Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g18130 Schrenkiella parvula HOM05D003991 ORTHO05D004883 0.0e+00 1510.4 790 100.0
Thhalv10003675m.g Eutrema salsugineum HOM05D003991 ORTHO05D004883 0.0e+00 1423.3 790 94.4
BcaC06g30850 Brassica carinata HOM05D003991 ORTHO05D004883 0.0e+00 1374.0 791 91.8
BcaC06g33715 Brassica carinata HOM05D003991 ORTHO05D004883 0.0e+00 1369.8 790 91.4
C07p38530 Brassica napus HOM05D003991 ORTHO05D004883 0.0e+00 1369.0 790 91.4
BolC7t44375H Brassica oleracea HOM05D003991 ORTHO05D004883 0.0e+00 1369.0 790 91.4
A06p39740 Brassica napus HOM05D003991 ORTHO05D004883 0.0e+00 1368.6 791 90.8
BraA06t26889Z Brassica rapa HOM05D003991 ORTHO05D004883 0.0e+00 1368.6 791 90.8
Aa31LG2G3750 Aethionema arabicum HOM05D003991 ORTHO05D004883 0.0e+00 1360.5 794 89.5
Carub.0007s3697 Capsella rubella HOM05D003991 ORTHO05D004883 0.0e+00 1245.0 786 83.6
C09p04400 Brassica napus HOM05D003991 ORTHO05D004883 0.0e+00 1244.6 792 84.1
AL7G51550 Arabidopsis lyrata HOM05D003991 ORTHO05D004883 0.0e+00 1242.3 786 83.6
AT5G38880 Arabidopsis thaliana HOM05D003991 ORTHO05D004883 0.0e+00 1241.1 786 83.6
BraA09t36055Z Brassica rapa HOM05D003991 ORTHO05D004883 0.0e+00 1224.2 790 82.4
BolC9t53370H Brassica oleracea HOM05D003991 ORTHO05D004883 0.0e+00 1222.6 790 83.2
Thhalv10027646m.g Eutrema salsugineum HOM05D003991 ORTHO05D004883 0.0e+00 1206.4 787 81.4
A09p04180 Brassica napus HOM05D003991 ORTHO05D004883 0.0e+00 1192.6 791 80.8
THA.LOC104822745 Tarenaya hassleriana HOM05D003991 ORTHO05D004883 0.0e+00 1187.6 792 80.7
BcaC04g23813 Brassica carinata HOM05D003991 ORTHO05D004883 0.0e+00 1161.4 792 80.1
Ciclev10011098m.g Citrus clementina HOM05D003991 ORTHO05D004883 0.0e+00 1139.4 785 76.1
CANSAT64G1645 Cannabis sativa HOM05D003991 ORTHO05D004883 0.0e+00 1138.6 793 75.2
TWI32G1311 Tripterygium wilfordii HOM05D003991 ORTHO05D004883 0.0e+00 1130.2 787 75.7
TWI34G0665 Tripterygium wilfordii HOM05D003991 ORTHO05D004883 0.0e+00 1119.4 790 74.7
Cpa.g.sc541.1 Carica papaya HOM05D003991 ORTHO05D004883 0.0e+00 1117.8 755 77.7
Duzib138G0045 Durio zibethinus HOM05D003991 ORTHO05D004883 0.0e+00 1113.6 803 73.3
CiPaw.03G082800 Carya illinoinensis HOM05D003991 ORTHO05D004883 0.0e+00 1110.1 767 75.4
Manes.01G103600 Manihot esculenta HOM05D003991 ORTHO05D004883 0.0e+00 1110.1 788 73.5
Manes.02G059600 Manihot esculenta HOM05D003991 ORTHO05D004883 0.0e+00 1110.1 788 74.2
Lj4A124G55 Lonicera japonica HOM05D003991 ORTHO05D004883 0.0e+00 1102.8 787 72.6
Gorai.001G207000 Gossypium raimondii HOM05D003991 ORTHO05D004883 0.0e+00 1102.4 794 73.6
Eucgr.I02064 Eucalyptus grandis HOM05D003991 ORTHO05D004883 0.0e+00 1101.7 777 74.0
Prupe.3G248800 Prunus persica HOM05D003991 ORTHO05D004883 0.0e+00 1100.5 783 74.3
Duzib133G0226 Durio zibethinus HOM05D003991 ORTHO05D004883 0.0e+00 1097.4 796 72.7
Cfa007697 Carpinus fangiana HOM05D003991 ORTHO05D004883 0.0e+00 1095.9 787 74.6
COL.COLO4_10252 Corchorus olitorius HOM05D003991 ORTHO05D004883 0.0e+00 1094.0 798 72.6
