Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g18470 Schrenkiella parvula HOM05D005285 ORTHO05D006829 1.4e-212 742.7 360 100.0
Thhalv10004473m.g Eutrema salsugineum HOM05D005285 ORTHO05D006829 4.6e-200 701.0 360 94.2
BcaC06g30830 Brassica carinata HOM05D005285 ORTHO05D006829 6.6e-199 697.2 360 93.9
A06p39410 Brassica napus HOM05D005285 ORTHO05D006829 3.3e-198 694.9 360 93.9
BraA06t26856Z Brassica rapa HOM05D005285 ORTHO05D006829 3.3e-198 694.9 360 93.9
BolC7t44405H Brassica oleracea HOM05D005285 ORTHO05D006829 1.2e-197 693.0 360 93.6
C07p38860 Brassica napus HOM05D005285 ORTHO05D006829 4.7e-197 691.0 360 93.6
AL8G20280 Arabidopsis lyrata HOM05D005285 ORTHO05D006829 2.6e-195 685.3 360 92.2
Aa31LG11G7560 Aethionema arabicum HOM05D005285 ORTHO05D006829 4.4e-195 684.5 363 90.9
Carub.0008s0757 Capsella rubella HOM05D005285 ORTHO05D006829 4.9e-194 681.0 360 91.9
CARHR184290 Cardamine hirsuta HOM05D005285 ORTHO05D006829 4.6e-192 674.5 360 90.6
THA.LOC104819060 Tarenaya hassleriana HOM05D005285 ORTHO05D006829 1.4e-188 662.9 363 87.9
AT5G48020 Arabidopsis thaliana HOM05D005285 ORTHO05D006829 4.0e-188 661.4 360 88.6
PGR044G0372 Punica granatum HOM05D005285 ORTHO05D006829 1.6e-173 612.8 366 80.9
Thecc.01G414500 Theobroma cacao HOM05D005285 ORTHO05D006829 2.8e-173 612.1 362 82.0
Duzib268G1126 Durio zibethinus HOM05D005285 ORTHO05D006829 1.2e-171 606.7 363 81.3
Gorai.004G035700 Gossypium raimondii HOM05D005285 ORTHO05D006829 1.2e-171 606.7 364 81.0
Cpa.g.sc234.2 Carica papaya HOM05D005285 ORTHO05D006829 1.5e-171 606.3 361 81.4
Gohir.A08G026900 Gossypium hirsutum HOM05D005285 ORTHO05D006829 1.5e-171 606.3 365 81.4
Lalb_Chr03g0033921 Lupinus albus HOM05D005285 ORTHO05D006829 2.6e-171 605.5 355 82.0
COL.COLO4_23903 Corchorus olitorius HOM05D005285 ORTHO05D006829 3.4e-171 605.1 350 82.0
Gohir.D08G037700 Gossypium hirsutum HOM05D005285 ORTHO05D006829 1.7e-170 602.8 365 80.8
Manes.10G147800 Manihot esculenta HOM05D005285 ORTHO05D006829 1.7e-170 602.8 369 78.9
Actinidia20684 Actinidia chinensis HOM05D005285 ORTHO05D006829 4.2e-169 598.2 358 79.6
TWI09G0675 Tripterygium wilfordii HOM05D005285 ORTHO05D006829 7.1e-169 597.4 359 79.9
GSVIVG01032048001 Vitis vinifera HOM05D005285 ORTHO05D006829 7.1e-169 597.4 363 79.3
Dinv09380 Davidia involucrata HOM05D005285 ORTHO05D006829 9.3e-169 597.0 360 79.7
DCAR_029637 Daucus carota HOM05D005285 ORTHO05D006829 1.2e-168 596.7 354 81.1
Potri.001G271100 Populus trichocarpa HOM05D005285 ORTHO05D006829 1.2e-168 596.7 369 78.6
Haze_03242 Corylus avellana HOM05D005285 ORTHO05D006829 2.7e-168 595.5 360 80.0
