Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g17410 Schrenkiella parvula HOM05D006074 ORTHO05D008728 1.2e-242 842.8 429 100.0
BolC7t44287H Brassica oleracea HOM05D006074 ORTHO05D008728 2.1e-204 715.7 431 87.0
BraA06t26953Z Brassica rapa HOM05D006074 ORTHO05D008728 3.7e-204 714.9 431 86.3
BcaC06g33639 Brassica carinata HOM05D006074 ORTHO05D008728 5.3e-203 711.1 431 86.5
AT3G28760 Arabidopsis thaliana HOM05D006074 ORTHO05D008728 2.6e-202 708.8 430 85.6
C07p37700 Brassica napus HOM05D006074 ORTHO05D008728 1.5e-197 693.0 406 88.7
A06p40350 Brassica napus HOM05D006074 ORTHO05D008728 6.9e-195 684.1 406 86.9
BcaC06g30896 Brassica carinata HOM05D006074 ORTHO05D008728 3.4e-186 655.2 365 91.0
Aa31LG2G4460 Aethionema arabicum HOM05D006074 ORTHO05D008728 2.9e-185 652.1 404 82.2
THA.LOC104823933 Tarenaya hassleriana HOM05D006074 ORTHO05D008728 1.0e-182 643.7 431 77.3
Carub.0005s0731 Capsella rubella HOM05D006074 ORTHO05D008728 2.0e-181 639.4 366 88.3
AL5G18490 Arabidopsis lyrata HOM05D006074 ORTHO05D008728 3.7e-180 635.2 369 88.1
Thhalv10004593m.g Eutrema salsugineum HOM05D006074 ORTHO05D008728 3.7e-156 555.4 321 90.0
Thecc.04G099800 Theobroma cacao HOM05D006074 ORTHO05D008728 1.8e-147 526.6 375 70.4
Duzib187G1598 Durio zibethinus HOM05D006074 ORTHO05D008728 5.4e-147 525.0 400 68.0
Gohir.A07G215200 Gossypium hirsutum HOM05D006074 ORTHO05D008728 7.7e-146 521.2 394 68.3
Prupe.3G270100 Prunus persica HOM05D006074 ORTHO05D008728 2.9e-145 519.2 356 71.3
CiPaw.03G029000 Carya illinoinensis HOM05D006074 ORTHO05D008728 3.3e-144 515.8 395 66.1
GSVIVG01011374001 Vitis vinifera HOM05D006074 ORTHO05D008728 4.2e-144 515.4 413 64.4
Potri.017G080300 Populus trichocarpa HOM05D006074 ORTHO05D008728 5.5e-144 515.0 393 66.4
Sabra17G0072000 Salix brachista HOM05D006074 ORTHO05D008728 7.2e-144 514.6 355 70.4
TAR622G0709 Trochodendron aralioides HOM05D006074 ORTHO05D008728 4.7e-143 511.9 353 71.4
TAR729G0002 Trochodendron aralioides HOM05D006074 ORTHO05D008728 4.7e-143 511.9 353 71.4
MD09G1048800 Malus domestica HOM05D006074 ORTHO05D008728 6.1e-143 511.5 372 68.5
QL02p081203 Quercus lobata HOM05D006074 ORTHO05D008728 5.2e-142 508.4 411 63.0
FAN02G2663 Fragaria x ananassa HOM05D006074 ORTHO05D008728 6.8e-142 508.1 394 65.2
Hma1.2p1_0449F.1_g155300 Hydrangea macrophylla HOM05D006074 ORTHO05D008728 8.9e-142 507.7 366 68.6
Gorai.001G256400 Gossypium raimondii HOM05D006074 ORTHO05D008728 1.2e-141 507.3 427 62.8
RcHm_v2.0_Chr2g0168871 Rosa chinensis HOM05D006074 ORTHO05D008728 5.7e-141 505.0 381 66.7
FvH4_6g49080 Fragaria vesca HOM05D006074 ORTHO05D008728 7.5e-141 504.6 368 68.2
Psat1g075640 Pisum sativum HOM05D006074 ORTHO05D008728 7.5e-141 504.6 355 70.7
Lj2g0007765 Lotus japonicus HOM05D006074 ORTHO05D008728 2.2e-140 503.1 355 70.1
