Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g17670 Schrenkiella parvula HOM05D008101 ORTHO05D010163 4.1e-30 134.4 87 100.0
AT3G29034 Arabidopsis thaliana HOM05D008101 ORTHO05D010163 9.5e-27 123.2 87 78.2
A06p40170 Brassica napus HOM05D008101 ORTHO05D010163 9.5e-27 123.2 87 77.0
BraA06t26932Z Brassica rapa HOM05D008101 ORTHO05D010163 9.5e-27 123.2 87 77.0
BcaC06g30874 Brassica carinata HOM05D008101 ORTHO05D010163 3.6e-26 121.3 88 85.2
AL5G18900 Arabidopsis lyrata HOM05D008101 ORTHO05D010163 8.1e-26 120.2 87 79.3
Carub.0005s0764 Capsella rubella HOM05D008101 ORTHO05D010163 8.1e-26 120.2 87 79.3
BcaC06g33664 Brassica carinata HOM05D008101 ORTHO05D010163 1.1e-25 119.8 88 78.4
BcaC06g33665 Brassica carinata HOM05D008101 ORTHO05D010163 1.1e-25 119.8 88 78.4
C07p37940 Brassica napus HOM05D008101 ORTHO05D010163 1.1e-25 119.8 88 78.4
BolC7t44316H Brassica oleracea HOM05D008101 ORTHO05D010163 1.1e-25 119.8 88 78.4
CARHR152140 Cardamine hirsuta HOM05D008101 ORTHO05D010163 1.1e-25 119.8 87 75.9
C02p56620 Brassica napus HOM05D008101 ORTHO05D010163 5.2e-25 117.5 88 88.6
BolC2t11574H Brassica oleracea HOM05D008101 ORTHO05D010163 5.2e-25 117.5 87 83.9
BcaC03g17658 Brassica carinata HOM05D008101 ORTHO05D010163 6.8e-25 117.1 88 78.4
BolC2t11721H Brassica oleracea HOM05D008101 ORTHO05D010163 6.8e-25 117.1 88 78.4
A02p36290 Brassica napus HOM05D008101 ORTHO05D010163 1.5e-24 115.9 88 87.5
BraA02t08628Z Brassica rapa HOM05D008101 ORTHO05D010163 1.5e-24 115.9 88 87.5
BcaC03g17547 Brassica carinata HOM05D008101 ORTHO05D010163 2.6e-24 115.2 87 82.8
C02p55260 Brassica napus HOM05D008101 ORTHO05D010163 2.6e-24 115.2 87 82.8
BcaB07g30101 Brassica carinata HOM05D008101 ORTHO05D010163 4.9e-23 110.9 88 84.1
Carub.0007s3631 Capsella rubella HOM05D008101 ORTHO05D010163 1.2e-18 96.3 87 65.5
Sp7g02370 Schrenkiella parvula HOM05D008101 ORTHO05D010163 1.6e-18 95.9 84 66.7
THA.LOC109116617 Tarenaya hassleriana HOM05D008101 ORTHO05D010163 2.8e-18 95.1 85 71.8
Aa31LG2G4160 Aethionema arabicum HOM05D008101 ORTHO05D010163 4.4e-16 87.8 57 78.9
Prupe.3G265300 Prunus persica HOM05D008101 ORTHO05D010163 1.3e-10 69.7 52 69.2
Gohir.D07G212050 Gossypium hirsutum HOM05D008101 ORTHO05D010163 6.2e-10 67.4 52 69.2
Gorai.001G239800 Gossypium raimondii HOM05D008101 ORTHO05D010163 6.2e-10 67.4 52 69.2
Glyma.13G062100 Glycine max HOM05D008101 ORTHO05D010163 8.1e-10 67.0 53 66.0
Gohir.A07G206000 Gossypium hirsutum HOM05D008101 ORTHO05D010163 8.1e-10 67.0 52 67.3
