Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g18210 Schrenkiella parvula HOM05D009227 ORTHO05D009956 1.8e-64 249.2 133 100.0
BcaC06g30842 Brassica carinata HOM05D009227 ORTHO05D009956 1.3e-59 233.0 133 93.2
A06p39660 Brassica napus HOM05D009227 ORTHO05D009956 2.2e-51 205.7 133 85.0
BraA06t26881Z Brassica rapa HOM05D009227 ORTHO05D009956 2.2e-51 205.7 133 85.0
BcaC06g33727 Brassica carinata HOM05D009227 ORTHO05D009956 3.8e-51 204.9 133 84.2
C07p38630 Brassica napus HOM05D009227 ORTHO05D009956 3.8e-51 204.9 133 84.2
BolC7t44384H Brassica oleracea HOM05D009227 ORTHO05D009956 3.8e-51 204.9 133 84.2
Thhalv10005597m.g Eutrema salsugineum HOM05D009227 ORTHO05D009956 3.5e-44 181.8 107 86.0
Carub.0009s0002 Capsella rubella HOM05D009227 ORTHO05D009956 1.3e-43 179.9 134 76.9
AT3G30580 Arabidopsis thaliana HOM05D009227 ORTHO05D009956 3.2e-42 175.3 133 77.4
BcaB07g30061 Brassica carinata HOM05D009227 ORTHO05D009956 9.7e-39 163.7 91 92.3
BolC2t11666H Brassica oleracea HOM05D009227 ORTHO05D009956 2.7e-33 145.6 91 82.4
A02p37090 Brassica napus HOM05D009227 ORTHO05D009956 3.6e-33 145.2 91 82.4
BraA02t08695Z Brassica rapa HOM05D009227 ORTHO05D009956 3.6e-33 145.2 91 82.4
C02p56090 Brassica napus HOM05D009227 ORTHO05D009956 5.7e-31 137.9 133 63.2
THA.LOC104805540 Tarenaya hassleriana HOM05D009227 ORTHO05D009956 5.5e-26 121.3 145 56.6
Aa31LG9G16880 Aethionema arabicum HOM05D009227 ORTHO05D009956 1.4e-24 116.7 134 59.7
AL7G51640 Arabidopsis lyrata HOM05D009227 ORTHO05D009956 1.4e-21 106.7 112 55.4
CARHR264020 Cardamine hirsuta HOM05D009227 ORTHO05D009956 2.7e-20 102.4 97 60.8
Carub.0007s3707 Capsella rubella HOM05D009227 ORTHO05D009956 4.5e-20 101.7 128 55.5
AT5G38790 Arabidopsis thaliana HOM05D009227 ORTHO05D009956 2.9e-19 99.0 99 56.6
SpUn1356_0010 Schrenkiella parvula HOM05D009227 ORTHO05D009956 2.1e-17 92.8 101 55.4
Thhalv10027989m.g Eutrema salsugineum HOM05D009227 ORTHO05D009956 2.3e-11 72.8 110 44.5
BcaC02g09668 Brassica carinata HOM05D009227 ORTHO05D009956 1.2e-09 67.0 129 43.4
C04p45370 Brassica napus HOM05D009227 ORTHO05D009956 1.2e-09 67.0 129 43.4
BolC4t26119H Brassica oleracea HOM05D009227 ORTHO05D009956 1.2e-09 67.0 129 43.4
BraA04t16832Z Brassica rapa HOM05D009227 ORTHO05D009956 1.6e-09 66.6 129 42.6
FAN02G0304 Fragaria x ananassa HOM05D008889 ORTHO05D009956 1.6e-09 66.6 129 45.0
FvH4_6g45950 Fragaria vesca HOM05D008889 ORTHO05D009956 4.7e-09 65.1 129 44.2
FAN14G5446 Fragaria x ananassa HOM05D008889 ORTHO05D009956 4.7e-09 65.1 129 44.2
A04p11640 Brassica napus HOM05D009227 ORTHO05D009956 6.1e-09 64.7 129 40.3
MD17G1069000 Malus domestica HOM05D008889 ORTHO05D009956 8.0e-09 64.3 128 45.3
RcHm_v2.0_Chr2g0164181 Rosa chinensis HOM05D008889 ORTHO05D009956 8.0e-09 64.3 128 43.8
FAN05G4365 Fragaria x ananassa HOM05D008889 ORTHO05D009956 1.0e-08 63.9 129 43.4
FAN09G2052 Fragaria x ananassa HOM05D008889 ORTHO05D009956 1.4e-08 63.5 129 43.4
Gorai.004G064000 Gossypium raimondii HOM05D009227 ORTHO05D009956 1.4e-08 63.5 69 58.0
BcaB06g27244 Brassica carinata HOM05D009227 ORTHO05D009956 2.3e-08 62.8 129 41.9
Gohir.D08G061900 Gossypium hirsutum HOM05D009227 ORTHO05D009956 4.0e-08 62.0 124 43.5
Potri.004G108840 Populus trichocarpa HOM05D008889 ORTHO05D009956 8.9e-08 60.8 76 48.7
unitig_744.g24288 Utricularia gibba HOM05D009227 ORTHO05D009956 1.2e-07 60.5 69 52.2
TPR.G3280 Trifolium pratense HOM05D008889 ORTHO05D009956 1.5e-07 60.1 134 44.0
QL02p063786 Quercus lobata HOM05D009227 ORTHO05D009956 3.4e-07 58.9 82 48.8
Duzib133G1477 Durio zibethinus HOM05D008889 ORTHO05D009956 5.8e-07 58.2 76 48.7
Manes.01G105700 Manihot esculenta HOM05D008889 ORTHO05D009956 5.8e-07 58.2 116 44.0
TWI60G1323 Tripterygium wilfordii HOM05D008889 ORTHO05D009956 7.5e-07 57.8 126 40.5
Ciclev10013380m.g Citrus clementina HOM05D008889 ORTHO05D009956 9.8e-07 57.4 124 42.7
Gohir.A08G052300 Gossypium hirsutum HOM05D008889 ORTHO05D009956 9.8e-07 57.4 124 42.7
Sed0012187 Sechium edule HOM05D008563 ORTHO05D009802 1.7e-06 56.6 74 50.0
Prupe.3G245600 Prunus persica HOM05D008889 ORTHO05D009956 2.2e-06 56.2 127 40.9
Sabra04G0073700 Salix brachista HOM05D008889 ORTHO05D009956 2.2e-06 56.2 76 48.7
Sabra17G0089900 Salix brachista HOM05D008889 ORTHO05D009956 2.2e-06 56.2 130 42.3
ECA246G0644 Erigeron canadensis HOM05D009227 ORTHO05D009956 2.9e-06 55.8 72 51.4
Glyma.04G157900 Glycine max HOM05D008563 ORTHO05D009956 4.9e-06 55.1 68 52.9
Thecc.04G112500 Theobroma cacao HOM05D008889 ORTHO05D009956 8.3e-06 54.3 74 48.6


User provided reference genes

Program Settings