Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g17640 Schrenkiella parvula HOM05D004915 ORTHO05D006048 1.1e-150 536.6 263 100.0
Thhalv10005292m.g Eutrema salsugineum HOM05D004915 ORTHO05D006048 7.3e-139 497.3 263 92.0
Carub.0005s0760 Capsella rubella HOM05D004915 ORTHO05D006048 1.2e-136 490.0 257 91.1
AL5G18870 Arabidopsis lyrata HOM05D004915 ORTHO05D006048 9.9e-136 486.9 263 89.0
BraA06t26934Z Brassica rapa HOM05D004915 ORTHO05D006048 8.4e-135 483.8 263 87.5
A06p40200 Brassica napus HOM05D004915 ORTHO05D006048 3.2e-134 481.9 263 87.1
BcaC06g33662 Brassica carinata HOM05D004915 ORTHO05D006048 7.4e-131 470.7 263 86.3
C07p37910 Brassica napus HOM05D004915 ORTHO05D006048 7.4e-131 470.7 263 86.3
BolC7t44312H Brassica oleracea HOM05D004915 ORTHO05D006048 9.6e-131 470.3 263 85.9
CARHR152100 Cardamine hirsuta HOM05D004915 ORTHO05D006048 9.6e-131 470.3 256 87.9
Aa31LG2G4180 Aethionema arabicum HOM05D004915 ORTHO05D006048 1.2e-125 453.4 259 82.6
Aa31LG9G16420 Aethionema arabicum HOM05D004915 ORTHO05D006048 4.0e-121 438.3 260 80.4
Sp7g02320 Schrenkiella parvula HOM05D004915 ORTHO05D006048 7.1e-118 427.6 261 78.2
CARHR262560 Cardamine hirsuta HOM05D004915 ORTHO05D006048 2.7e-117 425.6 256 78.5
Carub.0007s3626 Capsella rubella HOM05D004915 ORTHO05D006048 3.9e-116 421.8 260 76.5
Thhalv10027886m.g Eutrema salsugineum HOM05D004915 ORTHO05D006048 1.9e-115 419.5 261 75.9
BraA04t16903Z Brassica rapa HOM05D004915 ORTHO05D006048 9.0e-113 410.6 255 74.9
BolC4t26193H Brassica oleracea HOM05D004915 ORTHO05D006048 1.0e-111 407.1 261 74.3
A04p12400 Brassica napus HOM05D004915 ORTHO05D006048 5.0e-111 404.8 261 73.6
C04p46080 Brassica napus HOM05D004915 ORTHO05D006048 1.4e-110 403.3 261 73.2
THA.LOC104825807 Tarenaya hassleriana HOM05D004915 ORTHO05D006048 1.0e-103 380.6 282 68.1
Manes.01G092400 Manihot esculenta HOM05D004915 ORTHO05D006048 2.9e-103 379.0 254 67.3
Sabra17G0075000 Salix brachista HOM05D004915 ORTHO05D006048 1.9e-102 376.3 258 67.4
VMungo1383G0755 Vigna mungo HOM05D004915 ORTHO05D006048 1.2e-101 373.6 257 64.2
Dinv37673 Davidia involucrata HOM05D004915 ORTHO05D006048 1.6e-101 373.2 256 68.4
Phvul.008G037200 Phaseolus vulgaris HOM05D004915 ORTHO05D006048 1.6e-101 373.2 257 63.8
Potri.017G085100 Populus trichocarpa HOM05D004915 ORTHO05D006048 2.7e-101 372.5 259 66.4
TWI34G1631 Tripterygium wilfordii HOM05D004915 ORTHO05D006048 4.6e-101 371.7 255 67.8
Ciclev10012474m.g Citrus clementina HOM05D004915 ORTHO05D006048 7.9e-101 370.9 255 66.7
Atru.chr8.192 Acer truncatum HOM05D004915 ORTHO05D006048 3.0e-100 369.0 261 64.8
