Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g17510 Schrenkiella parvula HOM05D007472 ORTHO05D009477 0.0e+00 1529.6 768 100.0
Thhalv10003677m.g Eutrema salsugineum HOM05D007472 ORTHO05D009477 0.0e+00 1099.0 813 72.7
BcaB07g30111 Brassica carinata HOM05D007472 ORTHO05D009477 1.2e-309 1066.2 829 69.5
BcaC03g17537 Brassica carinata HOM05D007472 ORTHO05D009477 1.7e-305 1052.4 830 68.8
C02p55120 Brassica napus HOM05D007472 ORTHO05D009477 3.8e-305 1051.2 825 69.1
BolC2t11563H Brassica oleracea HOM05D007472 ORTHO05D009477 1.5e-304 1049.3 825 69.0
BraA02t08613Z Brassica rapa HOM05D007472 ORTHO05D009477 8.0e-295 1016.9 830 67.3
A02p36140 Brassica napus HOM05D007472 ORTHO05D009477 4.1e-291 1004.6 854 65.5
CARHR151910 Cardamine hirsuta HOM05D007472 ORTHO05D009477 1.2e-285 986.5 808 67.0
AL5G18670 Arabidopsis lyrata HOM05D007472 ORTHO05D009477 8.6e-281 970.3 814 66.5
Carub.0005s0743 Capsella rubella HOM05D007472 ORTHO05D009477 5.6e-264 914.4 815 62.3
Aa31LG2G4320 Aethionema arabicum HOM05D007472 ORTHO05D009477 1.7e-244 849.7 779 60.1
THA.LOC104805462 Tarenaya hassleriana HOM05D007472 ORTHO05D009477 1.3e-191 674.1 971 44.7
AT3G28880 Arabidopsis thaliana HOM05D007472 ORTHO05D009477 8.1e-170 601.7 510 63.7
Thhalv10009510m.g Eutrema salsugineum HOM05D007472 ORTHO05D009477 8.7e-140 501.9 425 67.3
Cfa007540 Carpinus fangiana HOM05D007472 ORTHO05D009477 9.3e-126 455.3 1001 32.9
Haze_14546 Corylus avellana HOM05D007472 ORTHO05D009477 6.7e-124 449.1 1015 32.9
Manes.01G090001 Manihot esculenta HOM05D007472 ORTHO05D009477 2.0e-120 437.6 1043 33.1
Gohir.A07G205200 Gossypium hirsutum HOM05D007472 ORTHO05D009477 1.7e-119 434.5 988 32.8
PGR142G1798 Punica granatum HOM05D007472 ORTHO05D009477 3.2e-118 430.3 955 32.6
Gohir.D07G211400 Gossypium hirsutum HOM05D007472 ORTHO05D009477 7.2e-118 429.1 1012 32.6
Thecc.04G080300 Theobroma cacao HOM05D007472 ORTHO05D009477 7.2e-118 429.1 1005 32.0
Gorai.001G238800 Gossypium raimondii HOM05D007472 ORTHO05D009477 9.4e-118 428.7 1012 32.5
QL04p014916 Quercus lobata HOM05D007472 ORTHO05D009477 1.4e-113 414.8 1001 32.0
QL04p014554 Quercus lobata HOM05D007472 ORTHO05D009477 9.1e-113 412.1 1001 31.9
Prupe.3G268600 Prunus persica HOM05D007472 ORTHO05D009477 1.3e-111 408.3 1065 30.3
TWI60G0556 Tripterygium wilfordii HOM05D007472 ORTHO05D009477 6.5e-111 406.0 975 32.4
MD09G1050300 Malus domestica HOM05D007472 ORTHO05D009477 7.2e-110 402.5 1051 30.7
SHI06832 Sapria himalayana HOM05D007472 ORTHO05D000001 2.9e-103 380.6 1041 29.9
RcHm_v2.0_Chr2g0168671 Rosa chinensis HOM05D007472 ORTHO05D009477 1.2e-101 375.2 1115 29.3
Potri.004G129100 Populus trichocarpa HOM05D007472 ORTHO05D009477 3.6e-101 373.6 1034 30.3
FvH4_6g48800 Fragaria vesca HOM05D007472 ORTHO05D009477 2.3e-100 370.9 1069 29.3
FAN02G3469 Fragaria x ananassa HOM05D007472 ORTHO05D009477 6.7e-100 369.4 1063 29.5
FAN05G4432 Fragaria x ananassa HOM05D007472 ORTHO05D009477 2.4e-97 360.9 1079 28.9
FAN09G3065 Fragaria x ananassa HOM05D007472 ORTHO05D009477 1.6e-96 358.2 1059 29.4