Cfa010729 Carpinus fangiana HOM05D005285 ORTHO05D006829 4.6e-168 594.7 360 80.3
Ciclev10031943m.g Citrus clementina HOM05D005285 ORTHO05D006829 4.6e-168 594.7 360 79.7
Lj9A629T99 Lonicera japonica HOM05D005285 ORTHO05D006829 4.6e-168 594.7 354 80.8
FAN03G1002 Fragaria x ananassa HOM05D005285 ORTHO05D006829 1.3e-167 593.2 354 80.8
QL04p004838 Quercus lobata HOM05D005285 ORTHO05D006829 1.8e-167 592.8 355 79.4
TAR636G1692 Trochodendron aralioides HOM05D005285 ORTHO05D006829 2.3e-167 592.4 361 78.1
ClCG10G012540 Citrullus lanatus HOM05D005285 ORTHO05D006829 1.1e-166 590.1 360 78.3
Peaxi162Scf00042g00510 Petunia axillaris HOM05D005285 ORTHO05D006829 1.1e-166 590.1 354 80.2
Rhsim01G0131200 Rhododendron simsii HOM05D005285 ORTHO05D006829 1.5e-166 589.7 367 77.1
Eucgr.J01257 Eucalyptus grandis HOM05D005285 ORTHO05D006829 3.3e-166 588.6 367 77.9
CSS0013341 Camellia sinensis var. sinensis HOM05D005285 ORTHO05D006829 4.3e-166 588.2 359 79.1
TWI53G0546 Tripterygium wilfordii HOM05D005285 ORTHO05D006829 4.3e-166 588.2 363 78.5
FvH4_7g00610 Fragaria vesca HOM05D005285 ORTHO05D006829 5.7e-166 587.8 354 80.8
Sed0014745 Sechium edule HOM05D005285 ORTHO05D006829 5.7e-166 587.8 358 78.5
FAN10G3755 Fragaria x ananassa HOM05D005285 ORTHO05D006829 7.4e-166 587.4 354 80.8
CANSAT21G0587 Cannabis sativa HOM05D005285 ORTHO05D006829 9.6e-166 587.0 360 79.7
FAN06G0391 Fragaria x ananassa HOM05D005285 ORTHO05D006829 1.3e-165 586.6 354 80.8
MBI04_g14265_MAGBIO Magnolia biondii HOM05D005285 ORTHO05D006829 1.3e-165 586.6 356 78.4
Psat4g195080 Pisum sativum HOM05D005285 ORTHO05D006829 2.1e-165 585.9 356 79.8
VMungo1127G2059 Vigna mungo HOM05D005285 ORTHO05D006829 2.1e-165 585.9 355 80.3
Phvul.011G213800 Phaseolus vulgaris HOM05D005285 ORTHO05D006829 2.8e-165 585.5 355 80.0
MELO3C023957.2 Cucumis melo HOM05D005285 ORTHO05D006829 8.2e-165 583.9 359 78.6
Migut.B01343 Erythranthe guttata HOM05D005285 ORTHO05D006829 1.1e-164 583.6 357 77.3
FAN01G1197 Fragaria x ananassa HOM05D005285 ORTHO05D006829 1.1e-164 583.6 354 80.2
Nn7g36086 Nelumbo nucifera HOM05D005285 ORTHO05D006829 1.1e-164 583.6 362 77.6
RcHm_v2.0_Chr1g0314801 Rosa chinensis HOM05D005285 ORTHO05D006829 1.4e-164 583.2 354 80.2
Glyma.12G239400 Glycine max HOM05D005285 ORTHO05D006829 1.8e-164 582.8 355 80.6
MD02G1316300 Malus domestica HOM05D005285 ORTHO05D006829 1.8e-164 582.8 354 80.5
Nitab4.5_0002012g0040 Nicotiana tabacum HOM05D005285 ORTHO05D006829 1.8e-164 582.8 354 79.4
Hma1.2p1_1011F.1_g247500 Hydrangea macrophylla HOM05D005285 ORTHO05D006829 2.4e-164 582.4 385 75.3
MD07G1005600 Malus domestica HOM05D005285 ORTHO05D006829 2.4e-164 582.4 354 79.4
