Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g18420 Schrenkiella parvula HOM05D004039 ORTHO05D004573 1.4e-78 296.6 187 100.0
Thhalv10005412m.g Eutrema salsugineum HOM05D004039 ORTHO05D004573 1.1e-72 276.9 187 80.7
CARHR291780 Cardamine hirsuta HOM05D004039 ORTHO05D004573 3.6e-71 271.9 187 83.4
BcaB07g29998 Brassica carinata HOM05D004039 ORTHO05D004573 2.0e-69 266.2 187 77.0
AT5G47920 Arabidopsis thaliana HOM05D004039 ORTHO05D004573 3.3e-69 265.4 188 82.4
BraA02t08705Z Brassica rapa HOM05D004039 ORTHO05D004573 1.3e-68 263.5 187 75.4
A02p37190 Brassica napus HOM05D004039 ORTHO05D004573 4.8e-68 261.5 187 75.4
BcaC03g17621 Brassica carinata HOM05D004039 ORTHO05D004573 2.4e-67 259.2 187 75.9
C02p56210 Brassica napus HOM05D004039 ORTHO05D004573 2.4e-67 259.2 187 75.9
BolC2t11677H Brassica oleracea HOM05D004039 ORTHO05D004573 2.4e-67 259.2 187 75.9
BcaC04g23799 Brassica carinata HOM05D004039 ORTHO05D004573 2.6e-66 255.8 187 75.4
BolC9t53384H Brassica oleracea HOM05D004039 ORTHO05D004573 2.9e-65 252.3 187 74.3
BcaB04g19545 Brassica carinata HOM05D004039 ORTHO05D004573 3.8e-65 251.9 187 73.8
AL8G19920 Arabidopsis lyrata HOM05D004039 ORTHO05D004573 4.2e-64 248.4 189 79.4
Carub.0008s0748 Capsella rubella HOM05D004039 ORTHO05D004573 3.6e-63 245.4 193 79.8
BcaC06g30835 Brassica carinata HOM05D004039 ORTHO05D004573 6.1e-63 244.6 187 73.3
C09p04550 Brassica napus HOM05D004039 ORTHO05D004573 8.0e-63 244.2 187 73.3
A06p39450 Brassica napus HOM05D004039 ORTHO05D004573 1.4e-62 243.4 187 78.1
BraA06t26860Z Brassica rapa HOM05D004039 ORTHO05D004573 1.4e-62 243.4 187 78.1
BraA09t36066Z Brassica rapa HOM05D004039 ORTHO05D004573 4.0e-62 241.9 187 72.2
C07p38820 Brassica napus HOM05D004039 ORTHO05D004573 2.0e-61 239.6 187 77.0
BolC7t44401H Brassica oleracea HOM05D004039 ORTHO05D004573 2.8e-60 235.7 187 73.8
A09p04290 Brassica napus HOM05D004039 ORTHO05D004573 2.6e-58 229.2 177 72.9
Aa31LG3G14220 Aethionema arabicum HOM05D004039 ORTHO05D004573 2.9e-57 225.7 187 67.4
THA.LOC104827510 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 9.1e-43 177.6 190 55.3
THA.LOC104801433 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 6.1e-39 164.9 188 53.2
Manes.08G099400 Manihot esculenta HOM05D004039 ORTHO05D004573 6.8e-38 161.4 190 51.6
RcHm_v2.0_Chr4g0428421 Rosa chinensis HOM05D004039 ORTHO05D004573 1.5e-37 160.2 195 48.7
Atru.chr12.1473 Acer truncatum HOM05D004039 ORTHO05D004573 2.2e-36 156.4 187 50.8
FvH4_4g22190 Fragaria vesca HOM05D004039 ORTHO05D004573 6.4e-36 154.8 189 49.2
FAN17G1354 Fragaria x ananassa HOM05D004039 ORTHO05D004573 1.1e-35 154.1 189 48.7
FAN07G2708 Fragaria x ananassa HOM05D004039 ORTHO05D004573 1.4e-35 153.7 189 49.2
TWI75G0895 Tripterygium wilfordii HOM05D004039 ORTHO05D004573 2.4e-35 152.9 159 58.5
Prupe.1G211600 Prunus persica HOM05D004039 ORTHO05D004573 5.4e-35 151.8 194 47.4
Ciclev10030001m.g Citrus clementina HOM05D004039 ORTHO05D004573 7.0e-35 151.4 197 49.2
