Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g17760 Schrenkiella parvula HOM05D007012 ORTHO05D008882 4.0e-60 234.6 120 100.0
Thhalv10005148m.g Eutrema salsugineum HOM05D007012 ORTHO05D008882 2.9e-58 228.4 120 96.7
AL5G19030 Arabidopsis lyrata HOM05D007012 ORTHO05D008882 1.4e-57 226.1 120 95.0
BcaC06g30880 Brassica carinata HOM05D007012 ORTHO05D008882 9.3e-57 223.4 120 94.2
BcaC06g33671 Brassica carinata HOM05D007012 ORTHO05D008882 2.7e-56 221.9 120 93.3
C07p38010 Brassica napus HOM05D007012 ORTHO05D008882 2.7e-56 221.9 120 93.3
BolC7t44322H Brassica oleracea HOM05D007012 ORTHO05D008882 2.7e-56 221.9 120 93.3
A06p40130 Brassica napus HOM05D007012 ORTHO05D008882 3.9e-55 218.0 120 91.7
Carub.0005s0786 Capsella rubella HOM05D007012 ORTHO05D008882 6.7e-55 217.2 120 90.0
CARHR152280 Cardamine hirsuta HOM05D007012 ORTHO05D008882 1.9e-54 215.7 120 90.8
Aa31LG2G4090 Aethionema arabicum HOM05D007012 ORTHO05D008882 3.7e-53 211.5 120 87.5
THA.LOC104805486 Tarenaya hassleriana HOM05D007012 ORTHO05D008882 3.8e-50 201.4 117 85.5
BraA06t26928Z Brassica rapa HOM05D007012 ORTHO05D008882 8.8e-47 190.3 175 62.3
Sed0027179 Sechium edule HOM05D007012 ORTHO05D008882 2.0e-46 189.1 118 78.0
Dinv35474 Davidia involucrata HOM05D007012 ORTHO05D008882 7.4e-46 187.2 119 74.8
Cc09_g08050 Coffea canephora HOM05D007012 ORTHO05D008882 9.7e-46 186.8 119 75.6
vmacro03442 Vaccinium macrocarpon HOM05D007012 ORTHO05D008882 1.3e-45 186.4 119 74.8
Rhsim05G0222100 Rhododendron simsii HOM05D007012 ORTHO05D008882 2.8e-45 185.3 119 75.6
MELO3C023274.2 Cucumis melo HOM05D007012 ORTHO05D008882 1.8e-44 182.6 118 75.4
Gohir.A06G207700 Gossypium hirsutum HOM05D007012 ORTHO05D008882 2.4e-44 182.2 118 72.9
ClCG02G000770 Citrullus lanatus HOM05D007012 ORTHO05D008882 4.1e-44 181.4 118 74.6
Atru.chr10.869 Acer truncatum HOM05D007012 ORTHO05D008882 5.3e-44 181.0 119 73.1
QL05p061226 Quercus lobata HOM05D007012 ORTHO05D008882 5.3e-44 181.0 118 73.7
Actinidia03306 Actinidia chinensis HOM05D007012 ORTHO05D008882 6.9e-44 180.6 119 73.1
Hma1.2p1_0333F.1_g128270 Hydrangea macrophylla HOM05D007012 ORTHO05D008882 6.9e-44 180.6 119 73.9
CSS0014344 Camellia sinensis var. sinensis HOM05D007012 ORTHO05D008882 1.2e-43 179.9 119 72.3
Ciclev10017190m.g Citrus clementina HOM05D007012 ORTHO05D008882 1.2e-43 179.9 119 73.9
Thecc.06G001300 Theobroma cacao HOM05D007012 ORTHO05D008882 1.5e-43 179.5 119 71.4
Gohir.D06G213600 Gossypium hirsutum HOM05D007012 ORTHO05D008882 2.0e-43 179.1 118 72.0
Gorai.010G252500 Gossypium raimondii HOM05D007012 ORTHO05D008882 2.0e-43 179.1 118 72.0
MD10G1253600 Malus domestica HOM05D007012 ORTHO05D008882 3.4e-43 178.3 117 75.2
FAN25G0029 Fragaria x ananassa HOM05D007012 ORTHO05D008882 5.9e-43 177.6 117 73.5
Manes.14G122800 Manihot esculenta HOM05D007012 ORTHO05D008882 7.7e-43 177.2 118 71.2
Solyc02g069820.3 Solanum lycopersicum HOM05D007012 ORTHO05D008882 7.7e-43 177.2 119 68.9
PGSC0003DMG400021126 Solanum tuberosum HOM05D007012 ORTHO05D008882 1.0e-42 176.8 118 69.5
Sopen02g018980 Solanum pennellii HOM05D007012 ORTHO05D008882 1.3e-42 176.4 124 68.5
CAN.G1520.3 Capsicum annuum HOM05D007012 ORTHO05D008882 1.7e-42 176.0 119 70.6
FvH4_3g10060 Fragaria vesca HOM05D007012 ORTHO05D008882 2.2e-42 175.6 117 72.6