Sopen10g011740 Solanum pennellii HOM05D005285 ORTHO05D006829 2.4e-164 582.4 354 80.2
CsaV3_3G032330 Cucumis sativus L. HOM05D005285 ORTHO05D006829 6.9e-164 580.9 363 76.6
Oeu064272.1 Olea europaea HOM05D005285 ORTHO05D006829 6.9e-164 580.9 356 78.4
Cc02_g27470 Coffea canephora HOM05D005285 ORTHO05D006829 1.5e-163 579.7 359 78.3
Lsat_1_v5_gn_1_109141 Lactuca sativa HOM05D005285 ORTHO05D006829 1.5e-163 579.7 356 77.8
Nitab4.5_0000050g0030 Nicotiana tabacum HOM05D005285 ORTHO05D006829 2.0e-163 579.3 353 78.8
SGA_v2.0_scaffold646G53323 Striga asiatica HOM05D005285 ORTHO05D006829 4.5e-163 578.2 354 78.5
Ca_23856_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 5.8e-163 577.8 355 79.4
Lj3g0011351 Lotus japonicus HOM05D005285 ORTHO05D006829 5.8e-163 577.8 355 78.3
SalBow5G3096 Salvia bowleyana HOM05D005285 ORTHO05D006829 7.6e-163 577.4 359 77.2
EL10Ac2g04308 Beta vulgaris HOM05D005285 ORTHO05D006829 2.2e-162 575.9 356 77.5
SalBow5G3836 Salvia bowleyana HOM05D005285 ORTHO05D006829 2.2e-162 575.9 359 76.9
Eucgr.J01254 Eucalyptus grandis HOM05D005285 ORTHO05D006829 3.8e-162 575.1 367 76.0
Eucgr.J01253 Eucalyptus grandis HOM05D005285 ORTHO05D006829 4.9e-162 574.7 367 75.7
Eucgr.J01256 Eucalyptus grandis HOM05D005285 ORTHO05D006829 4.9e-162 574.7 367 75.7
MSTRG.20606 Avicennia marina HOM05D005285 ORTHO05D006829 6.5e-162 574.3 359 77.4
PSO339G1127 Papaver somniferum HOM05D005285 ORTHO05D006829 6.5e-162 574.3 365 74.8
Medtr8g036165 Medicago truncatula HOM05D005285 ORTHO05D006829 1.4e-161 573.2 355 78.0
arahy.Tifrunner.gnm1.ann1.DICK3U Arachis hypogaea HOM05D005285 ORTHO05D006829 1.9e-161 572.8 355 78.0
ECA248G0026 Erigeron canadensis HOM05D005285 ORTHO05D006829 2.7e-160 568.9 354 77.7
Os02g0717500 Oryza sativa ssp. japonica HOM05D005285 ORTHO05D006829 3.5e-160 568.5 358 76.0
PSO384G1382 Papaver somniferum HOM05D005285 ORTHO05D006829 6.1e-160 567.8 365 74.0
Hund03676 Selenicereus undatus HOM05D005285 ORTHO05D006829 1.3e-159 566.6 346 78.9
Aqoxy2G00109 Aquilegia oxysepala HOM05D005285 ORTHO05D006829 1.8e-159 566.2 362 74.6
AUR62023050 Chenopodium quinoa HOM05D005285 ORTHO05D006829 3.0e-159 565.5 353 77.3
Oeu039102.1 Olea europaea HOM05D005285 ORTHO05D006829 6.7e-159 564.3 359 76.0
Zm00001eb189240 Zea mays HOM05D005285 ORTHO05D006829 1.1e-158 563.5 357 76.5
CDE04G1667 Ceratophyllum demersum HOM05D005285 ORTHO05D006829 2.5e-158 562.4 362 72.7
Hund03675 Selenicereus undatus HOM05D005285 ORTHO05D006829 3.3e-158 562.0 391 72.1
unitig_26.g9596 Utricularia gibba HOM05D005285 ORTHO05D006829 7.4e-158 560.8 360 75.3
Sabra16G0166500 Salix brachista HOM05D005285 ORTHO05D006829 3.8e-154 548.5 440 64.5
