Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g17320 Schrenkiella parvula HOM05D005719 ORTHO05D007030 3.9e-271 937.6 484 100.0
Thhalv10004086m.g Eutrema salsugineum HOM05D005719 ORTHO05D007030 5.5e-249 864.0 490 91.2
BcaC06g30902 Brassica carinata HOM05D005719 ORTHO05D007030 6.1e-240 833.9 487 87.7
AL5G18300 Arabidopsis lyrata HOM05D005719 ORTHO05D007030 1.4e-231 806.2 491 85.5
A06p40410 Brassica napus HOM05D005719 ORTHO05D007030 3.3e-230 801.6 491 83.9
BraA06t26959Z Brassica rapa HOM05D005719 ORTHO05D007030 3.3e-230 801.6 491 83.9
AT3G28670 Arabidopsis thaliana HOM05D005719 ORTHO05D007030 4.4e-230 801.2 492 84.1
BcaC06g33632 Brassica carinata HOM05D005719 ORTHO05D007030 1.7e-229 799.3 490 84.7
C07p37630 Brassica napus HOM05D005719 ORTHO05D007030 4.8e-229 797.7 490 84.7
CARHR286650 Cardamine hirsuta HOM05D005719 ORTHO05D007030 4.1e-228 794.7 493 84.0
BolC7t44279H Brassica oleracea HOM05D005719 ORTHO05D007030 1.2e-227 793.1 491 84.5
Carub.0005s0719 Capsella rubella HOM05D005719 ORTHO05D007030 1.0e-226 790.0 487 84.2
Aa31LG2G4530 Aethionema arabicum HOM05D005719 ORTHO05D007030 3.0e-207 725.3 492 79.3
THA.LOC104805699 Tarenaya hassleriana HOM05D005719 ORTHO05D007030 8.6e-186 654.1 488 69.7
THA.LOC104823811 Tarenaya hassleriana HOM05D005719 ORTHO05D007030 3.1e-183 645.6 489 68.7
Duzib093G1837 Durio zibethinus HOM05D005719 ORTHO05D007030 3.3e-161 572.4 484 61.4
Gohir.A05G217800 Gossypium hirsutum HOM05D005719 ORTHO05D007030 1.4e-159 567.0 490 60.2
Gorai.009G226700 Gossypium raimondii HOM05D005719 ORTHO05D007030 2.6e-158 562.8 490 60.0
Thecc.08G076500 Theobroma cacao HOM05D005719 ORTHO05D007030 3.4e-158 562.4 490 60.6
Gohir.D05G219700 Gossypium hirsutum HOM05D005719 ORTHO05D007030 1.2e-155 553.9 490 59.6
TWI56G1147 Tripterygium wilfordii HOM05D005719 ORTHO05D007030 4.6e-155 552.0 492 59.6
Sabra02G0085500 Salix brachista HOM05D005719 ORTHO05D007030 1.3e-154 550.4 494 58.9
Manes.18G055200 Manihot esculenta HOM05D005719 ORTHO05D007030 2.3e-154 549.7 497 58.4
MD08G1208600 Malus domestica HOM05D005719 ORTHO05D007030 2.8e-152 542.7 494 58.1
Prupe.1G540100 Prunus persica HOM05D005719 ORTHO05D007030 2.8e-152 542.7 494 58.5
MD15G1392600 Malus domestica HOM05D005719 ORTHO05D007030 5.3e-151 538.5 494 57.7
CiPaw.08G058000 Carya illinoinensis HOM05D005719 ORTHO05D007030 7.6e-150 534.6 485 57.7
Ciclev10000979m.g Citrus clementina HOM05D005719 ORTHO05D007030 1.3e-149 533.9 483 58.0
RcHm_v2.0_Chr7g0233191 Rosa chinensis HOM05D005719 ORTHO05D007030 4.2e-148 528.9 498 57.2
Haze_22505 Corylus avellana HOM05D005719 ORTHO05D007030 7.1e-148 528.1 513 55.2
Cpa.g.sc177.3 Carica papaya HOM05D005719 ORTHO05D007030 1.6e-147 526.9 403 66.7
CANSAT21G2028 Cannabis sativa HOM05D005719 ORTHO05D007030 2.1e-147 526.6 489 56.6
CiPaw.07G161600 Carya illinoinensis HOM05D005719 ORTHO05D007030 2.7e-147 526.2 466 58.8
QL12p040011 Quercus lobata HOM05D005719 ORTHO05D007030 8.7e-146 521.2 496 58.9
GSVIVG01009231001 Vitis vinifera HOM05D005719 ORTHO05D007030 4.3e-145 518.8 434 61.3
vmacro04622 Vaccinium macrocarpon HOM05D005719 ORTHO05D007030 4.8e-144 515.4 487 55.6
arahy.Tifrunner.gnm1.ann1.SLT0HR Arachis hypogaea HOM05D005719 ORTHO05D007030 9.0e-143 511.1 486 55.1