Atru.chr8.642 Acer truncatum HOM05D003991 ORTHO05D004883 0.0e+00 1091.3 784 74.2
MD17G1065900 Malus domestica HOM05D003991 ORTHO05D004883 0.0e+00 1090.1 784 73.7
Hma1.2p1_1837F.1_g304750 Hydrangea macrophylla HOM05D003991 ORTHO05D004883 0.0e+00 1088.2 802 72.4
Potri.017G100300 Populus trichocarpa HOM05D003991 ORTHO05D004883 0.0e+00 1087.0 792 73.4
Potri.004G114600 Populus trichocarpa HOM05D003991 ORTHO05D004883 0.0e+00 1084.3 792 72.7
VMungo1383G3466 Vigna mungo HOM05D003991 ORTHO05D004883 0.0e+00 1083.6 789 72.9
MD09G1074500 Malus domestica HOM05D003991 ORTHO05D004883 0.0e+00 1082.0 784 73.1
RcHm_v2.0_Chr2g0164851 Rosa chinensis HOM05D003991 ORTHO05D004883 0.0e+00 1080.5 785 73.8
Glyma.08G251400 Glycine max HOM05D003991 ORTHO05D004883 0.0e+00 1079.3 789 73.0
Glyma.18G274100 Glycine max HOM05D003991 ORTHO05D004883 0.0e+00 1078.2 789 73.0
Haze_14380 Corylus avellana HOM05D003991 ORTHO05D004883 0.0e+00 1076.6 860 69.1
MELO3C026296.2 Cucumis melo HOM05D003991 ORTHO05D004883 0.0e+00 1076.2 791 72.8
Ca_06908_v3 Cicer arietinum L. HOM05D003991 ORTHO05D004883 5.4e-312 1073.9 789 72.5
FAN05G5440 Fragaria x ananassa HOM05D003991 ORTHO05D004883 1.1e-311 1073.2 798 71.9
Phvul.008G026400 Phaseolus vulgaris HOM05D003991 ORTHO05D004883 1.1e-311 1073.2 789 72.5
FvH4_6g46350 Fragaria vesca HOM05D003991 ORTHO05D004883 1.1e-311 1072.8 783 72.8
FAN09G2010 Fragaria x ananassa HOM05D003991 ORTHO05D004883 1.6e-311 1072.4 783 72.7
TPR.G23393 Trifolium pratense HOM05D003991 ORTHO05D004883 3.8e-311 1071.2 787 71.5
vmacro18126 Vaccinium macrocarpon HOM05D003991 ORTHO05D004883 4.9e-311 1070.8 827 69.3
CsaV3_4G010070 Cucumis sativus L. HOM05D003991 ORTHO05D004883 6.5e-311 1070.5 790 72.3
PGR004G0075 Punica granatum HOM05D003991 ORTHO05D004883 1.4e-310 1069.3 776 72.6
CSS0001564 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 4.1e-310 1067.8 794 71.4
Sed0026923 Sechium edule HOM05D003991 ORTHO05D004883 2.6e-309 1065.1 788 71.6
Lalb_Chr10g0092711 Lupinus albus HOM05D003991 ORTHO05D004883 5.0e-308 1060.8 784 72.4
FAN14G3680 Fragaria x ananassa HOM05D003991 ORTHO05D004883 6.5e-308 1060.4 797 71.3
Lj1g0022443 Lotus japonicus HOM05D003991 ORTHO05D004883 4.2e-307 1057.7 783 71.9
TAR622G0714 Trochodendron aralioides HOM05D003991 ORTHO05D004883 1.6e-306 1055.8 792 71.0
DCAR_011017 Daucus carota HOM05D003991 ORTHO05D004883 2.7e-306 1055.0 786 70.4
ClCG07G016050 Citrullus lanatus HOM05D003991 ORTHO05D004883 8.0e-306 1053.5 834 68.5
Nn4g23516 Nelumbo nucifera HOM05D003991 ORTHO05D004883 9.8e-304 1046.6 794 70.3
Psat3g203280 Pisum sativum HOM05D003991 ORTHO05D004883 9.8e-304 1046.6 787 69.1
Lsat_1_v5_gn_3_96860 Lactuca sativa HOM05D003991 ORTHO05D004883 2.2e-303 1045.4 790 69.5
Medtr7g016900 Medicago truncatula HOM05D003991 ORTHO05D004883 8.3e-303 1043.5 784 70.7
FAN02G3988 Fragaria x ananassa HOM05D003991 ORTHO05D004883 9.1e-302 1040.0 797 70.1