FAN21G1693 Fragaria x ananassa HOM05D007012 ORTHO05D008882 2.9e-42 175.3 117 72.6
RcHm_v2.0_Chr5g0015911 Rosa chinensis HOM05D007012 ORTHO05D008882 2.9e-42 175.3 117 71.8
Prupe.4G090000 Prunus persica HOM05D007012 ORTHO05D008882 3.8e-42 174.9 119 71.4
CiPaw.09G115600 Carya illinoinensis HOM05D007012 ORTHO05D008882 5.0e-42 174.5 119 73.1
TAR629G2694 Trochodendron aralioides HOM05D007012 ORTHO05D008882 5.0e-42 174.5 119 70.6
CiPaw.10G085800 Carya illinoinensis HOM05D007012 ORTHO05D008882 6.5e-42 174.1 119 73.1
Nitab4.5_0001225g0050 Nicotiana tabacum HOM05D007012 ORTHO05D008882 6.5e-42 174.1 119 68.1
Nitab4.5_0004615g0020 Nicotiana tabacum HOM05D007012 ORTHO05D008882 6.5e-42 174.1 124 67.7
Peaxi162Scf00100g01517 Petunia axillaris HOM05D007012 ORTHO05D008882 6.5e-42 174.1 119 68.9
SGA_v2.0_scaffold1G00245 Striga asiatica HOM05D007012 ORTHO05D008882 6.5e-42 174.1 118 71.2
Potri.011G098200 Populus trichocarpa HOM05D007012 ORTHO05D008882 8.5e-42 173.7 117 72.6
CANSAT11G0200 Cannabis sativa HOM05D007012 ORTHO05D008882 1.1e-41 173.3 119 70.6
Lsat_1_v5_gn_1_117760 Lactuca sativa HOM05D007012 ORTHO05D008882 1.1e-41 173.3 119 68.9
GSVIVG01021626001 Vitis vinifera HOM05D007012 ORTHO05D008882 1.1e-41 173.3 119 70.6
Sabra11G0090900 Salix brachista HOM05D007012 ORTHO05D008882 5.5e-41 171.0 117 72.6
TWI73G0699 Tripterygium wilfordii HOM05D007012 ORTHO05D008882 7.2e-41 170.6 119 69.7
Sabra11G0084700 Salix brachista HOM05D007012 ORTHO05D008882 1.6e-40 169.5 117 71.8
Glyma.05G166500 Glycine max HOM05D007012 ORTHO05D008882 2.1e-40 169.1 118 66.1
MD05G1273800 Malus domestica HOM05D007012 ORTHO05D008882 2.1e-40 169.1 117 70.9
PGR031G1292 Punica granatum HOM05D007012 ORTHO05D008882 2.1e-40 169.1 119 70.6
arahy.Tifrunner.gnm1.ann1.80D497 Arachis hypogaea HOM05D007012 ORTHO05D008882 2.7e-40 168.7 119 67.2
Migut.M00621 Erythranthe guttata HOM05D007012 ORTHO05D008882 2.7e-40 168.7 120 66.7
ECA248G1541 Erigeron canadensis HOM05D007012 ORTHO05D008882 3.6e-40 168.3 117 70.9
TWI09G0010 Tripterygium wilfordii HOM05D007012 ORTHO05D008882 3.6e-40 168.3 118 70.3
arahy.Tifrunner.gnm1.ann1.HAVC5G Arachis hypogaea HOM05D007012 ORTHO05D008882 4.7e-40 167.9 117 67.5
HanXRQChr15g0468791 Helianthus annuus HOM05D007012 ORTHO05D008882 4.7e-40 167.9 119 68.9
unitig_748.g7806 Utricularia gibba HOM05D007012 ORTHO05D008882 4.7e-40 167.9 118 67.8
MSTRG.7536 Avicennia marina HOM05D007012 ORTHO05D008882 6.1e-40 167.5 118 67.8
Eucgr.K01942 Eucalyptus grandis HOM05D007012 ORTHO05D008882 1.0e-39 166.8 119 68.9
Lj4g0006275 Lotus japonicus HOM05D007012 ORTHO05D008882 1.0e-39 166.8 117 65.8
Lalb_Chr12g0204651 Lupinus albus HOM05D007012 ORTHO05D008882 1.0e-39 166.8 119 65.5
AT3G29130 Arabidopsis thaliana HOM05D007012 ORTHO05D008882 1.8e-39 166.0 87 95.4
Migut.M01890 Erythranthe guttata HOM05D007012 ORTHO05D008882 1.8e-39 166.0 120 65.0
Migut.M01889 Erythranthe guttata HOM05D007012 ORTHO05D008882 3.0e-39 165.2 120 65.8
Medtr8g088380 Medicago truncatula HOM05D007012 ORTHO05D008882 3.9e-39 164.9 118 63.6
QL05p061674 Quercus lobata HOM05D007012 ORTHO05D008882 5.1e-39 164.5 150 58.0
TPR.G6804 Trifolium pratense HOM05D007012 ORTHO05D008882 6.7e-39 164.1 118 63.6
AUR62005835 Chenopodium quinoa HOM05D007012 ORTHO05D008882 8.8e-39 163.7 122 68.0