Glyma.09G236600 Glycine max HOM05D004915 ORTHO05D006048 6.7e-100 367.9 257 63.8
Aqoxy3G03429 Aquilegia oxysepala HOM05D004915 ORTHO05D006048 1.1e-99 367.1 260 64.2
Actinidia38781 Actinidia chinensis HOM05D004915 ORTHO05D006048 1.5e-99 366.7 262 65.3
Peaxi162Scf00241g00416 Petunia axillaris HOM05D004915 ORTHO05D006048 3.3e-99 365.5 261 63.6
PSO478G3309 Papaver somniferum HOM05D004915 ORTHO05D006048 4.4e-99 365.2 261 65.1
CSS0019190 Camellia sinensis var. sinensis HOM05D004915 ORTHO05D006048 2.2e-98 362.8 254 67.3
AT3G29010 Arabidopsis thaliana HOM05D004915 ORTHO05D006048 2.8e-98 362.5 189 91.0
Rhsim08G0070400 Rhododendron simsii HOM05D004915 ORTHO05D006048 3.7e-98 362.1 257 66.9
Actinidia38763 Actinidia chinensis HOM05D004915 ORTHO05D006048 4.8e-98 361.7 272 63.2
Cpa.g.sc179.53 Carica papaya HOM05D004915 ORTHO05D006048 4.8e-98 361.7 262 64.5
QL10p017218 Quercus lobata HOM05D004915 ORTHO05D006048 5.3e-97 358.2 253 64.8
arahy.Tifrunner.gnm1.ann1.BYQL86 Arachis hypogaea HOM05D004915 ORTHO05D006048 1.2e-96 357.1 248 65.3
Lj1g0024391 Lotus japonicus HOM05D004915 ORTHO05D006048 2.0e-96 356.3 250 63.2
Ca_02901_v3 Cicer arietinum L. HOM05D004915 ORTHO05D006048 3.4e-96 355.5 252 63.1
TAR622G0868 Trochodendron aralioides HOM05D004915 ORTHO05D006048 3.4e-96 355.5 258 62.4
TPR.G33578 Trifolium pratense HOM05D004915 ORTHO05D006048 5.9e-96 354.8 244 64.8
Thecc.03G090400 Theobroma cacao HOM05D004915 ORTHO05D006048 1.3e-95 353.6 256 62.9
ECA246G2050 Erigeron canadensis HOM05D004915 ORTHO05D006048 2.2e-95 352.8 254 63.0
MD06G1194800 Malus domestica HOM05D004915 ORTHO05D006048 2.9e-95 352.4 247 66.0
TPR.G39201 Trifolium pratense HOM05D004915 ORTHO05D006048 2.9e-95 352.4 244 63.9
MD14G1201800 Malus domestica HOM05D004915 ORTHO05D006048 6.5e-95 351.3 247 66.4
Solyc06g065310.3 Solanum lycopersicum HOM05D004915 ORTHO05D006048 8.5e-95 350.9 256 62.5
CiPaw.11G045800 Carya illinoinensis HOM05D004915 ORTHO05D006048 1.1e-94 350.5 254 64.2
Duzib205G1074 Durio zibethinus HOM05D004915 ORTHO05D006048 1.1e-94 350.5 254 61.8
Sopen06g023800 Solanum pennellii HOM05D004915 ORTHO05D006048 1.1e-94 350.5 248 63.7
BcaB06g27359 Brassica carinata HOM05D004915 ORTHO05D006048 1.4e-94 350.1 253 68.8
Eucgr.B00520 Eucalyptus grandis HOM05D004915 ORTHO05D006048 3.2e-94 349.0 254 61.8
RcHm_v2.0_Chr7g0181591 Rosa chinensis HOM05D004915 ORTHO05D006048 3.2e-94 349.0 257 61.9
CAN.G199.5 Capsicum annuum HOM05D004915 ORTHO05D006048 5.5e-94 348.2 248 62.5
