Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g17880 Schrenkiella parvula HOM05D006982 ORTHO05D008909 1.5e-95 352.8 175 100.0
Thhalv10005014m.g Eutrema salsugineum HOM05D006982 ORTHO05D008909 4.8e-94 347.8 175 97.1
AL5G19280 Arabidopsis lyrata HOM05D006982 ORTHO05D008909 5.5e-90 334.3 178 93.3
BcaB07g30087 Brassica carinata HOM05D006982 ORTHO05D008909 2.7e-89 332.0 175 94.3
Carub.0005s0799 Capsella rubella HOM05D006982 ORTHO05D008909 3.5e-89 331.6 174 94.3
AT3G29280 Arabidopsis thaliana HOM05D006982 ORTHO05D008909 4.6e-89 331.3 174 94.8
A02p36510 Brassica napus HOM05D006982 ORTHO05D008909 3.9e-88 328.2 170 94.1
BraA02t08647Z Brassica rapa HOM05D006982 ORTHO05D008909 1.9e-87 325.9 167 94.6
BcaC03g17569 Brassica carinata HOM05D006982 ORTHO05D008909 9.7e-87 323.6 175 91.4
C02p55480 Brassica napus HOM05D006982 ORTHO05D008909 2.2e-86 322.4 172 92.4
BolC2t11604H Brassica oleracea HOM05D006982 ORTHO05D008909 1.1e-85 320.1 171 92.4
CARHR292480 Cardamine hirsuta HOM05D006982 ORTHO05D008909 1.2e-84 316.6 171 91.2
A06p40000 Brassica napus HOM05D006982 ORTHO05D008909 1.3e-83 313.2 167 91.0
Aa31LG2G3980 Aethionema arabicum HOM05D006982 ORTHO05D008909 2.2e-83 312.4 170 91.2
BolC7t44339H Brassica oleracea HOM05D006982 ORTHO05D008909 1.9e-82 309.3 175 88.0
THA.LOC104805498 Tarenaya hassleriana HOM05D006982 ORTHO05D008909 4.2e-74 281.6 165 79.4
Atru.chr8.390 Acer truncatum HOM05D006982 ORTHO05D008909 2.7e-73 278.9 154 83.8
BraA06t26915Z Brassica rapa HOM05D006982 ORTHO05D008909 1.0e-72 276.9 144 92.4
Duzib187G0332 Durio zibethinus HOM05D006982 ORTHO05D008909 6.7e-72 274.2 172 76.2
Thecc.04G091200 Theobroma cacao HOM05D006982 ORTHO05D008909 8.8e-72 273.9 169 77.5
GSVIVG01011493001 Vitis vinifera HOM05D006982 ORTHO05D008909 5.7e-71 271.2 171 74.3
Manes.01G098700 Manihot esculenta HOM05D006982 ORTHO05D008909 9.7e-71 270.4 168 74.4
Potri.017G090400 Populus trichocarpa HOM05D006982 ORTHO05D008909 1.3e-70 270.0 163 80.4
PGR004G0184 Punica granatum HOM05D006982 ORTHO05D008909 3.7e-70 268.5 171 73.7
CANSAT64G0008 Cannabis sativa HOM05D006982 ORTHO05D008909 1.4e-69 266.5 161 76.4
Dinv11484 Davidia involucrata HOM05D006982 ORTHO05D008909 1.4e-69 266.5 173 72.3
Lj2g0023544 Lotus japonicus HOM05D006982 ORTHO05D008909 5.3e-69 264.6 171 74.9
Hma1.2p1_1813F.1_g303760 Hydrangea macrophylla HOM05D006982 ORTHO05D008909 7.0e-69 264.2 173 72.3
CiPaw.03G091200 Carya illinoinensis HOM05D006982 ORTHO05D008909 1.2e-68 263.5 168 73.8
