Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g17990 Schrenkiella parvula HOM05D006007 ORTHO05D007518 5.1e-302 1040.4 579 100.0
Thhalv10003901m.g Eutrema salsugineum HOM05D006007 ORTHO05D007518 1.8e-251 872.5 578 83.9
BraA02t08659Z Brassica rapa HOM05D006007 ORTHO05D007518 1.7e-225 786.2 566 80.9
A02p36640 Brassica napus HOM05D006007 ORTHO05D007518 2.3e-225 785.8 566 80.7
BcaB07g30079 Brassica carinata HOM05D006007 ORTHO05D007518 4.7e-223 778.1 579 79.3
C02p55600 Brassica napus HOM05D006007 ORTHO05D007518 4.4e-221 771.5 576 80.2
BolC2t11616H Brassica oleracea HOM05D006007 ORTHO05D007518 4.4e-221 771.5 576 80.2
BcaC03g17580 Brassica carinata HOM05D006007 ORTHO05D007518 5.8e-221 771.2 576 80.2
Carub.0005s0814 Capsella rubella HOM05D006007 ORTHO05D007518 6.9e-214 747.7 597 74.5
Aa31LG2G3900 Aethionema arabicum HOM05D006007 ORTHO05D007518 2.1e-210 736.1 583 75.3
AL5G19590 Arabidopsis lyrata HOM05D006007 ORTHO05D007518 2.1e-210 736.1 616 71.9
AT3G29390 Arabidopsis thaliana HOM05D006007 ORTHO05D007518 6.1e-186 654.8 464 79.1
THA.LOC104823889 Tarenaya hassleriana HOM05D006007 ORTHO05D007518 1.7e-180 636.7 574 67.2
Duzib264G0491 Durio zibethinus HOM05D006007 ORTHO05D007518 3.4e-136 489.6 588 55.8
TAR264G0002 Trochodendron aralioides HOM05D006007 ORTHO05D007518 7.5e-136 488.4 609 53.0
Atru.chr8.458 Acer truncatum HOM05D006007 ORTHO05D007518 3.7e-135 486.1 577 52.7
Gorai.007G082800 Gossypium raimondii HOM05D006007 ORTHO05D007518 6.4e-135 485.3 605 57.2
Gohir.A11G072800 Gossypium hirsutum HOM05D006007 ORTHO05D007518 1.4e-134 484.2 604 57.0
Nn4g23426 Nelumbo nucifera HOM05D006007 ORTHO05D007518 4.1e-134 482.6 597 55.3
Thecc.04G095300 Theobroma cacao HOM05D006007 ORTHO05D007518 5.4e-134 482.3 588 54.4
Dinv34943 Davidia involucrata HOM05D006007 ORTHO05D007518 1.6e-133 480.7 475 59.2
GSVIVG01032902001 Vitis vinifera HOM05D006007 ORTHO05D007518 1.0e-132 478.0 584 53.9
Gohir.D11G077100 Gossypium hirsutum HOM05D006007 ORTHO05D007518 1.9e-131 473.8 605 56.4
Potri.017G093600 Populus trichocarpa HOM05D006007 ORTHO05D007518 3.3e-131 473.0 597 53.6
Manes.02G054700 Manihot esculenta HOM05D006007 ORTHO05D007518 5.6e-131 472.2 600 54.3
QL02p067640 Quercus lobata HOM05D006007 ORTHO05D007518 1.6e-130 470.7 599 52.1
Sabra17G0082500 Salix brachista HOM05D006007 ORTHO05D007518 6.2e-130 468.8 603 52.7
RcHm_v2.0_Chr2g0165881 Rosa chinensis HOM05D006007 ORTHO05D007518 2.3e-129 466.8 601 52.1
Cfa007665 Carpinus fangiana HOM05D006007 ORTHO05D007518 3.1e-129 466.5 607 51.6
Ciclev10011374m.g Citrus clementina HOM05D006007 ORTHO05D007518 4.4e-128 462.6 596 51.3
Cc07_g04190 Coffea canephora HOM05D006007 ORTHO05D007518 2.4e-126 456.8 583 52.1
CiPaw.03G088800 Carya illinoinensis HOM05D006007 ORTHO05D007518 5.4e-126 455.7 605 50.9