Medtr1g111380 Medicago truncatula HOM05D004915 ORTHO05D006048 7.2e-94 347.8 253 60.5
Prupe.5G195000 Prunus persica HOM05D004915 ORTHO05D006048 7.2e-94 347.8 257 62.3
PGSC0003DMG400026111 Solanum tuberosum HOM05D004915 ORTHO05D006048 1.2e-93 347.1 248 61.7
GSVIVG01007990001 Vitis vinifera HOM05D004915 ORTHO05D006048 1.2e-93 347.1 254 61.4
Lj4A111T68 Lonicera japonica HOM05D004915 ORTHO05D006048 1.6e-93 346.7 272 60.3
Lj5C110T19 Lonicera japonica HOM05D004915 ORTHO05D006048 1.6e-93 346.7 253 61.7
Cfa018930 Carpinus fangiana HOM05D004915 ORTHO05D006048 2.1e-93 346.3 256 63.3
HanXRQChr08g0236601 Helianthus annuus HOM05D004915 ORTHO05D006048 3.6e-93 345.5 254 63.0
Hma1.2p1_0060F.1_g033670 Hydrangea macrophylla HOM05D004915 ORTHO05D006048 6.1e-93 344.7 254 61.4
Nitab4.5_0000121g0120 Nicotiana tabacum HOM05D004915 ORTHO05D006048 7.9e-93 344.4 251 61.4
Psat3g200280 Pisum sativum HOM05D004915 ORTHO05D006048 7.9e-93 344.4 248 63.7
TAR374G0666 Trochodendron aralioides HOM05D004915 ORTHO05D006048 7.9e-93 344.4 230 68.3
Cc04_g16470 Coffea canephora HOM05D004915 ORTHO05D006048 1.0e-92 344.0 254 61.8
HanXRQChr09g0247201 Helianthus annuus HOM05D004915 ORTHO05D006048 1.0e-92 344.0 254 62.6
Medtr7g011040 Medicago truncatula HOM05D004915 ORTHO05D006048 1.0e-92 344.0 244 61.5
MBI05_g33757_MAGBIO Magnolia biondii HOM05D004915 ORTHO05D006048 5.2e-92 341.7 253 63.6
Oeu058311.1 Olea europaea HOM05D004915 ORTHO05D006048 2.0e-91 339.7 255 60.8
FAN03G1016 Fragaria x ananassa HOM05D004915 ORTHO05D006048 5.7e-91 338.2 254 61.0
Lsat_1_v5_gn_9_27040 Lactuca sativa HOM05D004915 ORTHO05D006048 5.7e-91 338.2 256 62.1
SGA_v2.0_scaffold17G08101 Striga asiatica HOM05D004915 ORTHO05D006048 5.7e-91 338.2 250 62.8
FAN10G0297 Fragaria x ananassa HOM05D004915 ORTHO05D006048 7.4e-91 337.8 254 60.6
Lalb_Chr23g0265041 Lupinus albus HOM05D004915 ORTHO05D006048 9.7e-91 337.4 245 61.6
FvH4_7g07490 Fragaria vesca HOM05D004915 ORTHO05D006048 1.3e-90 337.0 254 61.0
Haze_07314 Corylus avellana HOM05D004915 ORTHO05D006048 1.4e-89 333.6 291 56.0
COL.COLO4_22946 Corchorus olitorius HOM05D004915 ORTHO05D006048 1.8e-89 333.2 244 61.1
MSTRG.15680 Avicennia marina HOM05D004915 ORTHO05D006048 3.1e-89 332.4 248 62.1
MBI05_g35466_MAGBIO Magnolia biondii HOM05D004915 ORTHO05D006048 4.1e-89 332.0 267 60.3
Peaxi162Scf00106g00016 Petunia axillaris HOM05D004915 ORTHO05D006048 4.1e-89 332.0 290 53.8
FAN04G1144 Fragaria x ananassa HOM05D004915 ORTHO05D006048 9.1e-89 330.9 248 61.7
AUR62021031 Chenopodium quinoa HOM05D004915 ORTHO05D006048 1.2e-88 330.5 252 59.1
