Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g17910 Schrenkiella parvula HOM05D005710 ORTHO05D004657 4.4e-300 1033.9 533 100.0
Thhalv10003979m.g Eutrema salsugineum HOM05D005710 ORTHO05D004657 7.7e-212 740.7 487 83.0
Aa31LG2G3970 Aethionema arabicum HOM05D005710 ORTHO05D004657 3.7e-174 615.5 556 63.3
BraA02t08649Z Brassica rapa HOM05D005710 ORTHO05D004657 1.2e-164 583.9 548 65.9
A02p36530 Brassica napus HOM05D005710 ORTHO05D004657 2.7e-164 582.8 551 65.5
AL5G19350 Arabidopsis lyrata HOM05D005710 ORTHO05D004657 5.6e-162 575.1 554 62.3
BcaC03g17571 Brassica carinata HOM05D005710 ORTHO05D004657 5.6e-162 575.1 536 65.3
C02p55500 Brassica napus HOM05D005710 ORTHO05D004657 3.6e-161 572.4 536 65.3
BolC2t11608H Brassica oleracea HOM05D005710 ORTHO05D004657 3.6e-161 572.4 536 65.3
BcaB07g30084 Brassica carinata HOM05D005710 ORTHO05D004657 1.3e-155 553.9 525 66.9
AT3G29310 Arabidopsis thaliana HOM05D005710 ORTHO05D004657 3.0e-155 552.7 598 57.4
CARHR154030 Cardamine hirsuta HOM05D005710 ORTHO05D004657 2.4e-149 533.1 603 57.2
Carub.0005s0802 Capsella rubella HOM05D005710 ORTHO05D004657 4.6e-148 528.9 553 59.5
A06p39970 Brassica napus HOM05D005710 ORTHO05D004657 1.2e-143 514.2 538 61.2
BraA06t26912Z Brassica rapa HOM05D005710 ORTHO05D004657 1.2e-143 514.2 538 61.2
THA.LOC104823892 Tarenaya hassleriana HOM05D005710 ORTHO05D004657 2.1e-137 493.4 550 55.3
Thhalv10027716m.g Eutrema salsugineum HOM05D005710 ORTHO05D004657 5.3e-128 462.2 555 55.1
THA.LOC104805502 Tarenaya hassleriana HOM05D005710 ORTHO05D004657 4.5e-127 459.1 541 53.0
Aa31LG9G16660 Aethionema arabicum HOM05D005710 ORTHO05D004657 1.0e-118 431.4 547 51.0
BcaC08g44413 Brassica carinata HOM05D005710 ORTHO05D004657 7.0e-88 328.9 544 46.3
C06p18500 Brassica napus HOM05D005710 ORTHO05D004657 7.0e-88 328.9 544 46.3
C07p38200 Brassica napus HOM05D005710 ORTHO05D004657 1.0e-86 325.1 298 64.4
BcaB02g07987 Brassica carinata HOM05D005710 ORTHO05D004657 8.6e-86 322.0 542 45.4
BolC6t37063H Brassica oleracea HOM05D005710 ORTHO05D004657 1.9e-77 294.3 542 43.0
BcaC06g33686 Brassica carinata HOM05D005710 ORTHO05D004657 6.8e-75 285.8 402 50.5
Cpa.g.sc14.156 Carica papaya HOM05D005710 ORTHO05D004657 2.1e-55 221.1 555 36.9
Sp7g02650 Schrenkiella parvula HOM05D005710 ORTHO05D004657 4.4e-50 203.4 318 45.3
Sabra17G0080200 Salix brachista HOM05D005710 ORTHO05D004657 1.0e-46 192.2 555 33.0
CiPaw.04G057600 Carya illinoinensis HOM05D005710 ORTHO05D004657 9.6e-45 185.7 542 34.3
Cfa007637 Carpinus fangiana HOM05D005710 ORTHO05D004657 4.0e-43 180.3 369 39.6
Ciclev10011685m.g Citrus clementina HOM05D005710 ORTHO05D004657 1.5e-42 178.3 501 34.1
Atru.chr8.406 Acer truncatum HOM05D005710 ORTHO05D004657 4.2e-40 170.2 357 36.4