HanXRQChr02g0043871 Helianthus annuus HOM05D003991 ORTHO05D004883 2.5e-299 1031.9 778 69.4
arahy.Tifrunner.gnm1.ann1.YA99EJ Arachis hypogaea HOM05D003991 ORTHO05D004883 4.0e-297 1024.6 787 70.0
Rhsim08G0077400 Rhododendron simsii HOM05D003991 ORTHO05D004883 1.5e-296 1022.7 812 68.2
MBI17_g07944_MAGBIO Magnolia biondii HOM05D003991 ORTHO05D004883 9.8e-296 1020.0 792 69.3
EL10Ac2g04440 Beta vulgaris HOM05D003991 ORTHO05D004883 2.2e-295 1018.8 793 68.2
Hund13674 Selenicereus undatus HOM05D003991 ORTHO05D004883 3.7e-295 1018.1 779 68.3
Nitab4.5_0000154g0150 Nicotiana tabacum HOM05D003991 ORTHO05D004883 7.0e-294 1013.8 780 69.4
BcaC04g23825 Brassica carinata HOM05D003991 ORTHO05D004883 9.1e-294 1013.4 645 84.3
SGA_v2.0_scaffold148G36448 Striga asiatica HOM05D003991 ORTHO05D004883 2.7e-293 1011.9 788 67.4
GSVIVG01036544001 Vitis vinifera HOM05D003991 ORTHO05D004883 3.5e-293 1011.5 660 78.9
Cc07_g04500 Coffea canephora HOM05D003991 ORTHO05D004883 1.3e-292 1009.6 800 68.4
Sopen03g010790 Solanum pennellii HOM05D003991 ORTHO05D004883 1.5e-291 1006.1 789 68.8
arahy.Tifrunner.gnm1.ann1.T6I3L8 Arachis hypogaea HOM05D003991 ORTHO05D004883 4.2e-291 1004.6 796 68.5
AUR62009479 Chenopodium quinoa HOM05D003991 ORTHO05D004883 5.5e-291 1004.2 785 67.8
MSTRG.2973 Avicennia marina HOM05D003991 ORTHO05D004883 1.0e-289 1000.0 787 66.6
TAR374G0063 Trochodendron aralioides HOM05D003991 ORTHO05D004883 2.3e-289 998.8 763 70.2
Peaxi162Scf01002g00121 Petunia axillaris HOM05D003991 ORTHO05D004883 8.9e-289 996.9 783 68.7
PSO063G1675 Papaver somniferum HOM05D003991 ORTHO05D004883 4.4e-288 994.6 796 66.3
PSO782G2666 Papaver somniferum HOM05D003991 ORTHO05D004883 7.5e-288 993.8 795 66.2
Sabra17G0086400 Salix brachista HOM05D003991 ORTHO05D004883 3.7e-287 991.5 887 63.1
CAN.G427.3 Capsicum annuum HOM05D003991 ORTHO05D004883 4.9e-287 991.1 791 67.4
AUR62023158 Chenopodium quinoa HOM05D003991 ORTHO05D004883 6.3e-287 990.7 787 67.1
SalBow1G2342 Salvia bowleyana HOM05D003991 ORTHO05D004883 3.3e-283 978.4 788 66.0
Solyc03g046590.3 Solanum lycopersicum HOM05D003991 ORTHO05D004883 2.1e-282 975.7 789 67.2
CiPaw.04G052100 Carya illinoinensis HOM05D003991 ORTHO05D004883 9.8e-280 966.8 785 68.0
ATR0605G126 Amborella trichopoda HOM05D003991 ORTHO05D004883 2.2e-279 965.7 789 65.4
Migut.O00382 Erythranthe guttata HOM05D003991 ORTHO05D004883 2.2e-279 965.7 788 65.1
Thecc.04G106400 Theobroma cacao HOM05D003991 ORTHO05D004883 6.4e-279 964.1 634 78.1
Ah.16g101030 Amaranthus hybridus HOM05D003991 ORTHO05D004883 1.6e-277 959.5 786 65.8
Gohir.A07G179600 Gossypium hirsutum HOM05D003991 ORTHO05D004883 4.6e-277 958.0 634 78.4
ECA246G2054 Erigeron canadensis HOM05D003991 ORTHO05D004883 1.5e-275 953.0 790 64.8
Gohir.D07G186400 Gossypium hirsutum HOM05D003991 ORTHO05D004883 3.3e-275 951.8 634 77.6
Lsat_1_v5_gn_2_90201 Lactuca sativa HOM05D003991 ORTHO05D004883 5.1e-268 927.9 789 64.1
Oeu007082.1 Olea europaea HOM05D003991 ORTHO05D004883 4.0e-265 918.3 838 60.1