FAN18G3490 Fragaria x ananassa HOM05D004915 ORTHO05D006048 1.2e-88 330.5 248 61.3
FAN08G1694 Fragaria x ananassa HOM05D004915 ORTHO05D006048 2.0e-88 329.7 248 61.3
Nn4g23203 Nelumbo nucifera HOM05D004915 ORTHO05D006048 2.0e-88 329.7 243 60.5
Migut.L00264 Erythranthe guttata HOM05D004915 ORTHO05D006048 3.5e-88 328.9 254 59.4
Oeu037787.1 Olea europaea HOM05D004915 ORTHO05D006048 5.9e-88 328.2 260 59.2
FvH4_5g14790 Fragaria vesca HOM05D004915 ORTHO05D006048 7.7e-88 327.8 248 61.3
Hund02640 Selenicereus undatus HOM05D004915 ORTHO05D006048 1.0e-87 327.4 261 56.3
FAN13G2234 Fragaria x ananassa HOM05D004915 ORTHO05D006048 2.9e-87 325.9 248 60.9
CSS0012692 Camellia sinensis var. sinensis HOM05D004915 ORTHO05D006048 3.8e-87 325.5 254 63.0
MELO3C001989.2 Cucumis melo HOM05D004915 ORTHO05D006048 1.9e-86 323.2 262 56.9
CsaV3_1G005570 Cucumis sativus L. HOM05D004915 ORTHO05D006048 1.6e-85 320.1 262 56.1
EL10Ac3g07299 Beta vulgaris HOM05D004915 ORTHO05D006048 2.1e-85 319.7 307 51.5
ClCG04G012190 Citrullus lanatus HOM05D004915 ORTHO05D006048 2.7e-85 319.3 254 57.5
CANSAT56G1541 Cannabis sativa HOM05D004915 ORTHO05D006048 3.6e-85 318.9 247 58.7
AUR62018412 Chenopodium quinoa HOM05D004915 ORTHO05D006048 4.7e-85 318.5 239 59.8
HPP92_002574 Vanilla planifolia HOM05D004915 ORTHO05D006048 6.7e-84 314.7 247 56.3
HPP92_002576 Vanilla planifolia HOM05D004915 ORTHO05D006048 6.7e-84 314.7 247 56.3
PGR083G1377 Punica granatum HOM05D004915 ORTHO05D006048 3.3e-83 312.4 224 63.8
Os08g0435800 Oryza sativa ssp. japonica HOM05D004915 ORTHO05D006048 2.8e-82 309.3 254 55.5
DCAR_015957 Daucus carota HOM05D004915 ORTHO05D006048 1.1e-81 307.4 247 57.9
Zm00001eb211140 Zea mays HOM05D004915 ORTHO05D006048 1.4e-81 307.0 255 55.3
SEGI_18610 Sequoiadendron giganteum HOM05D004915 ORTHO05D006048 1.0e-79 300.8 251 57.0
Mapoly0106s0015 Marchantia polymorpha HOM05D004915 ORTHO05D006048 1.8e-76 290.0 246 53.7
Pp3c2_33530 Physcomitrium patens HOM05D004915 ORTHO05D006048 1.6e-72 276.9 249 53.8
PGR031G1409 Punica granatum HOM05D004915 ORTHO05D006048 1.0e-71 274.2 201 60.7
Gorai.001G074400 Gossypium raimondii HOM05D004915 ORTHO05D006048 8.6e-71 271.2 199 61.3
Sed0011950 Sechium edule HOM05D004915 ORTHO05D006048 1.1e-70 270.8 188 65.4
Sc04g0002730 Simmondsia chinensis HOM05D004915 ORTHO05D006048 1.5e-70 270.4 169 70.4
Gohir.D07G070500 Gossypium hirsutum HOM05D004915 ORTHO05D006048 3.2e-70 269.2 199 60.8
AagrBONN_evm.TU.Sc2ySwM_344.3958 Anthoceros agrestis HOM05D004915 ORTHO05D006048 2.8e-69 266.2 228 51.8