Prupe.3G257800 Prunus persica HOM05D005710 ORTHO05D004657 4.2e-40 170.2 301 39.5
FAN14G2617 Fragaria x ananassa HOM05D005710 ORTHO05D004657 1.2e-39 168.7 395 34.9
Manes.01G098200 Manihot esculenta HOM05D005710 ORTHO05D004657 2.1e-39 167.9 513 31.6
FAN09G1437 Fragaria x ananassa HOM05D005710 ORTHO05D004657 3.5e-39 167.2 558 32.1
TWI32G0095 Tripterygium wilfordii HOM05D005710 ORTHO05D004657 4.6e-39 166.8 369 35.8
Potri.017G091100 Populus trichocarpa HOM05D005710 ORTHO05D004657 1.3e-38 165.2 455 35.4
MD09G1062500 Malus domestica HOM05D005710 ORTHO05D004657 3.9e-38 163.7 440 34.5
QL02p039943 Quercus lobata HOM05D005710 ORTHO05D004657 3.9e-38 163.7 408 37.0
FAN05G5426 Fragaria x ananassa HOM05D005710 ORTHO05D004657 6.6e-38 162.9 485 34.0
TWI60G1009 Tripterygium wilfordii HOM05D005710 ORTHO05D004657 6.6e-38 162.9 381 36.5
FvH4_6g47270 Fragaria vesca HOM05D005710 ORTHO05D004657 1.1e-37 162.2 396 34.8
Gorai.006G011600 Gossypium raimondii HOM05D005710 ORTHO05D004657 1.5e-37 161.8 338 36.1
Thecc.04G091900 Theobroma cacao HOM05D005710 ORTHO05D004657 7.3e-37 159.5 518 34.0
Gohir.D09G010000 Gossypium hirsutum HOM05D005710 ORTHO05D004657 1.3e-36 158.7 354 35.6
BcaC06g30873 Brassica carinata HOM05D005710 ORTHO05D004657 4.8e-36 156.8 151 62.9
RcHm_v2.0_Chr2g0166341 Rosa chinensis HOM05D005710 ORTHO05D004657 6.2e-36 156.4 335 37.3
Gohir.A09G010900 Gossypium hirsutum HOM05D005710 ORTHO05D004657 1.1e-35 155.6 383 33.2
MD00G1156300 Malus domestica HOM05D005710 ORTHO05D004657 5.3e-35 153.3 247 42.9
Lsat_1_v5_gn_3_98801 Lactuca sativa HOM05D005710 ORTHO05D004657 6.9e-35 152.9 316 38.3
CANSAT64G1937 Cannabis sativa HOM05D005710 ORTHO05D004657 9.0e-35 152.5 536 31.2
TWI34G1348 Tripterygium wilfordii HOM05D005710 ORTHO05D004657 1.2e-34 152.1 361 35.2
Duzib147G0411 Durio zibethinus HOM05D005710 ORTHO05D004657 9.9e-34 149.1 501 32.3
Hma1.2p1_0481F.1_g161930 Hydrangea macrophylla HOM05D005710 ORTHO05D004657 2.2e-33 147.9 359 36.8
Lj1g0027832 Lotus japonicus HOM05D005710 ORTHO05D004657 3.8e-33 147.1 488 30.1
DCAR_011051 Daucus carota HOM05D005710 ORTHO05D004657 1.9e-32 144.8 491 30.5
Rhsim08G0074100 Rhododendron simsii HOM05D005710 ORTHO05D004657 4.2e-32 143.7 339 34.2
COL.COLO4_03731 Corchorus olitorius HOM05D005710 ORTHO05D004657 5.5e-32 143.3 506 29.2
VMungo1383G0251 Vigna mungo HOM05D005710 ORTHO05D004657 2.1e-31 141.4 360 35.8
Medtr7g012940 Medicago truncatula HOM05D005710 ORTHO05D004657 3.5e-31 140.6 395 31.9
Manes.02G052100 Manihot esculenta HOM05D005710 ORTHO05D004657 4.6e-31 140.2 543 28.4
PGR004G2722 Punica granatum HOM05D005710 ORTHO05D004657 7.9e-31 139.4 303 37.0
vmacro18155 Vaccinium macrocarpon HOM05D005710 ORTHO05D004657 1.8e-30 138.3 304 35.5