unitig_748.g8415 Utricularia gibba HOM05D003991 ORTHO05D004883 4.6e-261 904.8 787 61.2
Aqoxy3G03722 Aquilegia oxysepala HOM05D003991 ORTHO05D004883 1.1e-257 893.6 779 63.4
Nitab4.5_0001434g0090 Nicotiana tabacum HOM05D003991 ORTHO05D004883 1.5e-256 889.8 787 62.9
CDE06G2000 Ceratophyllum demersum HOM05D003991 ORTHO05D004883 1.1e-251 873.6 797 59.1
SEGI_18103 Sequoiadendron giganteum HOM05D003991 ORTHO05D004883 6.4e-247 857.8 807 59.0
CSS0050035 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 3.0e-236 822.4 715 65.3
HPP92_025879 Vanilla planifolia HOM05D003991 ORTHO05D004883 5.6e-235 818.1 775 56.6
HanXRQChr07g0200011 Helianthus annuus HOM05D003991 ORTHO05D004883 7.4e-235 817.8 809 56.4
ECA238G0416 Erigeron canadensis HOM05D003991 ORTHO05D004883 6.7e-228 794.7 781 57.1
Sc11g0008820 Simmondsia chinensis HOM05D003991 ORTHO05D004883 8.2e-210 734.6 675 61.3
SMO147G0301 Selaginella moellendorffii HOM05D003991 ORTHO05D004883 5.0e-199 698.7 791 49.9
Actinidia26270 Actinidia chinensis HOM05D003991 ORTHO05D004883 1.5e-195 687.2 479 75.6
Pp3c9_9760 Physcomitrium patens HOM05D003991 ORTHO05D004883 2.2e-183 646.7 826 47.2
Pp3c9_9870 Physcomitrium patens HOM05D003991 ORTHO05D004883 2.2e-183 646.7 826 47.2
Mapoly0016s0130 Marchantia polymorpha HOM05D003991 ORTHO05D004883 1.7e-175 620.5 858 44.8
Pp3c15_7610 Physcomitrium patens HOM05D003991 ORTHO05D004883 5.2e-172 609.0 822 45.5
CARHR263670 Cardamine hirsuta HOM05D003991 ORTHO05D004883 8.3e-170 601.7 404 80.7
MBI17_g36999_MAGBIO Magnolia biondii HOM05D003991 ORTHO05D004883 6.4e-162 575.5 531 61.2
AagrBONN_evm.TU.Sc2ySwM_344.1887 Anthoceros agrestis HOM05D003991 ORTHO05D004883 1.4e-161 574.3 825 42.8
Pp3c10_8720 Physcomitrium patens HOM05D003991 ORTHO05D004883 1.1e-158 564.7 642 50.9
Zm00001eb311840 Zea mays HOM05D003991 ORTHO05D004883 1.9e-158 563.9 457 64.8
BcaB04g19523 Brassica carinata HOM05D003991 ORTHO05D004883 2.9e-154 550.1 606 57.8
ECA285G0010 Erigeron canadensis HOM05D003991 ORTHO05D004883 4.9e-154 549.3 607 53.2
Zm00001eb099080 Zea mays HOM05D003991 ORTHO05D004883 4.1e-153 546.2 583 53.0
Os09g0386600 Oryza sativa ssp. japonica HOM05D003991 ORTHO05D004883 5.1e-151 539.3 432 65.7
BcaC04g23815 Brassica carinata HOM05D003991 ORTHO05D004883 5.8e-139 499.2 616 53.7
Aa31LG1G6630 Aethionema arabicum HOM05D003991 ORTHO05D004883 1.4e-108 398.3 707 42.0
BcaC04g23820 Brassica carinata HOM05D003991 ORTHO05D004883 1.5e-91 341.7 475 48.4
Dinv33866 Davidia involucrata HOM05D003991 ORTHO05D004883 1.9e-81 308.1 214 76.6
Sp7g03030 Schrenkiella parvula HOM05D003991 ORTHO05D004883 2.3e-71 274.6 243 63.4
CBR_g36314 Chara braunii HOM05D003991 ORTHO05D004883 3.0e-71 274.2 758 30.3
arahy.Tifrunner.gnm1.ann1.VU455X Arachis hypogaea HOM05D003991 ORTHO05D004883 6.8e-71 273.1 199 71.4
BcaC04g23819 Brassica carinata HOM05D003991 ORTHO05D004883 3.1e-68 264.2 791 32.7
arahy.Tifrunner.gnm1.ann1.994D9I Arachis hypogaea HOM05D003991 ORTHO05D004883 9.1e-68 262.7 189 72.0