FAN01G1198 Fragaria x ananassa HOM05D005285 ORTHO05D006829 1.1e-153 547.0 446 63.9
vmacro21170 Vaccinium macrocarpon HOM05D005285 ORTHO05D006829 1.9e-153 546.2 414 67.6
ATR0605G013 Amborella trichopoda HOM05D005285 ORTHO05D006829 9.4e-153 543.9 365 72.9
AUR62009369 Chenopodium quinoa HOM05D005285 ORTHO05D006829 3.9e-151 538.5 330 78.5
Lj9C629T1 Lonicera japonica HOM05D005285 ORTHO05D006829 5.1e-151 538.1 352 73.0
ECA248G2079 Erigeron canadensis HOM05D005285 ORTHO05D006829 7.4e-150 534.3 358 70.9
HanXRQChr11g0330581 Helianthus annuus HOM05D005285 ORTHO05D006829 4.8e-149 531.6 358 70.4
Lsat_1_v5_gn_1_111020 Lactuca sativa HOM05D005285 ORTHO05D006829 1.1e-148 530.4 358 70.1
ECA248G2524 Erigeron canadensis HOM05D005285 ORTHO05D006829 6.9e-148 527.7 354 70.1
SEGI_06931 Sequoiadendron giganteum HOM05D005285 ORTHO05D006829 2.2e-146 522.7 373 67.3
SGA_v2.0_scaffold646G53324 Striga asiatica HOM05D005285 ORTHO05D006829 2.2e-146 522.7 456 58.3
Atru.chr11.2010 Acer truncatum HOM05D005285 ORTHO05D006829 6.5e-146 521.2 350 71.4
QL04p004878 Quercus lobata HOM05D005285 ORTHO05D006829 3.6e-144 515.4 360 69.7
AagrBONN_evm.TU.Sc2ySwM_228.3236 Anthoceros agrestis HOM05D005285 ORTHO05D006829 3.0e-143 512.3 357 67.8
QL04p004868 Quercus lobata HOM05D005285 ORTHO05D006829 5.1e-143 511.5 360 68.3
HanXRQChr11g0330561 Helianthus annuus HOM05D005285 ORTHO05D006829 1.5e-142 510.0 352 68.2
Mapoly0019s0106 Marchantia polymorpha HOM05D005285 ORTHO05D006829 7.4e-142 507.7 360 65.3
SMO364G0792 Selaginella moellendorffii HOM05D005285 ORTHO05D006829 2.2e-141 506.1 353 66.6
Atru.chr11.2632 Acer truncatum HOM05D005285 ORTHO05D006829 1.1e-140 503.8 385 68.3
QL04p004849 Quercus lobata HOM05D005285 ORTHO05D006829 1.1e-140 503.8 363 65.3
SHI04065 Sapria himalayana HOM05D000259 ORTHO05D000155 2.1e-136 489.6 520 51.7
Prupe.2G008000 Prunus persica HOM05D005285 ORTHO05D006829 6.1e-136 488.0 270 86.3
Prupe.2G008200 Prunus persica HOM05D005285 ORTHO05D006829 9.1e-124 447.6 251 84.1
Pp3c17_23530 Physcomitrium patens HOM05D005285 ORTHO05D006829 2.7e-123 446.0 382 57.6
Sc11g0009350 Simmondsia chinensis HOM05D005285 ORTHO05D006829 1.1e-121 440.7 270 77.4
Sed0008744 Sechium edule HOM05D005285 ORTHO05D006829 8.0e-120 434.5 344 65.4
HPP92_022786 Vanilla planifolia HOM05D005285 ORTHO05D006829 3.3e-113 412.5 277 72.9
Lsat_1_v5_gn_1_72821 Lactuca sativa HOM05D005285 ORTHO05D006829 2.7e-107 392.9 345 57.4
Ca_24082_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 1.6e-104 383.6 345 54.8
Pp3c14_26250 Physcomitrium patens HOM05D005285 ORTHO05D006829 3.4e-102 375.9 255 68.6
Cre13.g586400 Chlamydomonas reinhardtii HOM05D005285 ORTHO05D006829 1.4e-100 370.5 377 48.5