CSS0026219 Camellia sinensis var. sinensis HOM05D006007 ORTHO05D007518 3.5e-125 453.0 593 52.1
TWI32G0586 Tripterygium wilfordii HOM05D006007 ORTHO05D007518 1.3e-124 451.1 574 53.0
CSS0007202 Camellia sinensis var. sinensis HOM05D006007 ORTHO05D007518 3.0e-124 449.9 593 52.3
FAN09G0451 Fragaria x ananassa HOM05D006007 ORTHO05D007518 3.9e-124 449.5 617 49.9
Cpa.g.sc14.172 Carica papaya HOM05D006007 ORTHO05D007518 5.0e-124 449.1 389 66.6
Haze_14433 Corylus avellana HOM05D006007 ORTHO05D007518 1.1e-123 448.0 488 57.2
CiPaw.04G055900 Carya illinoinensis HOM05D006007 ORTHO05D007518 9.5e-123 444.9 466 58.6
FAN05G3222 Fragaria x ananassa HOM05D006007 ORTHO05D007518 1.6e-122 444.1 632 48.3
MSTRG.23885 Avicennia marina HOM05D006007 ORTHO05D007518 2.1e-122 443.7 591 49.7
PSO017G6380 Papaver somniferum HOM05D006007 ORTHO05D007518 2.8e-122 443.4 588 54.3
COL.COLO4_07027 Corchorus olitorius HOM05D006007 ORTHO05D007518 3.1e-121 439.9 487 56.5
FvH4_6g46910 Fragaria vesca HOM05D006007 ORTHO05D007518 4.0e-121 439.5 616 50.0
PSO478G1877 Papaver somniferum HOM05D006007 ORTHO05D007518 1.3e-119 434.5 583 55.1
FAN02G0083 Fragaria x ananassa HOM05D006007 ORTHO05D007518 5.4e-118 429.1 630 48.7
CANSAT64G1701 Cannabis sativa HOM05D006007 ORTHO05D007518 1.2e-117 427.9 612 50.0
Lalb_Chr17g0337001 Lupinus albus HOM05D006007 ORTHO05D007518 2.1e-117 427.2 615 49.1
FAN05G2596 Fragaria x ananassa HOM05D006007 ORTHO05D007518 1.3e-116 424.5 487 54.6
Glyma.18G266400 Glycine max HOM05D006007 ORTHO05D007518 3.0e-116 423.3 648 46.6
EL10Ac2g03139 Beta vulgaris HOM05D006007 ORTHO05D007518 5.1e-116 422.5 578 51.0
Prupe.3G255200 Prunus persica HOM05D006007 ORTHO05D007518 4.7e-114 416.0 482 55.6
Glyma.08G245100 Glycine max HOM05D006007 ORTHO05D007518 6.2e-114 415.6 526 51.0
AUR62018183 Chenopodium quinoa HOM05D006007 ORTHO05D007518 8.1e-114 415.2 458 56.3
Aqoxy3G03693 Aquilegia oxysepala HOM05D006007 ORTHO05D007518 6.8e-113 412.1 568 51.6
Ah.10g032260 Amaranthus hybridus HOM05D006007 ORTHO05D007518 1.5e-112 411.0 475 54.1
Hund15552 Selenicereus undatus HOM05D006007 ORTHO05D007518 5.8e-112 409.1 481 54.1
FAN14G4567 Fragaria x ananassa HOM05D006007 ORTHO05D007518 7.6e-112 408.7 631 48.2
SalBow1G7079 Salvia bowleyana HOM05D006007 ORTHO05D007518 1.7e-111 407.5 458 53.3
PGSC0003DMG400025145 Solanum tuberosum HOM05D006007 ORTHO05D007518 2.2e-111 407.1 570 51.2
Solyc02g066940.4 Solanum lycopersicum HOM05D006007 ORTHO05D007518 2.9e-111 406.8 569 51.5
PGR004G1158 Punica granatum HOM05D006007 ORTHO05D007518 4.9e-111 406.0 535 48.8
Ca_04352_v3 Cicer arietinum L. HOM05D006007 ORTHO05D007518 4.1e-110 402.9 647 47.6
Migut.H00628 Erythranthe guttata HOM05D006007 ORTHO05D007518 1.2e-109 401.4 471 53.5