PSO832G2479 Papaver somniferum HOM05D006074 ORTHO05D008728 2.2e-140 503.1 353 69.7
Lalb_Chr21g0318901 Lupinus albus HOM05D006074 ORTHO05D008728 3.7e-140 502.3 367 68.7
Cpa.g.sc14.19 Carica papaya HOM05D006074 ORTHO05D008728 4.9e-140 501.9 460 58.5
PSO591G0110 Papaver somniferum HOM05D006074 ORTHO05D008728 6.3e-140 501.5 354 69.2
Medtr1g039990 Medicago truncatula HOM05D006074 ORTHO05D008728 8.3e-140 501.1 355 69.6
arahy.Tifrunner.gnm1.ann1.V4TPJI Arachis hypogaea HOM05D006074 ORTHO05D008728 1.8e-139 500.0 369 68.3
PGR083G0972 Punica granatum HOM05D006074 ORTHO05D008728 2.4e-139 499.6 398 64.6
arahy.Tifrunner.gnm1.ann1.1Y4ZQN Arachis hypogaea HOM05D006074 ORTHO05D008728 3.1e-139 499.2 354 70.3
COL.COLO4_36112 Corchorus olitorius HOM05D006074 ORTHO05D008728 7.0e-139 498.0 343 72.6
Lsat_1_v5_gn_4_177200 Lactuca sativa HOM05D006074 ORTHO05D008728 1.6e-138 496.9 356 68.8
Lju41C23G10 Lonicera japonica HOM05D006074 ORTHO05D008728 1.6e-138 496.9 354 69.8
Phvul.004G027100 Phaseolus vulgaris HOM05D006074 ORTHO05D008728 2.0e-138 496.5 354 70.1
CSS0024892 Camellia sinensis var. sinensis HOM05D006074 ORTHO05D008728 2.7e-138 496.1 371 67.1
Oeu060929.1 Olea europaea HOM05D006074 ORTHO05D008728 2.7e-138 496.1 405 63.5
vmacro18203 Vaccinium macrocarpon HOM05D006074 ORTHO05D008728 2.7e-138 496.1 376 65.7
Actinidia02708 Actinidia chinensis HOM05D006074 ORTHO05D008728 7.8e-138 494.6 353 69.7
Gohir.D07G222100 Gossypium hirsutum HOM05D006074 ORTHO05D008728 7.8e-138 494.6 394 65.7
Rhsim08G0067900 Rhododendron simsii HOM05D006074 ORTHO05D008728 1.7e-137 493.4 376 64.9
MBI02_g10680_MAGBIO Magnolia biondii HOM05D006074 ORTHO05D008728 8.6e-137 491.1 367 66.2
CANSAT64G1183 Cannabis sativa HOM05D006074 ORTHO05D008728 1.5e-136 490.3 355 69.0
ClCG10G014940 Citrullus lanatus HOM05D006074 ORTHO05D008728 1.5e-136 490.3 374 66.6
HanXRQChr09g0265461 Helianthus annuus HOM05D006074 ORTHO05D008728 1.5e-136 490.3 355 67.0
CsaV3_3G041590 Cucumis sativus L. HOM05D006074 ORTHO05D008728 7.3e-136 488.0 371 66.0
Aqoxy3G03321 Aquilegia oxysepala HOM05D006074 ORTHO05D008728 1.2e-135 487.3 353 67.7
CSS0026498 Camellia sinensis var. sinensis HOM05D006074 ORTHO05D008728 1.2e-135 487.3 371 66.6
SalBow1G4287 Salvia bowleyana HOM05D006074 ORTHO05D008728 1.6e-135 486.9 358 66.2
ATR0564G024 Amborella trichopoda HOM05D006074 ORTHO05D008728 2.8e-135 486.1 355 66.5
Migut.H00904 Erythranthe guttata HOM05D006074 ORTHO05D008728 4.7e-135 485.3 355 66.8
Eucgr.J01218 Eucalyptus grandis HOM05D006074 ORTHO05D008728 6.1e-135 485.0 367 66.2
CANSAT64G2140 Cannabis sativa HOM05D006074 ORTHO05D008728 8.0e-135 484.6 410 62.0
TWI34G1337 Tripterygium wilfordii HOM05D006074 ORTHO05D008728 1.8e-134 483.4 420 61.0