Eucgr.B03568 Eucalyptus grandis HOM05D004039 ORTHO05D004573 2.7e-34 149.4 193 48.2
Cfa009471 Carpinus fangiana HOM05D004039 ORTHO05D004573 4.6e-34 148.7 186 53.8
MD13G1134000 Malus domestica HOM05D004039 ORTHO05D004573 5.9e-34 148.3 196 46.9
MELO3C026747.2 Cucumis melo HOM05D004039 ORTHO05D004573 1.7e-33 146.7 198 48.5
MD16G1144600 Malus domestica HOM05D004039 ORTHO05D004573 1.7e-33 146.7 199 47.2
ClCG10G013010 Citrullus lanatus HOM05D004039 ORTHO05D004573 2.3e-33 146.4 195 51.8
Haze_12527 Corylus avellana HOM05D004039 ORTHO05D004573 2.3e-33 146.4 184 50.0
CSS0018669 Camellia sinensis var. sinensis HOM05D004039 ORTHO05D004573 2.5e-32 142.9 176 51.1
QL03p048351 Quercus lobata HOM05D004039 ORTHO05D004573 5.6e-32 141.7 192 47.9
Hma1.2p1_0738F.1_g210940 Hydrangea macrophylla HOM05D004039 ORTHO05D004573 9.5e-32 141.0 164 58.5
PGSC0003DMG400011591 Solanum tuberosum HOM05D004039 ORTHO05D004573 1.2e-31 140.6 173 51.4
CiPaw.05G098500 Carya illinoinensis HOM05D004039 ORTHO05D004573 1.6e-31 140.2 186 47.3
COL.COLO4_07108 Corchorus olitorius HOM05D004039 ORTHO05D004573 1.6e-31 140.2 155 54.8
CANSAT64G1067 Cannabis sativa HOM05D004039 ORTHO05D004573 3.6e-31 139.0 184 52.7
Cpa.g.sc686.1 Carica papaya HOM05D004039 ORTHO05D004573 4.7e-31 138.7 186 46.8
CiPaw.06G111200 Carya illinoinensis HOM05D004039 ORTHO05D004573 6.2e-31 138.3 200 47.0
GSVIVG01032947001 Vitis vinifera HOM05D004039 ORTHO05D004573 8.9e-30 134.4 196 46.4
Sopen09g034240 Solanum pennellii HOM05D004039 ORTHO05D004573 1.5e-29 133.7 174 50.6
Potri.003G160300 Populus trichocarpa HOM05D004039 ORTHO05D004573 2.6e-29 132.9 193 45.1
CAN.G1588.13 Capsicum annuum HOM05D004039 ORTHO05D004573 3.4e-29 132.5 173 48.6
Thecc.01G239800 Theobroma cacao HOM05D004039 ORTHO05D004573 3.4e-29 132.5 155 55.5
PGR102G1502 Punica granatum HOM05D004039 ORTHO05D004573 9.8e-29 131.0 159 52.2
Solyc09g091270.3 Solanum lycopersicum HOM05D004039 ORTHO05D004573 9.8e-29 131.0 173 50.3
HanXRQChr10g0319941 Helianthus annuus HOM05D004039 ORTHO05D004573 1.3e-28 130.6 196 44.4
Sed0004494 Sechium edule HOM05D004039 ORTHO05D004573 2.2e-28 129.8 164 49.4
Thecc.04G052000 Theobroma cacao HOM05D004039 ORTHO05D004573 2.2e-28 129.8 208 41.8
Sc11g0000030 Simmondsia chinensis HOM05D004039 ORTHO05D004573 2.9e-28 129.4 198 45.5
HPP92_025084 Vanilla planifolia HOM05D004039 ORTHO05D004573 1.1e-27 127.5 193 44.0
EL10Ac2g04246 Beta vulgaris HOM05D004039 ORTHO05D004573 2.4e-27 126.3 212 39.6
Gorai.006G002900 Gossypium raimondii HOM05D004039 ORTHO05D004573 2.4e-27 126.3 158 53.2
Oeu010264.1 Olea europaea HOM05D004039 ORTHO05D004573 2.4e-27 126.3 168 49.4
VMungo1302G0001 Vigna mungo HOM05D004039 ORTHO05D004573 2.4e-27 126.3 203 41.9
Manes.11G073200 Manihot esculenta HOM05D004039 ORTHO05D004573 4.1e-27 125.6 189 44.4
Nitab4.5_0019080g0010 Nicotiana tabacum HOM05D004039 ORTHO05D004573 4.1e-27 125.6 187 45.5
Gohir.D09G002400 Gossypium hirsutum HOM05D004039 ORTHO05D004573 5.4e-27 125.2 158 53.2