Potri.010G234200 Populus trichocarpa HOM05D008101 ORTHO05D010163 8.1e-10 67.0 52 69.2
Thecc.04G085600 Theobroma cacao HOM05D008101 ORTHO05D010163 8.1e-10 67.0 52 67.3
Lj2g0000476 Lotus japonicus HOM05D008101 ORTHO05D010163 1.4e-09 66.2 53 62.3
Sopen02g032840 Solanum pennellii HOM05D008101 ORTHO05D010163 2.4e-09 65.5 52 65.4
Medtr6g012640 Medicago truncatula HOM05D008101 ORTHO05D010163 3.1e-09 65.1 61 55.7
Cc07_g03530 Coffea canephora HOM05D008101 ORTHO05D010163 4.0e-09 64.7 51 64.7
MD09G1053300 Malus domestica HOM05D008101 ORTHO05D010163 4.0e-09 64.7 48 70.8
CAN.G206.165 Capsicum annuum HOM05D008101 ORTHO05D010163 6.9e-09 63.9 52 65.4
Solyc02g088130.1 Solanum lycopersicum HOM05D008101 ORTHO05D010163 1.5e-08 62.8 50 66.0
CSS0047461 Camellia sinensis var. sinensis HOM05D008101 ORTHO05D010163 2.6e-08 62.0 52 59.6
Dinv33773 Davidia involucrata HOM05D008101 ORTHO05D010163 3.4e-08 61.6 50 58.0
Migut.H00938 Erythranthe guttata HOM05D008101 ORTHO05D010163 3.4e-08 61.6 52 61.5
PGR083G0374 Punica granatum HOM05D008101 ORTHO05D010163 4.4e-08 61.2 52 61.5
Sed0001905 Sechium edule HOM05D008101 ORTHO05D010163 4.4e-08 61.2 52 59.6
CiPaw.03G024700 Carya illinoinensis HOM05D008101 ORTHO05D010163 2.2e-07 58.9 52 57.7
Manes.02G047600 Manihot esculenta HOM05D008101 ORTHO05D010163 2.2e-07 58.9 51 60.8
Phvul.004G030000 Phaseolus vulgaris HOM05D008101 ORTHO05D010163 2.2e-07 58.9 53 56.6
RcHm_v2.0_Chr2g0167541 Rosa chinensis HOM05D008101 ORTHO05D010163 3.8e-07 58.2 52 57.7
SalBow1G0549 Salvia bowleyana HOM05D008101 ORTHO05D010163 6.4e-07 57.4 52 61.5
SalBow1G6176 Salvia bowleyana HOM05D008101 ORTHO05D010163 6.4e-07 57.4 52 61.5
RcHm_v2.0_Chr2g0167501 Rosa chinensis HOM05D008101 ORTHO05D010163 8.4e-07 57.0 52 55.8
RcHm_v2.0_Chr2g0167591 Rosa chinensis HOM05D008101 ORTHO05D010163 1.4e-06 56.2 52 55.8
SalBow8G3752 Salvia bowleyana HOM05D008101 ORTHO05D010163 2.4e-06 55.5 52 59.6
Nn4g23220 Nelumbo nucifera HOM05D008101 ORTHO05D010163 3.2e-06 55.1 52 53.8
Os04g0460350 Oryza sativa ssp. japonica HOM05D008101 ORTHO05D010163 4.2e-06 54.7 52 57.7
Lsat_1_v5_gn_4_179321 Lactuca sativa HOM05D008101 ORTHO05D010163 7.1e-06 53.9 50 50.0
Lsat_1_v5_gn_4_182661 Lactuca sativa HOM05D008101 ORTHO05D010163 7.1e-06 53.9 50 50.0
Rhsim10G0036400 Rhododendron simsii HOM05D018356 ORTHO05D010163 7.1e-06 53.9 53 50.9
ClCG10G015220 Citrullus lanatus HOM05D008101 ORTHO05D010163 9.3e-06 53.5 48 60.4


User provided reference genes

Program Settings