Sc14g0005980 Simmondsia chinensis HOM05D006074 ORTHO05D008728 4.0e-134 482.3 409 60.6
MELO3C009883.2 Cucumis melo HOM05D006074 ORTHO05D008728 8.9e-134 481.1 354 67.5
VMungo0464G0585 Vigna mungo HOM05D006074 ORTHO05D008728 7.5e-133 478.0 338 69.5
Atru.BG.207.p Acer truncatum HOM05D006074 ORTHO05D008728 9.8e-133 477.6 352 68.2
PGSC0003DMG400009217 Solanum tuberosum HOM05D006074 ORTHO05D008728 1.2e-130 470.7 355 64.8
Sopen03g012680 Solanum pennellii HOM05D006074 ORTHO05D008728 2.0e-130 469.9 355 64.8
CAN.G579.8 Capsicum annuum HOM05D006074 ORTHO05D008728 6.0e-130 468.4 380 62.4
ECA232G4667 Erigeron canadensis HOM05D006074 ORTHO05D008728 7.8e-130 468.0 347 67.1
Solyc03g058860.3 Solanum lycopersicum HOM05D006074 ORTHO05D008728 2.3e-129 466.5 355 64.5
AUR62038861 Chenopodium quinoa HOM05D006074 ORTHO05D008728 5.6e-128 461.8 369 61.5
DCAR_021653 Daucus carota HOM05D006074 ORTHO05D008728 7.3e-128 461.5 355 63.9
AUR62031615 Chenopodium quinoa HOM05D006074 ORTHO05D008728 1.2e-127 460.7 369 61.8
Sed0009974 Sechium edule HOM05D006074 ORTHO05D008728 1.6e-127 460.3 342 66.1
EL10Ac2g02949 Beta vulgaris HOM05D006074 ORTHO05D008728 6.2e-127 458.4 354 61.9
Cc07_g03180 Coffea canephora HOM05D006074 ORTHO05D008728 3.1e-126 456.1 353 64.3
Glyma.19G020800 Glycine max HOM05D006074 ORTHO05D008728 5.2e-126 455.3 388 61.6
CSS0026374 Camellia sinensis var. sinensis HOM05D006074 ORTHO05D008728 1.5e-125 453.8 362 64.6
CSS0037615 Camellia sinensis var. sinensis HOM05D006074 ORTHO05D008728 2.0e-125 453.4 360 63.9
Hund15626 Selenicereus undatus HOM05D006074 ORTHO05D008728 2.0e-125 453.4 359 64.9
Nn4g23084 Nelumbo nucifera HOM05D006074 ORTHO05D008728 3.4e-125 452.6 320 70.0
Os03g0170300 Oryza sativa ssp. japonica HOM05D006074 ORTHO05D008728 1.4e-123 447.2 373 62.2
Dinv33738 Davidia involucrata HOM05D006074 ORTHO05D008728 2.4e-123 446.4 395 57.5
TPR.G10370 Trifolium pratense HOM05D006074 ORTHO05D008728 6.6e-121 438.3 315 67.6
Zm00001eb402270 Zea mays HOM05D006074 ORTHO05D008728 4.7e-119 432.2 354 62.7
Nitab4.5_0003081g0050 Nicotiana tabacum HOM05D006074 ORTHO05D008728 1.4e-118 430.6 311 68.8
Nitab4.5_0000002g0350 Nicotiana tabacum HOM05D006074 ORTHO05D008728 1.8e-118 430.3 320 67.2
SGA_v2.0_scaffold59G20672 Striga asiatica HOM05D006074 ORTHO05D008728 1.7e-116 423.7 317 65.3
Ca_04272_v3 Cicer arietinum L. HOM05D006074 ORTHO05D008728 6.4e-116 421.8 321 66.0
Manes.15G177000 Manihot esculenta HOM05D006074 ORTHO05D008728 1.2e-114 417.5 273 72.5
Peaxi162Scf00451g00822 Petunia axillaris HOM05D006074 ORTHO05D008728 2.5e-112 409.8 299 68.2
CARHR151760 Cardamine hirsuta HOM05D006074 ORTHO05D008728 5.1e-105 385.6 285 74.4
Pp3c9_19570 Physcomitrium patens HOM05D006074 ORTHO05D008728 1.1e-104 384.4 354 53.1