AUR62032828 Chenopodium quinoa HOM05D007012 ORTHO05D008882 8.8e-39 163.7 122 68.0
PSO675G5463 Papaver somniferum HOM05D007012 ORTHO05D008882 1.1e-38 163.3 119 66.4
HPP92_000966 Vanilla planifolia HOM05D007012 ORTHO05D008882 1.5e-38 162.9 117 65.0
Psat7g066160 Pisum sativum HOM05D007012 ORTHO05D008882 5.7e-38 161.0 118 62.7
PSO541G1654 Papaver somniferum HOM05D007012 ORTHO05D008882 7.4e-38 160.6 119 64.7
Ah.02g129420 Amaranthus hybridus HOM05D007012 ORTHO05D008882 1.3e-37 159.8 114 70.2
Phvul.002G246900 Phaseolus vulgaris HOM05D007012 ORTHO05D008882 1.7e-37 159.5 119 63.9
EL10Ac6g13254 Beta vulgaris HOM05D007012 ORTHO05D008882 4.1e-36 154.8 114 67.5
Hund20768 Selenicereus undatus HOM05D007012 ORTHO05D008882 4.1e-36 154.8 115 66.1
Sc24g0001360 Simmondsia chinensis HOM05D007012 ORTHO05D008882 4.1e-36 154.8 122 64.8
Sed0002894 Sechium edule HOM05D007012 ORTHO05D008882 1.2e-35 153.3 101 72.3
SalBow8G4607 Salvia bowleyana HOM05D007012 ORTHO05D008882 3.5e-35 151.8 134 56.0
Os03g0640400 Oryza sativa ssp. japonica HOM05D007012 ORTHO05D008882 2.5e-33 145.6 112 61.6
Zm00001eb218740 Zea mays HOM05D007012 ORTHO05D008882 2.7e-32 142.1 112 58.0
CDE08G0050 Ceratophyllum demersum HOM05D007012 ORTHO05D008882 3.6e-32 141.7 107 62.6
Migut.M00618 Erythranthe guttata HOM05D007012 ORTHO05D008882 6.1e-32 141.0 108 62.0
SEGI_30962 Sequoiadendron giganteum HOM05D007012 ORTHO05D008882 1.0e-31 140.2 115 59.1
Cfa000822 Carpinus fangiana HOM05D007012 ORTHO05D008882 1.1e-28 130.2 85 74.1
CsaV3_2G017990 Cucumis sativus L. HOM05D007012 ORTHO05D008882 3.1e-28 128.6 84 73.8
FAN11G2674 Fragaria x ananassa HOM05D007012 ORTHO05D008882 7.0e-28 127.5 85 74.1
FAN16G3160 Fragaria x ananassa HOM05D007012 ORTHO05D008882 7.0e-28 127.5 85 74.1
Aqoxy1G01570 Aquilegia oxysepala HOM05D007012 ORTHO05D008882 3.5e-27 125.2 88 67.0
Hma1.2p1_0333F.1_g128260 Hydrangea macrophylla HOM05D007012 ORTHO05D008882 4.5e-27 124.8 84 71.4
Pp3c17_18250 Physcomitrium patens HOM05D007012 ORTHO05D008882 1.3e-26 123.2 117 54.7
Oeu034103.1 Olea europaea HOM05D007012 ORTHO05D008882 2.9e-26 122.1 85 67.1
Mapoly0001s0437 Marchantia polymorpha HOM05D007012 ORTHO05D008882 1.5e-25 119.8 116 50.9
AagrBONN_evm.TU.Sc2ySwM_368.2441 Anthoceros agrestis HOM05D007012 ORTHO05D008882 4.2e-25 118.2 114 51.8
Haze_05817 Corylus avellana HOM05D007012 ORTHO05D008882 4.2e-25 118.2 88 65.9
CDE08G0396 Ceratophyllum demersum HOM05D007012 ORTHO05D008882 1.2e-24 116.7 94 58.5
VMungo0251G0322 Vigna mungo HOM05D007012 ORTHO05D008882 1.2e-24 116.7 85 62.4
SEGI_05812 Sequoiadendron giganteum HOM05D007012 ORTHO05D008882 4.0e-23 111.7 81 65.4
ATR0165G051 Amborella trichopoda HOM05D007012 ORTHO05D008882 2.6e-22 109.0 81 63.0
CBR_g52649 Chara braunii HOM05D007012 ORTHO05D008882 2.6e-22 109.0 106 48.1
AagrBONN_evm.TU.Sc2ySwM_117.2140 Anthoceros agrestis HOM05D007012 ORTHO05D008882 5.3e-20 101.3 85 57.6
Migut.M00617 Erythranthe guttata HOM05D007012 ORTHO05D008882 1.2e-19 100.1 117 43.6
Glyma.08G124500 Glycine max HOM05D007012 ORTHO05D008882 1.5e-14 83.2 54 68.5
Nn3g20226 Nelumbo nucifera HOM05D007012 ORTHO05D008882 1.6e-08 63.2 118 37.3
THA.LOC104805965 Tarenaya hassleriana HOM05D000199 ORTHO05D000550 3.0e-07 58.9 32 90.6


User provided reference genes

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