Sc11g0004700 Simmondsia chinensis HOM05D005710 ORTHO05D004657 3.0e-30 137.5 420 33.1
Glyma.08G242700 Glycine max HOM05D005710 ORTHO05D004657 3.9e-30 137.1 307 34.9
Actinidia07818 Actinidia chinensis HOM05D005710 ORTHO05D004657 1.1e-29 135.6 277 39.7
Duzib187G0917 Durio zibethinus HOM05D005710 ORTHO05D004657 1.1e-29 135.6 462 32.0
TPR.G33463 Trifolium pratense HOM05D005710 ORTHO05D004657 1.5e-29 135.2 357 31.7
Phvul.008G035100 Phaseolus vulgaris HOM05D005710 ORTHO05D004657 4.3e-29 133.7 325 34.2
MELO3C022025.2 Cucumis melo HOM05D005710 ORTHO05D004657 5.6e-29 133.3 381 33.3
CsaV3_5G038440 Cucumis sativus L. HOM05D005710 ORTHO05D004657 1.6e-28 131.7 402 32.8
HanXRQChr15g0473071 Helianthus annuus HOM05D005710 ORTHO05D004657 1.6e-28 131.7 256 38.3
Eucgr.I01977 Eucalyptus grandis HOM05D005710 ORTHO05D004657 2.8e-28 131.0 287 38.0
PSO017G2516 Papaver somniferum HOM05D005710 ORTHO05D004657 3.7e-28 130.6 284 34.5
Psat3g200880 Pisum sativum HOM05D005710 ORTHO05D004657 3.7e-28 130.6 328 36.9
Actinidia01981 Actinidia chinensis HOM05D005710 ORTHO05D004657 6.2e-28 129.8 298 37.6
PSO478G1813 Papaver somniferum HOM05D005710 ORTHO05D004657 6.2e-28 129.8 275 35.6
SalBow7G3425 Salvia bowleyana HOM05D005710 ORTHO05D004657 6.2e-28 129.8 254 38.6
Hund13162 Selenicereus undatus HOM05D005710 ORTHO05D004657 1.1e-27 129.0 368 30.4
Solyc02g088660.4 Solanum lycopersicum HOM05D005710 ORTHO05D004657 1.8e-27 128.3 195 41.5
Lalb_Chr17g0337061 Lupinus albus HOM05D005710 ORTHO05D004657 2.4e-27 127.9 435 32.2
EL10Ac2g03101 Beta vulgaris HOM05D005710 ORTHO05D004657 5.3e-27 126.7 412 29.9
Migut.K01286 Erythranthe guttata HOM05D005710 ORTHO05D004657 6.9e-27 126.3 298 35.6
Nitab4.5_0008213g0040 Nicotiana tabacum HOM05D005710 ORTHO05D004657 6.9e-27 126.3 192 42.2
Nitab4.5_0000565g0150 Nicotiana tabacum HOM05D005710 ORTHO05D004657 1.5e-26 125.2 236 38.6
Aqoxy3G03578 Aquilegia oxysepala HOM05D005710 ORTHO05D004657 2.6e-26 124.4 183 45.4
Cc07_g04040 Coffea canephora HOM05D005710 ORTHO05D004657 2.6e-26 124.4 301 35.5
Ah.10g032010 Amaranthus hybridus HOM05D005710 ORTHO05D004657 7.6e-26 122.9 334 32.6
ECA246G0940 Erigeron canadensis HOM05D005710 ORTHO05D004657 7.6e-26 122.9 192 43.8
Oeu025712.1 Olea europaea HOM05D005710 ORTHO05D004657 7.6e-26 122.9 408 32.4
Glyma.18G264900 Glycine max HOM05D005710 ORTHO05D004657 1.7e-25 121.7 319 33.5
Dinv34961 Davidia involucrata HOM05D005710 ORTHO05D004657 2.2e-25 121.3 231 39.8
ClCG11G004670 Citrullus lanatus HOM05D005710 ORTHO05D004657 1.4e-24 118.6 224 39.3
arahy.Tifrunner.gnm1.ann1.EE1ZRN Arachis hypogaea HOM05D005710 ORTHO05D004657 3.2e-24 117.5 444 31.3