AagrBONN_evm.TU.Sc2ySwM_228.462 Anthoceros agrestis HOM05D006074 ORTHO05D008728 1.5e-104 384.0 355 55.5
Pp3c10_1080 Physcomitrium patens HOM05D006074 ORTHO05D008728 9.0e-102 374.8 359 52.9
Mapoly0005s0075 Marchantia polymorpha HOM05D006074 ORTHO05D008728 5.4e-99 365.5 347 53.0
unitig_21.g20922 Utricularia gibba HOM05D006074 ORTHO05D008728 4.3e-88 329.3 274 59.5
Pp3c15_19890 Physcomitrium patens HOM05D006074 ORTHO05D008728 1.3e-81 307.8 356 46.3
Glyma.13G064100 Glycine max HOM05D006074 ORTHO05D008728 1.5e-80 304.3 259 62.2
CDE02G2631 Ceratophyllum demersum HOM05D006074 ORTHO05D008728 1.9e-80 303.9 256 57.8
Ciclev10012867m.g Citrus clementina HOM05D006074 ORTHO05D008728 7.4e-80 302.0 188 79.3
FAN14G0759 Fragaria x ananassa HOM05D006074 ORTHO05D008728 4.0e-78 296.2 377 47.2
MCO08G127 Micromonas commoda HOM05D006074 ORTHO05D008728 9.0e-70 268.5 362 44.2
Lsat_1_v5_gn_4_177220 Lactuca sativa HOM05D006074 ORTHO05D008728 3.8e-68 263.1 182 73.1
SEGI_14685 Sequoiadendron giganteum HOM05D006074 ORTHO05D008728 5.5e-67 259.2 184 65.2
Pp3c1_20750 Physcomitrium patens HOM05D006074 ORTHO05D020966 2.1e-66 257.3 411 36.7
Pp3c1_20753 Physcomitrium patens HOM05D006074 ORTHO05D020966 2.1e-66 257.3 411 36.7
Pp3c2_18540 Physcomitrium patens HOM05D006074 ORTHO05D020966 1.1e-64 251.5 450 34.9
Cre05.g248250 Chlamydomonas reinhardtii HOM05D006074 ORTHO05D008728 6.1e-58 229.2 475 35.2
Pp3c10_2120 Physcomitrium patens HOM05D006074 ORTHO05D020966 1.3e-52 211.5 534 27.9
PRCOL_00003957 Prasinoderma coloniale HOM05D006074 ORTHO05D008728 4.8e-47 193.0 359 37.0
Haze_18216 Corylus avellana HOM05D000132 ORTHO05D000058 2.2e-39 167.5 152 55.9
Lsat_1_v5_gn_0_26800 Lactuca sativa HOM05D006074 ORTHO05D008728 9.4e-35 152.1 139 48.9
Lsat_1_v5_gn_3_53141 Lactuca sativa HOM05D006074 ORTHO05D008728 2.4e-30 137.5 125 49.6
Sabra17G0081400 Salix brachista HOM05D006074 ORTHO05D008728 1.1e-19 102.1 71 69.0
Pp3c20_4730 Physcomitrium patens HOM05D006074 ORTHO05D026055 1.2e-18 98.6 173 36.4
Pp3c23_20410 Physcomitrium patens HOM05D006074 ORTHO05D026055 6.2e-18 96.3 180 36.1
Atru.chr3.96 Acer truncatum HOM05D006074 ORTHO05D026256 1.0e-17 95.5 66 69.7
Pp3c8_20190 Physcomitrium patens HOM05D006074 ORTHO05D026055 4.4e-16 90.1 172 36.6
CDE02G1972 Ceratophyllum demersum HOM05D006074 ORTHO05D026256 1.7e-15 88.2 65 64.6
Pp3c20_10280 Physcomitrium patens HOM05D006074 ORTHO05D026055 6.4e-15 86.3 175 32.0
PGSC0003DMG400013970 Solanum tuberosum HOM05D006074 ORTHO05D008728 1.2e-13 82.0 61 59.0
Actinidia17537 Actinidia chinensis HOM05D006074 ORTHO05D026256 2.0e-13 81.3 61 63.9
HanXRQChr09g0253281 Helianthus annuus HOM05D006074 ORTHO05D008728 3.3e-11 73.9 53 73.6


User provided reference genes

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