QL02p039506 Quercus lobata HOM05D006982 ORTHO05D008909 1.5e-68 263.1 170 73.5
TWI60G0050 Tripterygium wilfordii HOM05D006982 ORTHO05D008909 1.5e-68 263.1 170 74.7
Hma1.2p1_3044F.1_g332060 Hydrangea macrophylla HOM05D006982 ORTHO05D008909 2.0e-68 262.7 173 71.7
Gohir.D09G010400 Gossypium hirsutum HOM05D006982 ORTHO05D008909 4.5e-68 261.5 167 74.9
VMungo0464G0061 Vigna mungo HOM05D006982 ORTHO05D008909 4.5e-68 261.5 174 71.3
Ciclev10012958m.g Citrus clementina HOM05D006982 ORTHO05D008909 5.9e-68 261.2 162 75.3
Nn4g23351 Nelumbo nucifera HOM05D006982 ORTHO05D008909 7.7e-68 260.8 161 76.4
Gorai.006G012000 Gossypium raimondii HOM05D006982 ORTHO05D008909 1.3e-67 260.0 160 76.2
Phvul.004G033900 Phaseolus vulgaris HOM05D006982 ORTHO05D008909 1.3e-67 260.0 174 71.8
Rhsim10G0045300 Rhododendron simsii HOM05D006982 ORTHO05D008909 2.9e-67 258.8 165 75.2
Glyma.13G058700 Glycine max HOM05D006982 ORTHO05D008909 3.8e-67 258.5 170 72.4
Haze_14468 Corylus avellana HOM05D006982 ORTHO05D008909 6.5e-67 257.7 170 72.4
Eucgr.I01983 Eucalyptus grandis HOM05D006982 ORTHO05D008909 6.5e-67 257.7 168 71.4
FvH4_6g47420 Fragaria vesca HOM05D006982 ORTHO05D008909 2.5e-66 255.8 171 73.1
FAN14G3321 Fragaria x ananassa HOM05D006982 ORTHO05D008909 2.5e-66 255.8 171 73.1
vmacro05662 Vaccinium macrocarpon HOM05D006982 ORTHO05D008909 3.2e-66 255.4 164 71.3
CsaV3_3G026330 Cucumis sativus L. HOM05D006982 ORTHO05D008909 4.2e-66 255.0 152 75.0
RcHm_v2.0_Chr2g0166501 Rosa chinensis HOM05D006982 ORTHO05D008909 4.2e-66 255.0 169 74.0
Sc11g0004740 Simmondsia chinensis HOM05D006982 ORTHO05D008909 4.2e-66 255.0 153 77.8
MELO3C014935.2 Cucumis melo HOM05D006982 ORTHO05D008909 9.4e-66 253.8 151 75.5
ClCG05G014130 Citrullus lanatus HOM05D006982 ORTHO05D008909 2.1e-65 252.7 152 74.3
FAN09G4389 Fragaria x ananassa HOM05D006982 ORTHO05D008909 2.7e-65 252.3 171 71.3
Glyma.19G027800 Glycine max HOM05D006982 ORTHO05D008909 2.7e-65 252.3 165 73.3
Psat1g070160 Pisum sativum HOM05D006982 ORTHO05D008909 3.6e-65 251.9 166 70.5
Sed0004734 Sechium edule HOM05D006982 ORTHO05D008909 3.6e-65 251.9 152 75.0
SalBow1G5236 Salvia bowleyana HOM05D006982 ORTHO05D008909 6.1e-65 251.1 168 68.5
TPR.G26172 Trifolium pratense HOM05D006982 ORTHO05D008909 6.1e-65 251.1 167 70.1
Cpa.g.sc14.148 Carica papaya HOM05D006982 ORTHO05D008909 1.4e-64 250.0 153 77.1
Lalb_Chr02g0159031 Lupinus albus HOM05D006982 ORTHO05D008909 1.8e-64 249.6 166 71.1