Sabra03G0116500 Salix brachista HOM05D004039 ORTHO05D004573 5.4e-27 125.2 192 43.8
MBI11_g23197_MAGBIO Magnolia biondii HOM05D004039 ORTHO05D004573 9.2e-27 124.4 193 45.6
QL02p068241 Quercus lobata HOM05D004039 ORTHO05D004573 9.2e-27 124.4 206 41.3
Sabra01G0049400 Salix brachista HOM05D004039 ORTHO05D004573 9.2e-27 124.4 196 43.9
Haze_14987 Corylus avellana HOM05D004039 ORTHO05D004573 1.2e-26 124.0 214 39.7
Gohir.D12G146700 Gossypium hirsutum HOM05D004039 ORTHO05D004573 2.7e-26 122.9 206 41.3
Gohir.A12G141800 Gossypium hirsutum HOM05D004039 ORTHO05D004573 3.5e-26 122.5 206 40.8
TAR374G0420 Trochodendron aralioides HOM05D004039 ORTHO05D004573 3.5e-26 122.5 158 48.1
Duzib205G0448 Durio zibethinus HOM05D001017 ORTHO05D001025 4.6e-26 122.1 158 51.3
Gorai.008G157900 Gossypium raimondii HOM05D004039 ORTHO05D004573 1.0e-25 120.9 210 40.5
Gohir.A09G002600 Gossypium hirsutum HOM05D004039 ORTHO05D004573 1.3e-25 120.6 158 51.9
Lalb_Chr14g0364131 Lupinus albus HOM05D004039 ORTHO05D004573 1.7e-25 120.2 207 40.6
Sabra14G0105500 Salix brachista HOM05D000032 ORTHO05D009383 2.3e-25 119.8 208 40.4
COL.COLO4_13404 Corchorus olitorius HOM05D004039 ORTHO05D004573 3.0e-25 119.4 177 43.5
Potri.014G140000 Populus trichocarpa HOM05D004039 ORTHO05D004573 3.9e-25 119.0 210 40.5
Peaxi162Scf00047g00153 Petunia axillaris HOM05D004039 ORTHO05D004573 8.6e-25 117.9 163 49.1
Lalb_Chr24g0402991 Lupinus albus HOM05D004039 ORTHO05D004573 1.9e-24 116.7 212 39.2
ATR0582G327 Amborella trichopoda HOM05D004039 ORTHO05D004573 2.5e-24 116.3 186 41.9
Cpa.g.sc70.36 Carica papaya HOM05D004039 ORTHO05D004573 3.3e-24 115.9 186 42.5
Phvul.001G098500 Phaseolus vulgaris HOM05D004039 ORTHO05D004573 3.3e-24 115.9 204 39.7
Dinv06937 Davidia involucrata HOM05D004039 ORTHO05D004573 7.3e-24 114.8 153 46.4
AUR62031493 Chenopodium quinoa HOM05D004039 ORTHO05D004573 9.5e-24 114.4 210 37.6
AUR62012365 Chenopodium quinoa HOM05D004039 ORTHO05D004573 1.2e-23 114.0 210 38.1
PGR042G1501 Punica granatum HOM05D004039 ORTHO05D004573 1.2e-23 114.0 227 40.1
SHI11395 Sapria himalayana HOM05D004039 ORTHO05D004573 1.2e-23 114.0 167 44.9
PSO017G5432 Papaver somniferum HOM05D004039 ORTHO05D004573 1.6e-23 113.6 154 50.0
Ah.16g104320 Amaranthus hybridus HOM05D004039 ORTHO05D004573 2.1e-23 113.2 210 37.6
Duzib187G1305 Durio zibethinus HOM05D004039 ORTHO05D004573 6.2e-23 111.7 219 37.4
CsaV3_3G032870 Cucumis sativus L. HOM05D004039 ORTHO05D004573 8.1e-23 111.3 122 54.9
Gohir.D03G099900 Gossypium hirsutum HOM05D004039 ORTHO05D004573 8.1e-23 111.3 152 48.7
Gorai.003G105000 Gossypium raimondii HOM05D004039 ORTHO05D004573 8.1e-23 111.3 152 48.7
PSO478G3045 Papaver somniferum HOM05D004039 ORTHO05D004573 1.1e-22 110.9 154 48.7
Gohir.A03G073400 Gossypium hirsutum HOM05D004039 ORTHO05D004573 2.3e-22 109.8 152 48.0
Cc02_g30640 Coffea canephora HOM05D004039 ORTHO05D004573 3.1e-22 109.4 209 35.9