Haze_14462 Corylus avellana HOM05D005710 ORTHO05D004657 7.1e-24 116.3 378 31.7
arahy.Tifrunner.gnm1.ann1.B1JWTK Arachis hypogaea HOM05D005710 ORTHO05D004657 9.3e-24 115.9 457 30.2
CSS0045690 Camellia sinensis var. sinensis HOM05D005710 ORTHO05D004657 1.2e-23 115.5 436 29.4
SGA_v2.0_scaffold52G19180 Striga asiatica HOM05D005710 ORTHO05D004657 1.6e-23 115.2 300 32.7
Hund15554 Selenicereus undatus HOM05D005710 ORTHO05D004657 2.7e-23 114.4 301 32.2
AUR62042434 Chenopodium quinoa HOM05D005710 ORTHO05D004657 3.5e-23 114.0 262 31.7
TAR629G0087 Trochodendron aralioides HOM05D005710 ORTHO05D004657 6.0e-23 113.2 276 35.1
SGA_v2.0_scaffold4G02406 Striga asiatica HOM05D005710 ORTHO05D004657 1.8e-22 111.7 273 33.3
AUR62018163 Chenopodium quinoa HOM05D005710 ORTHO05D004657 3.9e-22 110.5 350 27.7
Sed0007565 Sechium edule HOM05D005710 ORTHO05D004657 3.9e-22 110.5 456 30.7
A07p19920 Brassica napus HOM05D005710 ORTHO05D004657 5.7e-21 106.7 183 44.3
CAN.G206.210 Capsicum annuum HOM05D005710 ORTHO05D004657 4.8e-20 103.6 363 31.7
Haze_14452 Corylus avellana HOM05D005710 ORTHO05D004657 3.8e-17 94.0 274 31.8
CDE07G0246 Ceratophyllum demersum HOM05D001913 ORTHO05D001880 8.4e-17 92.8 224 34.8
Hma1.2p1_1813F.1_g303710 Hydrangea macrophylla HOM05D005710 ORTHO05D004657 8.4e-17 92.8 322 31.7
Os05g0512400 Oryza sativa ssp. japonica HOM05D005710 ORTHO05D004657 4.2e-16 90.5 115 47.0
MBI16_g30408_MAGBIO Magnolia biondii HOM05D001913 ORTHO05D001880 5.5e-16 90.1 307 29.3
Peaxi162Scf00166g00643 Petunia axillaris HOM05D005710 ORTHO05D004657 2.1e-15 88.2 176 35.8
Zm00001eb352990 Zea mays HOM05D005710 ORTHO05D004657 3.0e-14 84.3 178 37.1
SalBow2G0426 Salvia bowleyana HOM05D005710 ORTHO05D004657 6.7e-14 83.2 82 56.1
HPP92_019480 Vanilla planifolia HOM05D005710 ORTHO05D004657 6.7e-14 83.2 186 34.4
BolC7t44342H Brassica oleracea HOM05D005710 ORTHO05D004657 1.5e-13 82.0 131 43.5
SEGI_24397 Sequoiadendron giganteum HOM05D005186 ORTHO05D006278 4.1e-11 73.9 140 37.1
AL3G48400 Arabidopsis lyrata HOM05D005710 ORTHO05D004657 3.4e-10 70.9 54 66.7
Sp7g02640 Schrenkiella parvula HOM05D005710 ORTHO05D004657 3.6e-07 60.8 84 46.4
Carub.0004s2894 Capsella rubella HOM05D006269 ORTHO05D001487 1.0e-06 59.3 126 31.7
SEGI_35486 Sequoiadendron giganteum HOM05D006269 ORTHO05D001487 2.3e-06 58.2 157 29.9
Pp3c19_17670 Physcomitrium patens HOM05D006269 ORTHO05D001487 3.0e-06 57.8 191 29.3
Migut.K01288 Erythranthe guttata HOM05D005710 ORTHO05D004657 3.9e-06 57.4 211 29.9
Medtr4g036110 Medicago truncatula HOM05D005186 ORTHO05D006278 6.7e-06 56.6 121 33.9
BcaC02g12510 Brassica carinata HOM05D006269 ORTHO05D001487 8.8e-06 56.2 183 26.2


User provided reference genes

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