CSS0012742 Camellia sinensis var. sinensis HOM05D004915 ORTHO05D006048 8.0e-69 264.6 257 51.8
Actinidia26226 Actinidia chinensis HOM05D004915 ORTHO05D006048 6.8e-68 261.5 242 53.3
SMO119G0486 Selaginella moellendorffii HOM05D004915 ORTHO05D006048 1.2e-64 250.8 222 50.5
ATR0626G227 Amborella trichopoda HOM05D004915 ORTHO05D006048 2.7e-64 249.6 193 57.5
AagrBONN_evm.TU.Sc2ySwM_362.689 Anthoceros agrestis HOM05D004915 ORTHO05D006048 8.3e-58 228.0 179 56.4
MCO14G534 Micromonas commoda HOM05D004915 ORTHO05D006048 2.3e-55 219.9 197 52.3
AagrBONN_evm.TU.Sc2ySwM_362.690 Anthoceros agrestis HOM05D004915 ORTHO05D006048 4.3e-54 215.7 170 56.5
HPP92_002578 Vanilla planifolia HOM05D006076 ORTHO05D007871 1.1e-52 211.1 247 42.5
QL06p014871 Quercus lobata HOM05D004915 ORTHO05D006048 3.1e-52 209.5 129 70.5
SMO164G0178 Selaginella moellendorffii HOM05D004915 ORTHO05D006048 1.4e-49 200.7 223 46.2
unitig_60.g25520 Utricularia gibba HOM05D004915 ORTHO05D006048 9.2e-49 198.0 262 42.4
Cre01.g053750 Chlamydomonas reinhardtii HOM05D004915 ORTHO05D006048 1.2e-48 197.6 216 44.9
HanXRQChr14g0437411 Helianthus annuus HOM05D004915 ORTHO05D006048 3.0e-47 193.0 130 67.7
vmacro05688 Vaccinium macrocarpon HOM05D004915 ORTHO05D006048 1.4e-44 184.1 143 59.4
HanXRQChr13g0408591 Helianthus annuus HOM05D004915 ORTHO05D006048 4.0e-44 182.6 126 65.9
Gohir.A07G066000 Gossypium hirsutum HOM05D004915 ORTHO05D006048 1.5e-43 180.6 138 60.1
CBR_g58409 Chara braunii HOM05D004915 ORTHO05D006048 1.7e-42 177.2 133 59.4
PRCOL_00000090 Prasinoderma coloniale HOM05D004915 ORTHO05D006048 5.4e-41 172.2 289 34.9
Nitab4.5_0004528g0010 Nicotiana tabacum HOM05D004915 ORTHO05D006048 2.1e-40 170.2 286 36.0
Nitab4.5_0005170g0010 Nicotiana tabacum HOM05D004915 ORTHO05D006048 4.6e-40 169.1 108 70.4
vmacro18186 Vaccinium macrocarpon HOM05D004915 ORTHO05D006048 6.0e-40 168.7 195 46.7
DCAR_026059 Daucus carota HOM05D004915 ORTHO05D006048 5.4e-33 145.6 117 53.8
FAN06G0706 Fragaria x ananassa HOM05D004915 ORTHO05D006048 6.0e-24 115.5 98 56.1
Ah.04g150570 Amaranthus hybridus HOM05D004915 ORTHO05D006048 1.5e-22 110.9 79 62.0
Nitab4.5_0005170g0060 Nicotiana tabacum HOM05D004915 ORTHO05D006048 2.4e-20 103.6 81 61.7
QL06p014899 Quercus lobata HOM05D004915 ORTHO05D006048 4.0e-20 102.8 65 66.2
ATR0642G001 Amborella trichopoda HOM05D004915 ORTHO05D006048 4.9e-18 95.9 60 73.3
DCAR_015961 Daucus carota HOM05D004915 ORTHO05D006048 6.7e-07 58.9 71 36.6
Pp3s30_306 Physcomitrium patens HOM05D004915 ORTHO05D043763 2.5e-06 57.0 164 26.8


User provided reference genes

Program Settings