arahy.Tifrunner.gnm1.ann1.52AFQE Arachis hypogaea HOM05D003991 ORTHO05D004883 1.6e-67 261.9 189 72.0
arahy.Tifrunner.gnm1.ann1.YE0A4T Arachis hypogaea HOM05D003991 ORTHO05D004883 1.6e-67 261.9 189 72.0
Dinv33867 Davidia involucrata HOM05D003991 ORTHO05D004883 3.1e-60 237.7 201 64.2
SMO147G0173 Selaginella moellendorffii HOM05D003991 ORTHO05D004883 1.1e-49 202.6 551 34.1
Dinv33865 Davidia involucrata HOM05D003991 ORTHO05D004883 2.3e-47 194.9 131 75.6
MD09G1075300 Malus domestica HOM05D003991 ORTHO05D004883 1.1e-39 169.5 109 72.5
HPP92_006579 Vanilla planifolia HOM05D003991 ORTHO05D004883 7.8e-35 153.3 191 49.2
HPP92_006533 Vanilla planifolia HOM05D003991 ORTHO05D004883 1.1e-33 149.4 360 31.7
BcaC04g23821 Brassica carinata HOM05D003991 ORTHO05D004883 1.1e-31 142.9 85 80.0
HPP92_026595 Vanilla planifolia HOM05D003991 ORTHO05D004883 1.4e-31 142.5 130 60.0
Sc11g0008830 Simmondsia chinensis HOM05D003991 ORTHO05D004883 5.2e-31 140.6 80 77.5
SMO147G0397 Selaginella moellendorffii HOM05D003991 ORTHO05D050858 1.3e-29 136.0 142 51.4
BcaB04g19526 Brassica carinata HOM05D003991 ORTHO05D004883 1.7e-29 135.6 74 85.1
CSS0000762 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 4.1e-28 131.0 75 74.7
CSS0038698 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 4.1e-28 131.0 75 74.7
arahy.Tifrunner.gnm1.ann1.Q8CATI Arachis hypogaea HOM05D003991 ORTHO05D004883 3.6e-24 117.9 75 82.7
HPP92_028494 Vanilla planifolia HOM05D003991 ORTHO05D004883 5.4e-20 104.0 127 52.8
HPP92_028205 Vanilla planifolia HOM05D003991 ORTHO05D004883 5.1e-18 97.4 140 39.3
Cfa002005 Carpinus fangiana HOM05D003991 ORTHO05D009743 1.6e-16 92.4 57 86.0
Medtr7g008870 Medicago truncatula HOM05D003991 ORTHO05D004883 2.8e-16 91.7 66 68.2
HPP92_026934 Vanilla planifolia HOM05D003881 ORTHO05D004343 1.8e-15 89.0 84 52.4
HPP92_026824 Vanilla planifolia HOM05D003991 ORTHO05D004883 3.1e-15 88.2 107 46.7
Medtr7g051850 Medicago truncatula HOM05D003991 ORTHO05D004883 4.5e-14 84.3 59 64.4
BcaC04g23826 Brassica carinata HOM05D003991 ORTHO05D004883 5.8e-14 84.0 120 50.8
Cfa020174 Carpinus fangiana HOM05D003991 ORTHO05D004883 5.8e-14 84.0 55 70.9
QL05p023649 Quercus lobata HOM05D003991 ORTHO05D004883 2.4e-12 78.6 52 84.6
Dinv33864 Davidia involucrata HOM05D003991 ORTHO05D004883 4.2e-12 77.8 110 43.6
QL01p030546 Quercus lobata HOM05D003991 ORTHO05D004883 4.6e-11 74.3 52 80.8
QL05p049573 Quercus lobata HOM05D003991 ORTHO05D004883 2.3e-10 72.0 51 78.4
SEGI_36661 Sequoiadendron giganteum HOM05D001164 ORTHO05D018381 8.7e-10 70.1 77 53.2
QL05p049558 Quercus lobata HOM05D003991 ORTHO05D004883 1.1e-09 69.7 65 64.6
HPP92_027770 Vanilla planifolia HOM05D003991 ORTHO05D432268 3.3e-09 68.2 76 55.3
Os11g0189900 Oryza sativa ssp. japonica HOM05D003991 ORTHO05D298446 4.0e-07 61.2 90 43.3
HPP92_027976 Vanilla planifolia HOM05D003991 ORTHO05D004883 4.5e-06 57.8 246 26.8


User provided reference genes

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