Psat3g089920 Pisum sativum HOM05D004039 ORTHO05D004573 5.2e-22 108.6 208 37.5
GSVIVG01001118001 Vitis vinifera HOM05D004039 ORTHO05D011171 5.2e-22 108.6 90 64.4
Ciclev10016691m.g Citrus clementina HOM05D004039 ORTHO05D004573 6.8e-22 108.2 214 41.6
Manes.04G096800 Manihot esculenta HOM05D004039 ORTHO05D004573 6.8e-22 108.2 163 42.3
Glyma.19G106500 Glycine max HOM05D004039 ORTHO05D004573 1.2e-21 107.5 184 42.4
DCAR_031611 Daucus carota HOM05D004039 ORTHO05D004573 2.9e-20 102.8 159 44.0
Eucgr.I01568 Eucalyptus grandis HOM05D004039 ORTHO05D004573 2.9e-20 102.8 155 50.3
Medtr7g084740 Medicago truncatula HOM05D004039 ORTHO05D004573 2.9e-20 102.8 225 36.9
Cfa007136 Carpinus fangiana HOM05D004039 ORTHO05D004573 3.7e-20 102.4 219 37.4
BcaC04g24246 Brassica carinata HOM05D004039 ORTHO05D004573 4.9e-20 102.1 185 37.8
Psat3g090520 Pisum sativum HOM05D004039 ORTHO05D004573 6.4e-20 101.7 183 39.3
AT5G13880 Arabidopsis thaliana HOM05D004039 ORTHO05D004573 8.3e-20 101.3 189 37.6
Glyma.16G045200 Glycine max HOM05D004039 ORTHO05D004573 8.3e-20 101.3 184 40.2
TWI12G1264 Tripterygium wilfordii HOM05D004039 ORTHO05D004573 8.3e-20 101.3 164 47.0
Rhsim12G0091100 Rhododendron simsii HOM05D004039 ORTHO05D004573 1.9e-19 100.1 182 41.8
Eucgr.G01911 Eucalyptus grandis HOM05D004039 ORTHO05D004573 3.2e-19 99.4 203 36.5
Atru.chr6.2731 Acer truncatum HOM05D004039 ORTHO05D004573 4.1e-19 99.0 215 37.2
Lj1g0002386 Lotus japonicus HOM05D004039 ORTHO05D004573 4.1e-19 99.0 197 37.6
Ca_08235_v3 Cicer arietinum L. HOM05D004039 ORTHO05D004573 1.2e-18 97.4 215 34.4
BraA10t44513Z Brassica rapa HOM05D004039 ORTHO05D004573 2.1e-18 96.7 189 37.0
Migut.K01132 Erythranthe guttata HOM05D004039 ORTHO05D004573 7.8e-18 94.7 202 33.7
Nn3g16207 Nelumbo nucifera HOM05D004039 ORTHO05D004573 7.8e-18 94.7 195 35.4
Nitab4.5_0002182g0030 Nicotiana tabacum HOM05D004039 ORTHO05D004573 7.8e-18 94.7 103 53.4
Carub.0006s1207 Capsella rubella HOM05D004039 ORTHO05D004573 1.0e-17 94.4 189 36.0
BcaC04g19071 Brassica carinata HOM05D004039 ORTHO05D004573 1.3e-17 94.0 188 35.6
C09p63220 Brassica napus HOM05D004039 ORTHO05D004573 1.3e-17 94.0 188 35.6
BolC9t59158H Brassica oleracea HOM05D004039 ORTHO05D004573 1.3e-17 94.0 188 35.6
Psat3g090560 Pisum sativum HOM05D004039 ORTHO05D004573 1.3e-17 94.0 246 31.7
SGA_v2.0_scaffold258G45761 Striga asiatica HOM05D004039 ORTHO05D004573 2.3e-17 93.2 82 59.8
MD17G1003900 Malus domestica HOM05D004039 ORTHO05D004573 3.0e-17 92.8 201 33.8
C03p07240 Brassica napus HOM05D004039 ORTHO05D004573 6.6e-17 91.7 157 40.8
BolC3t13225H Brassica oleracea HOM05D004039 ORTHO05D004573 6.6e-17 91.7 157 40.8
AL6G24520 Arabidopsis lyrata HOM05D004039 ORTHO05D004573 8.6e-17 91.3 194 35.1
A10p24480 Brassica napus HOM05D004039 ORTHO05D004573 8.6e-17 91.3 188 35.1
TPR.G31659 Trifolium pratense HOM05D004039 ORTHO05D004573 8.6e-17 91.3 214 36.9
ECA248G3450 Erigeron canadensis HOM05D000009 ORTHO05D000008 1.1e-16 90.9 76 63.2
