.TU.Sc2ySwM_368.2294 Anthoceros agrestis HOM05D006407 ORTHO05D008079 1.9e-71 273.9 273 53.1
Nn1g08232 Nelumbo nucifera HOM05D006407 ORTHO05D008079 3.5e-65 253.1 158 80.4
MBI11_g07407_MAGBIO Magnolia biondii HOM05D006407 ORTHO05D003073 8.1e-62 241.9 163 76.7
AUR62028699 Chenopodium quinoa HOM05D006407 ORTHO05D008079 1.5e-55 221.1 143 79.7
BraA06t26831Z Brassica rapa HOM05D006407 ORTHO05D008079 2.0e-52 210.7 128 86.7
A06p39160 Brassica napus HOM05D006407 ORTHO05D008079 3.5e-49 199.9 177 66.1
DCAR_004768 Daucus carota HOM05D006407 ORTHO05D008079 4.3e-47 193.0 157 68.8
Migut.D00733 Erythranthe guttata HOM05D006407 ORTHO05D008079 3.5e-41 173.3 110 81.8
CBR_g12604 Chara braunii HOM05D001724 ORTHO05D007284 1.3e-32 144.8 325 32.9
CDE02G0544 Ceratophyllum demersum HOM05D006407 ORTHO05D008079 3.9e-24 116.7 82 70.7
Lsat_1_v5_gn_9_60420 Lactuca sativa HOM05D001780 ORTHO05D008079 1.6e-14 84.7 46 87.0
arahy.Tifrunner.gnm1.ann1.91BFZF Arachis hypogaea HOM05D006407 ORTHO05D008079 6.3e-14 82.8 81 56.8
Oeu032606.1 Olea europaea HOM05D006407 ORTHO05D008079 3.1e-13 80.5 48 81.2
Cre09.g393800 Chlamydomonas reinhardtii HOM05D006407 ORTHO05D008079 4.5e-12 76.6 276 28.6
MD05G1159200 Malus domestica HOM05D006407 ORTHO05D008079 5.9e-12 76.3 49 75.5
MCO11G451 Micromonas commoda HOM05D006407 ORTHO05D008079 5.9e-12 76.3 265 26.8
arahy.Tifrunner.gnm1.ann1.6HQ4SR Arachis hypogaea HOM05D006407 ORTHO05D008079 1.0e-08 65.5 74 52.7


User provided reference genes

Program Settings