CANSAT64G0327 Cannabis sativa HOM05D007472 ORTHO05D009477 8.5e-95 352.4 838 31.5
Atru.chr8.142 Acer truncatum HOM05D007472 ORTHO05D009477 1.2e-93 348.6 938 29.7
AUR62039817 Chenopodium quinoa HOM05D007472 ORTHO05D009477 4.8e-90 336.7 1004 27.9
Ciclev10011009m.g Citrus clementina HOM05D007472 ORTHO05D009477 9.1e-89 332.4 953 29.7
EL10Ac2g02974 Beta vulgaris HOM05D007472 ORTHO05D009477 1.2e-85 322.0 1036 27.4
FvH4_6g49850 Fragaria vesca HOM05D007472 ORTHO05D009477 7.5e-83 312.8 431 45.2
GSVIVG01011394001 Vitis vinifera HOM05D007472 ORTHO05D009477 6.3e-82 309.7 786 31.7
BolC8t51634H Brassica oleracea HOM05D007472 ORTHO05D009477 8.3e-82 309.3 256 72.7
BcaC02g10318 Brassica carinata HOM05D001675 ORTHO05D001808 3.8e-79 300.4 256 69.9
FvH4_1g02370 Fragaria vesca HOM05D007472 ORTHO05D009477 1.8e-76 291.6 415 44.8
TAR622G0243 Trochodendron aralioides HOM05D007472 ORTHO05D009477 1.3e-74 285.4 418 43.5
CiPaw.03G027700 Carya illinoinensis HOM05D007472 ORTHO05D009477 1.6e-72 278.5 780 29.6
MBI14_g12118_MAGBIO Magnolia biondii HOM05D007472 ORTHO05D009477 1.5e-70 271.9 1044 26.1
Duzib147G0661 Durio zibethinus HOM05D007472 ORTHO05D009477 1.8e-68 265.0 877 28.7
FAN14G2920 Fragaria x ananassa HOM05D007472 ORTHO05D009477 2.0e-67 261.5 428 40.7
AUR62034398 Chenopodium quinoa HOM05D007472 ORTHO05D009477 1.5e-62 245.4 867 26.5
Aqoxy1G01920 Aquilegia oxysepala HOM05D007472 ORTHO05D009477 5.6e-62 243.4 998 26.6
Zm00001eb029370 Zea mays HOM05D007472 ORTHO05D009477 4.0e-60 237.3 360 41.7
Os12g0572800 Oryza sativa ssp. japonica HOM05D007472 ORTHO05D009477 8.9e-60 236.1 359 42.6
SEGI_07251 Sequoiadendron giganteum HOM05D007472 ORTHO05D009477 1.0e-55 222.6 415 36.9
ATR0037G017 Amborella trichopoda HOM05D007472 ORTHO05D009477 6.6e-55 219.9 408 37.0
Cpa.g.sc1057.1 Carica papaya HOM05D007472 ORTHO05D009477 4.7e-53 213.8 352 38.1
Aqoxy1G01781 Aquilegia oxysepala HOM05D007472 ORTHO05D009477 3.4e-51 207.6 824 28.3
AT3G28875 Arabidopsis thaliana HOM05D007472 ORTHO05D009477 3.2e-49 201.1 160 65.0
C08p40690 Brassica napus HOM05D007472 ORTHO05D009477 2.1e-48 198.4 181 68.0
BcaC07g41068 Brassica carinata HOM05D007472 ORTHO05D009477 7.8e-48 196.4 158 69.0
TAR622G0195 Trochodendron aralioides HOM05D007472 ORTHO05D009477 4.3e-46 190.7 322 38.8
Nn3g17438 Nelumbo nucifera HOM05D007472 ORTHO05D009477 2.6e-35 154.8 325 32.3
RcHm_v2.0_Chr2g0170061 Rosa chinensis HOM05D007472 ORTHO05D009477 4.9e-34 150.6 214 46.7
RcHm_v2.0_Chr6g0246231 Rosa chinensis HOM05D007472 ORTHO05D009477 4.6e-32 144.1 186 43.0
Hund13216 Selenicereus undatus HOM05D007472 ORTHO05D009477 4.6e-32 144.1 127 58.3
EL10Ac1g01538 Beta vulgaris HOM05D007472 ORTHO05D009477 6.2e-29 133.7 141 51.1
FAN14G0482 Fragaria x ananassa HOM05D007472 ORTHO05D009477 1.8e-28 132.1 251 40.2
CDE04G1619 Ceratophyllum demersum HOM05D007472 ORTHO05D009477 2.7e-24 118.2 268 32.5
Os12g0587100 Oryza sativa ssp. japonica HOM05D007472 ORTHO05D009477 2.7e-24 118.2 412 27.7
CBR_g32589 Chara braunii HOM05D007472 ORTHO05D009477 5.6e-22 110.5 572 25.0
Mapoly0003s0158 Marchantia polymorpha HOM05D007472 ORTHO05D009477 6.9e-20 103.6 480 24.4