Zm00001eb085640 Zea mays HOM05D004039 ORTHO05D004573 1.1e-16 90.9 209 40.7
Thhalv10014767m.g Eutrema salsugineum HOM05D004039 ORTHO05D004573 1.9e-16 90.1 192 35.9
A03p06250 Brassica napus HOM05D004039 ORTHO05D004573 2.5e-16 89.7 156 38.5
BraA03t09957Z Brassica rapa HOM05D004039 ORTHO05D004573 2.5e-16 89.7 156 38.5
CARHR199550 Cardamine hirsuta HOM05D004039 ORTHO05D004573 2.5e-16 89.7 152 38.8
CDE05G3127 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 2.5e-16 89.7 171 38.0
Sp6g30120 Schrenkiella parvula HOM05D004039 ORTHO05D004573 3.3e-16 89.4 192 36.5
MBI07_g42011_MAGBIO Magnolia biondii HOM05D004039 ORTHO05D004573 4.3e-16 89.0 214 32.2
Medtr7g084720 Medicago truncatula HOM05D004039 ORTHO05D004573 4.3e-16 89.0 160 36.9
Medtr7g084710 Medicago truncatula HOM05D004039 ORTHO05D004573 1.2e-15 87.4 212 35.8
Phvul.004G067800 Phaseolus vulgaris HOM05D004039 ORTHO05D004573 2.1e-15 86.7 190 35.8
BcaB01g05331 Brassica carinata HOM05D004039 ORTHO05D004573 6.2e-15 85.1 162 40.1
Actinidia33989 Actinidia chinensis HOM05D004548 ORTHO05D005402 1.1e-14 84.3 182 40.1
TPR.G31663 Trifolium pratense HOM05D004039 ORTHO05D004573 1.1e-14 84.3 120 44.2
Os04g0382400 Oryza sativa ssp. japonica HOM05D004039 ORTHO05D004573 1.4e-14 84.0 199 38.2
Lalb_Chr21g0317001 Lupinus albus HOM05D004039 ORTHO05D004573 2.3e-14 83.2 178 35.4
Glyma.02G068200 Glycine max HOM05D004039 ORTHO05D004573 8.9e-14 81.3 74 59.5
Aqoxy3G01771 Aquilegia oxysepala HOM05D004039 ORTHO05D004573 1.4e-11 73.9 72 59.7
CDE02G1703 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 1.4e-11 73.9 156 31.4
SEGI_35194 Sequoiadendron giganteum HOM05D004039 ORTHO05D004573 1.9e-11 73.6 157 36.9
Zm00001eb181000 Zea mays HOM05D004039 ORTHO05D004573 1.9e-11 73.6 203 31.0
CDE06G1383 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 2.1e-10 70.1 185 29.7
PGR119G1683 Punica granatum HOM05D004039 ORTHO05D004573 2.7e-10 69.7 75 48.0
Sed0011010 Sechium edule HOM05D004039 ORTHO05D004573 2.7e-10 69.7 71 54.9
Prupe.3G315300 Prunus persica HOM05D004039 ORTHO05D004573 3.5e-10 69.3 223 35.4
ClCG05G012460 Citrullus lanatus HOM05D004039 ORTHO05D004573 1.0e-09 67.8 58 62.1
MELO3C014757.2 Cucumis melo HOM05D004039 ORTHO05D004573 1.0e-09 67.8 56 62.5
Zm00001eb318100 Zea mays HOM05D015480 ORTHO05D019326 1.0e-09 67.8 168 28.6
CsaV3_3G020070 Cucumis sativus L. HOM05D004039 ORTHO05D004573 1.3e-09 67.4 56 62.5
Rhsim08G0037500 Rhododendron simsii HOM05D004039 ORTHO05D000739 5.1e-09 65.5 97 47.4
CiPaw.14G093600 Carya illinoinensis HOM05D004039 ORTHO05D004573 6.6e-09 65.1 154 37.0
FAN12G1550 Fragaria x ananassa HOM05D004039 ORTHO05D004573 1.5e-08 63.9 109 39.4
Os02g0505500 Oryza sativa ssp. japonica HOM05D004039 ORTHO05D004573 1.9e-08 63.5 42 76.2
Ah.02g128730 Amaranthus hybridus HOM05D029470 ORTHO05D026515 4.0e-06 55.8 158 31.0
Oeu035281.1 Olea europaea HOM05D004039 ORTHO05D004573 6.8e-06 55.1 144 31.9


User provided reference genes

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