TAR629G3328 Trochodendron aralioides HOM05D006982 ORTHO05D008909 1.8e-64 249.6 169 69.8
RcHm_v2.0_Chr2g0166491 Rosa chinensis HOM05D006982 ORTHO05D008909 2.3e-64 249.2 171 72.5
Aqoxy3G00454 Aquilegia oxysepala HOM05D006982 ORTHO05D008909 3.0e-64 248.8 156 76.3
Actinidia07827 Actinidia chinensis HOM05D006982 ORTHO05D008909 6.7e-64 247.7 147 75.5
FAN02G3418 Fragaria x ananassa HOM05D006982 ORTHO05D008909 6.7e-64 247.7 171 70.8
Cc07_g04010 Coffea canephora HOM05D006982 ORTHO05D008909 1.1e-63 246.9 165 70.3
MSTRG.3019 Avicennia marina HOM05D006982 ORTHO05D008909 2.0e-63 246.1 167 69.5
HanXRQChr07g0199461 Helianthus annuus HOM05D006982 ORTHO05D008909 2.0e-63 246.1 166 69.9
SGA_v2.0_scaffold4G02409 Striga asiatica HOM05D006982 ORTHO05D008909 2.0e-63 246.1 166 68.1
Migut.H00650 Erythranthe guttata HOM05D006982 ORTHO05D008909 2.6e-63 245.7 170 69.4
MD09G1061600 Malus domestica HOM05D006982 ORTHO05D008909 2.6e-63 245.7 174 70.1
Nitab4.5_0005196g0040 Nicotiana tabacum HOM05D006982 ORTHO05D008909 4.4e-63 245.0 156 71.8
Nitab4.5_0001637g0060 Nicotiana tabacum HOM05D006982 ORTHO05D008909 1.3e-62 243.4 156 71.2
Sabra17G0079600 Salix brachista HOM05D006982 ORTHO05D008909 2.2e-62 242.7 208 61.5
PSO017G1487 Papaver somniferum HOM05D006982 ORTHO05D008909 2.8e-62 242.3 161 72.7
Lsat_1_v5_gn_2_87800 Lactuca sativa HOM05D006982 ORTHO05D008909 8.2e-62 240.7 168 66.7
Os03g0257000 Oryza sativa ssp. japonica HOM05D006982 ORTHO05D008909 1.1e-61 240.4 163 63.2
Sopen03g016600 Solanum pennellii HOM05D006982 ORTHO05D008909 1.8e-61 239.6 156 69.2
ATR0064G116 Amborella trichopoda HOM05D006982 ORTHO05D008909 2.4e-61 239.2 155 72.3
CAN.G734.5 Capsicum annuum HOM05D006982 ORTHO05D008909 3.1e-61 238.8 155 71.0
Prupe.3G258600 Prunus persica HOM05D006982 ORTHO05D008909 3.1e-61 238.8 180 67.2
EL10Ac2g03084 Beta vulgaris HOM05D006982 ORTHO05D008909 5.3e-61 238.0 166 68.1
ECA238G0675 Erigeron canadensis HOM05D006982 ORTHO05D008909 5.3e-61 238.0 167 65.3
AUR62042567 Chenopodium quinoa HOM05D006982 ORTHO05D008909 1.2e-60 236.9 167 66.5
Os03g0209700 Oryza sativa ssp. japonica HOM05D006982 ORTHO05D008909 1.6e-60 236.5 163 65.0
PSO478G0313 Papaver somniferum HOM05D006982 ORTHO05D008909 2.0e-60 236.1 153 73.9
Zm00001eb011170 Zea mays HOM05D006982 ORTHO05D008909 2.6e-60 235.7 152 69.1
Solyc03g013250.4 Solanum lycopersicum HOM05D006982 ORTHO05D008909 1.0e-59 233.8 152 69.1
BolC2t11598H Brassica oleracea HOM05D006982 ORTHO05D008909 8.5e-59 230.7 132 87.1