SMO244G0018 Selaginella moellendorffii HOM05D007472 ORTHO05D009477 2.2e-18 98.6 287 29.6
SMO117G0184 Selaginella moellendorffii HOM05D007472 ORTHO05D009477 1.1e-17 96.3 421 26.6
Mapoly0010s0140 Marchantia polymorpha HOM05D007472 ORTHO05D009477 2.5e-17 95.1 104 47.1
Mapoly0010s0146 Marchantia polymorpha HOM05D007472 ORTHO05D009477 3.2e-17 94.7 104 47.1
Pp3c3_9890 Physcomitrium patens HOM05D007472 ORTHO05D009477 5.5e-17 94.0 84 56.0
AagrBONN_evm.TU.Sc2ySwM_344.3065 Anthoceros agrestis HOM05D007472 ORTHO05D009477 7.1e-17 93.6 86 52.3
Pp3c7_7390 Physcomitrium patens HOM05D007472 ORTHO05D009477 1.2e-16 92.8 163 36.8
SEGI_35223 Sequoiadendron giganteum HOM05D007472 ORTHO05D009477 2.7e-16 91.7 130 40.8
EL10Ac2g03267 Beta vulgaris HOM05D007472 ORTHO05D009477 4.6e-16 90.9 92 53.3
Pp3c11_18760 Physcomitrium patens HOM05D007472 ORTHO05D009477 1.3e-15 89.4 219 31.5
SMO244G0049 Selaginella moellendorffii HOM05D007472 ORTHO05D009477 1.8e-15 89.0 124 41.9
Mapoly0213s0013 Marchantia polymorpha HOM05D007472 ORTHO05D009477 2.3e-15 88.6 135 40.7
CANSAT35G1746 Cannabis sativa HOM05D007472 ORTHO05D009477 3.9e-15 87.8 115 47.0
RcHm_v2.0_Chr2g0170071 Rosa chinensis HOM05D007472 ORTHO05D009477 6.7e-15 87.0 90 44.4
RcHm_v2.0_Chr6g0246241 Rosa chinensis HOM05D007472 ORTHO05D009477 6.7e-15 87.0 138 38.4
BolC4t24572H Brassica oleracea HOM05D007472 ORTHO05D009477 1.9e-14 85.5 69 69.6
Mapoly0163s0008 Marchantia polymorpha HOM05D007472 ORTHO05D009477 1.3e-13 82.8 86 45.3
C08p40680 Brassica napus HOM05D007472 ORTHO05D009477 2.1e-13 82.0 46 82.6
FvH4_6g49030 Fragaria vesca HOM05D007472 ORTHO05D009477 6.3e-13 80.5 108 42.6
Dinv12600 Davidia involucrata HOM05D008239 ORTHO05D009800 3.1e-12 78.2 278 30.6
Dinv25412 Davidia involucrata HOM05D008239 ORTHO05D009800 4.1e-12 77.8 269 29.7
AUR62034397 Chenopodium quinoa HOM05D007472 ORTHO05D009477 5.9e-11 73.9 103 36.9
Dinv12606 Davidia involucrata HOM05D008239 ORTHO05D009800 1.0e-10 73.2 229 31.4
Dinv30486 Davidia involucrata HOM05D010983 ORTHO05D009800 1.0e-10 73.2 274 25.5
Dinv38087 Davidia involucrata HOM05D008239 ORTHO05D009800 2.9e-10 71.6 259 26.6
Aqoxy1G01780 Aquilegia oxysepala HOM05D007472 ORTHO05D009477 5.0e-10 70.9 132 31.1
Dinv04007 Davidia involucrata HOM05D008239 ORTHO05D009800 8.4e-10 70.1 278 25.2
Dinv25440 Davidia involucrata HOM05D008239 ORTHO05D009800 8.4e-10 70.1 245 27.3
Rhsim03G0008000 Rhododendron simsii HOM05D008239 ORTHO05D009800 8.4e-10 70.1 232 33.2
Dinv23281 Davidia involucrata HOM05D008239 ORTHO05D009800 1.1e-09 69.7 276 27.9
vmacro22053 Vaccinium macrocarpon HOM05D008239 ORTHO05D009800 7.9e-08 63.5 294 23.8
Dinv07268 Davidia involucrata HOM05D008239 ORTHO05D009800 3.0e-07 61.6 171 29.8
Rhsim06G0231700 Rhododendron simsii HOM05D008239 ORTHO05D009800 3.0e-07 61.6 217 29.5
Dinv41765 Davidia involucrata HOM05D008239 ORTHO05D009800 3.3e-06 58.2 146 30.1
FAN09G4693 Fragaria x ananassa HOM05D007472 ORTHO05D009477 7.4e-06 57.0 74 40.5


User provided reference genes

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