Nitab4.5_0000212g0230 Nicotiana tabacum HOM05D006007 ORTHO05D007518 1.2e-109 401.4 580 47.8
CAN.G398.20 Capsicum annuum HOM05D006007 ORTHO05D007518 6.0e-109 399.1 579 48.4
Medtr7g013700 Medicago truncatula HOM05D006007 ORTHO05D007518 6.0e-109 399.1 611 47.8
Ca_30479_v3 Cicer arietinum L. HOM05D006007 ORTHO05D007518 2.3e-108 397.1 519 49.5
Phvul.008G033600 Phaseolus vulgaris HOM05D006007 ORTHO05D007518 3.0e-108 396.7 601 45.3
Sopen02g016130 Solanum pennellii HOM05D006007 ORTHO05D007518 3.3e-107 393.3 468 53.2
DCAR_005549 Daucus carota HOM05D006007 ORTHO05D007518 1.2e-106 391.3 571 49.2
vmacro05632 Vaccinium macrocarpon HOM05D006007 ORTHO05D007518 1.6e-106 391.0 582 49.8
Sed0005820 Sechium edule HOM05D006007 ORTHO05D007518 2.4e-105 387.1 617 46.0
Peaxi162Scf00991g00329 Petunia axillaris HOM05D006007 ORTHO05D007518 3.1e-105 386.7 461 53.6
Lj1g0023913 Lotus japonicus HOM05D006007 ORTHO05D007518 4.0e-105 386.3 624 48.1
HanXRQChr17g0546081 Helianthus annuus HOM05D006007 ORTHO05D007518 3.4e-104 383.3 595 49.6
CDE02G4269 Ceratophyllum demersum HOM05D006007 ORTHO05D007518 3.2e-102 376.7 573 46.8
Lj4A118G52 Lonicera japonica HOM05D006007 ORTHO05D007518 4.2e-102 376.3 584 45.7
Rhsim10G0048800 Rhododendron simsii HOM05D006007 ORTHO05D007518 5.4e-102 375.9 563 45.1
ECA246G0757 Erigeron canadensis HOM05D006007 ORTHO05D007518 2.1e-101 374.0 560 48.8
unitig_52.g17640 Utricularia gibba HOM05D006007 ORTHO05D007518 3.9e-100 369.8 585 47.9
ATR0177G014 Amborella trichopoda HOM05D006007 ORTHO05D007518 1.5e-99 367.9 538 48.5
arahy.Tifrunner.gnm1.ann1.J3LTHX Arachis hypogaea HOM05D006007 ORTHO05D007518 2.5e-99 367.1 531 47.8
ClCG07G016350 Citrullus lanatus HOM05D006007 ORTHO05D007518 2.5e-99 367.1 520 48.3
arahy.Tifrunner.gnm1.ann1.EQE0CJ Arachis hypogaea HOM05D006007 ORTHO05D007518 3.3e-99 366.7 531 47.8
MELO3C022635.2 Cucumis melo HOM05D006007 ORTHO05D007518 8.1e-98 362.1 633 42.3
AUR62038668 Chenopodium quinoa HOM05D006007 ORTHO05D007518 1.4e-97 361.3 361 60.9
Oeu004412.3 Olea europaea HOM05D006007 ORTHO05D007518 4.0e-97 359.8 643 44.0
CsaV3_4G009190 Cucumis sativus L. HOM05D006007 ORTHO05D007518 5.3e-97 359.4 511 47.9
HPP92_007829 Vanilla planifolia HOM05D006007 ORTHO05D007518 6.9e-97 359.0 511 47.2
Zm00001eb008620 Zea mays HOM05D006007 ORTHO05D007518 4.5e-96 356.3 633 41.7
Lsat_1_v5_gn_3_97780 Lactuca sativa HOM05D006007 ORTHO05D007518 9.0e-89 332.0 586 43.2
Nitab4.5_0010627g0030 Nicotiana tabacum HOM05D006007 ORTHO05D007518 5.1e-84 316.2 501 44.3
Psat3g201920 Pisum sativum HOM05D006007 ORTHO05D007518 5.1e-84 316.2 393 51.4
TPR.G33475 Trifolium pratense HOM05D006007 ORTHO05D007518 3.3e-75 287.0 248 64.5
Hma1.2p1_0481F.1_g162150 Hydrangea macrophylla HOM05D006007 ORTHO05D007518 1.3e-74 285.0 380 51.3