Gohir.A09G011401 Gossypium hirsutum HOM05D006982 ORTHO05D008909 6.3e-54 214.5 183 62.3
Hund13166 Selenicereus undatus HOM05D006982 ORTHO05D008909 1.4e-53 213.4 161 67.1
Lj4A116T80 Lonicera japonica HOM05D006982 ORTHO05D008909 1.1e-50 203.8 122 73.8
SEGI_41437 Sequoiadendron giganteum HOM05D006982 ORTHO05D008909 1.9e-50 203.0 148 62.8
CDE04G2259 Ceratophyllum demersum HOM05D006982 ORTHO05D008909 2.7e-49 199.1 130 68.5
COL.COLO4_21380 Corchorus olitorius HOM05D006982 ORTHO05D008909 6.8e-48 194.5 121 73.6
C07p38170 Brassica napus HOM05D006982 ORTHO05D008909 3.4e-47 192.2 102 92.2
Ah.10g031970 Amaranthus hybridus HOM05D006982 ORTHO05D008909 9.8e-47 190.7 165 56.4
Medtr6g013815 Medicago truncatula HOM05D006982 ORTHO05D008909 1.7e-46 189.9 125 68.0
SMO164G0193 Selaginella moellendorffii HOM05D006982 ORTHO05D008909 2.8e-46 189.1 146 58.9
Peaxi162Scf00451g00425 Petunia axillaris HOM05D006982 ORTHO05D008909 1.1e-45 187.2 157 61.1
unitig_899.g15159 Utricularia gibba HOM05D006982 ORTHO05D008909 4.5e-44 181.8 151 60.9
Pp3c21_18720 Physcomitrium patens HOM05D006982 ORTHO05D008909 2.5e-42 176.0 153 54.9
arahy.Tifrunner.gnm1.ann1.NGZQ86 Arachis hypogaea HOM05D006982 ORTHO05D008909 5.4e-37 158.3 156 53.8
arahy.Tifrunner.gnm1.ann1.84WVAW Arachis hypogaea HOM05D006982 ORTHO05D008909 1.2e-36 157.1 156 53.2
C02p55410 Brassica napus HOM05D006982 ORTHO05D008909 6.6e-35 151.4 119 68.1
SHI03750 Sapria himalayana HOM05D000002 ORTHO05D000001 3.3e-34 149.1 92 70.7
FAN05G3993 Fragaria x ananassa HOM05D006982 ORTHO05D008909 1.0e-32 144.1 104 74.0
CSS0035536 Camellia sinensis var. sinensis HOM05D006982 ORTHO05D008909 5.4e-29 131.7 77 74.0
TPR.G3955 Trifolium pratense HOM05D006982 ORTHO05D008909 2.1e-20 103.2 75 69.3
AUR62018155 Chenopodium quinoa HOM05D006982 ORTHO05D008909 9.2e-13 77.8 50 72.0
CSS0038093 Camellia sinensis var. sinensis HOM05D006982 ORTHO05D008909 8.6e-11 71.2 43 74.4
Lj4A116T81 Lonicera japonica HOM05D006982 ORTHO05D008909 1.6e-09 67.0 40 72.5
AUR62006323 Chenopodium quinoa HOM05D003441 ORTHO05D044017 6.2e-09 65.1 78 44.9
PGSC0003DMG400033554 Solanum tuberosum HOM05D006982 ORTHO05D008909 1.4e-08 63.9 43 69.8
SHI03749 Sapria himalayana HOM05D006982 ORTHO05D000001 4.0e-08 62.4 49 55.1
Medtr6g013805 Medicago truncatula HOM05D006982 ORTHO05D008909 2.0e-07 60.1 40 67.5
TPR.G26213 Trifolium pratense HOM05D006982 ORTHO05D008909 2.2e-06 56.6 47 55.3


User provided reference genes

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