HanXRQChr11g0330591 Helianthus annuus HOM05D005285 ORTHO05D006829 4.9e-85 318.9 223 68.2
Solyc10g037950.2 Solanum lycopersicum HOM05D005285 ORTHO05D006829 3.2e-84 316.2 197 77.7
arahy.Tifrunner.gnm1.ann1.A7HRCY Arachis hypogaea HOM05D005285 ORTHO05D006829 6.6e-82 308.5 270 60.0
TPR.G21737 Trifolium pratense HOM05D005285 ORTHO05D006829 2.4e-76 290.0 163 85.3
HanXRQChr01g0017351 Helianthus annuus HOM05D005285 ORTHO05D006829 4.6e-75 285.8 178 74.2
Solyc10g037960.3 Solanum lycopersicum HOM05D005285 ORTHO05D006829 1.6e-72 277.3 192 72.4
Eucgr.L03705 Eucalyptus grandis HOM05D005285 ORTHO05D006829 4.8e-72 275.8 182 74.2
TPR.G21746 Trifolium pratense HOM05D005285 ORTHO05D006829 8.1e-72 275.0 180 72.8
Ca_24079_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 2.9e-69 266.5 347 44.1
Cpa.g.sc2760.1 Carica papaya HOM05D005285 ORTHO05D006829 3.0e-58 229.9 174 60.9
Rhsim06G0016300 Rhododendron simsii HOM05D005285 ORTHO05D006829 7.1e-52 208.8 118 83.9
HanXRQChr11g0330601 Helianthus annuus HOM05D005285 ORTHO05D006829 3.5e-43 179.9 106 77.4
Peaxi162Scf00451g00621 Petunia axillaris HOM05D005285 ORTHO05D006829 1.1e-41 174.9 167 56.9
Actinidia21565 Actinidia chinensis HOM05D005285 ORTHO05D006829 9.4e-36 155.2 103 76.7
Oeu039103.1 Olea europaea HOM05D005285 ORTHO05D008854 3.9e-34 149.8 91 80.2
Atru.ctg794.7 Acer truncatum HOM05D005285 ORTHO05D037890 5.1e-26 122.9 177 42.9
Oeu039101.1 Olea europaea HOM05D000288 ORTHO05D000173 1.1e-23 115.2 88 64.8
vmacro21176 Vaccinium macrocarpon HOM05D005285 ORTHO05D006829 4.2e-20 103.2 112 52.7
TPR.G13313 Trifolium pratense HOM05D005285 ORTHO05D413460 4.7e-19 99.8 77 63.6
CDE07G0090 Ceratophyllum demersum HOM05D000288 ORTHO05D000173 3.0e-18 97.1 232 29.3
Atru.chr13.2215 Acer truncatum HOM05D005285 ORTHO05D037890 5.2e-18 96.3 55 76.4
arahy.Tifrunner.gnm1.ann1.J91U4H Arachis hypogaea HOM05D000001 ORTHO05D004533 6.3e-16 89.4 62 62.9
Lsat_1_v5_gn_0_6420 Lactuca sativa HOM05D002112 ORTHO05D007960 3.5e-14 83.6 83 53.0
VMungo1127G1344 Vigna mungo HOM05D000839 ORTHO05D000664 1.7e-13 81.3 96 50.0
arahy.Tifrunner.gnm1.ann1.43BKZS Arachis hypogaea HOM05D000001 ORTHO05D000003 8.5e-13 79.0 67 55.2
TPR.G1074 Trifolium pratense HOM05D005285 ORTHO05D411165 5.7e-09 66.2 74 50.0
arahy.Tifrunner.gnm1.ann1.81AB3J Arachis hypogaea HOM05D000001 ORTHO05D084391 1.2e-06 58.5 43 58.1
Lsat_1_v5_gn_9_64201 Lactuca sativa HOM05D000310 ORTHO05D005377 3.5e-06 57.0 33 78.8
Oeu000043.1 Olea europaea HOM05D000206 ORTHO05D000232 7.7e-06 55.8 136 27.2


User provided reference genes

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