SEGI_40404 Sequoiadendron giganteum HOM05D006007 ORTHO05D007518 2.1e-74 284.3 623 36.3
Hma1.2p1_0481F.1_g162140 Hydrangea macrophylla HOM05D006007 ORTHO05D007518 2.8e-74 283.9 375 51.7
MBI19_g00631_MAGBIO Magnolia biondii HOM05D006007 ORTHO05D007518 1.3e-71 275.0 262 58.0
Mapoly0218s0012 Marchantia polymorpha HOM05D006007 ORTHO05D007518 1.7e-71 274.6 630 36.8
Eucgr.J01380 Eucalyptus grandis HOM05D006007 ORTHO05D007518 2.5e-70 270.8 403 52.4
HPP92_007749 Vanilla planifolia HOM05D006007 ORTHO05D007518 7.9e-69 265.8 281 55.2
Pp3c3_22820 Physcomitrium patens HOM05D006007 ORTHO05D007518 2.6e-59 234.2 499 38.7
MD09G1066400 Malus domestica HOM05D006007 ORTHO05D007518 6.9e-57 226.1 346 49.1
MD09G1066300 Malus domestica HOM05D006007 ORTHO05D007518 2.6e-56 224.2 230 57.4
Sc10g0004660 Simmondsia chinensis HOM05D006007 ORTHO05D007518 8.5e-55 219.2 227 57.3
BcaC03g17562 Brassica carinata HOM05D006007 ORTHO05D007518 7.4e-51 206.1 243 55.1
CBR_g19543 Chara braunii HOM05D006007 ORTHO05D007518 3.7e-50 203.8 347 40.3
Sc10g0004670 Simmondsia chinensis HOM05D006007 ORTHO05D007518 5.7e-43 179.9 353 41.4
CDE05G1269 Ceratophyllum demersum HOM05D006007 ORTHO05D007518 1.8e-41 174.9 221 48.9
BraA09t36042Z Brassica rapa HOM05D006007 ORTHO05D007518 3.1e-41 174.1 214 53.7
MBI19_g00630_MAGBIO Magnolia biondii HOM05D006007 ORTHO05D007518 1.3e-39 168.7 225 50.2
A09p04060 Brassica napus HOM05D006007 ORTHO05D010543 6.5e-39 166.4 219 52.1
SHI25685 Sapria himalayana HOM05D006007 ORTHO05D007518 1.4e-36 158.7 142 58.5
Hma1.2p1_0481F.1_g162130 Hydrangea macrophylla HOM05D006007 ORTHO05D007518 4.4e-35 153.7 175 52.0
Oeu051018.1 Olea europaea HOM05D006007 ORTHO05D007518 3.1e-33 147.5 246 46.3
SEGI_00365 Sequoiadendron giganteum HOM05D006007 ORTHO05D007518 4.2e-30 137.1 129 55.8
Os03g0213900 Oryza sativa ssp. japonica HOM05D006007 ORTHO05D007518 1.6e-29 135.2 130 58.5
BolC2t11584H Brassica oleracea HOM05D006007 ORTHO05D007518 1.8e-25 121.7 70 90.0
SHI25684 Sapria himalayana HOM05D006007 ORTHO05D007518 4.5e-24 117.1 166 46.4
CARHR153030 Cardamine hirsuta HOM05D006007 ORTHO05D007518 3.8e-23 114.0 65 89.2
Cre09.g389900 Chlamydomonas reinhardtii HOM05D006007 ORTHO05D007518 2.1e-21 108.2 351 27.6
CDE05G3437 Ceratophyllum demersum HOM05D006007 ORTHO05D007518 5.6e-14 83.6 266 35.0
MBI15_g14467_MAGBIO Magnolia biondii HOM05D003623 ORTHO05D007518 1.2e-11 75.9 138 41.3
CARHR284270 Cardamine hirsuta HOM05D006007 ORTHO05D007518 9.8e-11 72.8 53 67.9
HPP92_007750 Vanilla planifolia HOM05D006007 ORTHO05D007518 2.0e-08 65.1 142 37.3
Cpa.g.sc14.174 Carica papaya HOM05D006007 ORTHO05D007518 9.5e-06 56.2 87 40.2


User provided reference genes

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