FvH4_5g33860 Fragaria vesca HOM05D005719 ORTHO05D007030 9.0e-143 511.1 498 55.4
CSS0009932 Camellia sinensis var. sinensis HOM05D005719 ORTHO05D007030 3.4e-142 509.2 494 54.9
Glyma.06G092200 Glycine max HOM05D005719 ORTHO05D007030 4.5e-142 508.8 485 55.3
TAR628G1450 Trochodendron aralioides HOM05D005719 ORTHO05D007030 2.2e-141 506.5 489 56.4
Actinidia19605 Actinidia chinensis HOM05D005719 ORTHO05D007030 3.8e-141 505.8 490 55.1
Cfa013832 Carpinus fangiana HOM05D000446 ORTHO05D000321 8.5e-141 504.6 458 57.6
arahy.Tifrunner.gnm1.ann1.I1WLRD Arachis hypogaea HOM05D005719 ORTHO05D007030 2.5e-140 503.1 486 54.5
Hma1.2p1_0010F.1_g006360 Hydrangea macrophylla HOM05D005719 ORTHO05D007030 5.5e-140 501.9 487 56.5
Sc02g0008400 Simmondsia chinensis HOM05D005719 ORTHO05D007030 5.5e-140 501.9 492 54.5
COL.COLO4_35322 Corchorus olitorius HOM05D005719 ORTHO05D007030 1.2e-139 500.7 485 56.1
Eucgr.F02170 Eucalyptus grandis HOM05D005719 ORTHO05D007030 2.7e-139 499.6 489 56.2
PGR031G2819 Punica granatum HOM05D005719 ORTHO05D007030 3.6e-139 499.2 480 56.0
Psat5g018640 Pisum sativum HOM05D005719 ORTHO05D007030 7.9e-139 498.0 488 53.5
Duzib041G0544 Durio zibethinus HOM05D005719 ORTHO05D007030 3.0e-138 496.1 490 54.9
Lalb_Chr11g0064791 Lupinus albus HOM05D005719 ORTHO05D007030 8.8e-138 494.6 482 53.7
TPR.G12418 Trifolium pratense HOM05D005719 ORTHO05D007030 1.9e-137 493.4 486 53.3
CsaV3_3G048210 Cucumis sativus L. HOM05D005719 ORTHO05D007030 2.5e-137 493.0 485 53.6
TAR381G0820 Trochodendron aralioides HOM05D005719 ORTHO05D007030 3.3e-137 492.7 440 58.9
ClCG11G014800 Citrullus lanatus HOM05D005719 ORTHO05D007030 7.4e-137 491.5 486 53.9
Atru.chr13.942 Acer truncatum HOM05D005719 ORTHO05D007030 2.2e-136 490.0 491 55.6
Lsat_1_v5_gn_7_55820 Lactuca sativa HOM05D005719 ORTHO05D007030 2.2e-136 490.0 500 52.6
Phvul.009G145500 Phaseolus vulgaris HOM05D005719 ORTHO05D007030 2.2e-136 490.0 485 53.0
ECA240G4523 Erigeron canadensis HOM05D005719 ORTHO05D007030 6.3e-136 488.4 493 53.3
Medtr3g111330 Medicago truncatula HOM05D005719 ORTHO05D007030 6.9e-135 485.0 503 52.5
PSO700G0171 Papaver somniferum HOM05D005719 ORTHO05D007030 4.5e-134 482.3 483 54.2
FAN08G1402 Fragaria x ananassa HOM05D005719 ORTHO05D007030 7.7e-134 481.5 566 48.8
Cc10_g08220 Coffea canephora HOM05D005719 ORTHO05D007030 6.5e-133 478.4 494 53.4
Migut.C00296 Erythranthe guttata HOM05D005719 ORTHO05D007030 8.5e-133 478.0 492 51.2
Lj1g0010479 Lotus japonicus HOM05D005719 ORTHO05D007030 3.2e-132 476.1 483 52.2
Sed0009724 Sechium edule HOM05D005719 ORTHO05D007030 4.2e-132 475.7 464 54.5
EL10Ac1g02246 Beta vulgaris HOM05D005719 ORTHO05D007030 5.5e-132 475.3 491 51.9
Glyma.04G090400 Glycine max HOM05D005719 ORTHO05D007030 5.5e-132 475.3 485 53.0
PSO761G0268 Papaver somniferum HOM05D005719 ORTHO05D007030 5.5e-132 475.3 500 51.4
HanXRQChr03g0065451 Helianthus annuus HOM05D005719 ORTHO05D007030 3.6e-131 472.6 486 51.2
DCAR_014675 Daucus carota HOM05D005719 ORTHO05D007030 1.5e-129 467.2 479 51.8
Hund05222 Selenicereus undatus HOM05D005719 ORTHO05D007030 1.1e-127 461.1 493 51.9
FAN18G0583 Fragaria x ananassa HOM05D005719 ORTHO05D007030 7.7e-126 454.9 423 56.3
TPR.G21947 Trifolium pratense HOM05D005719 ORTHO05D007030 7.7e-126 454.9 458 53.1
MSTRG.25002 Avicennia marina HOM05D005719 ORTHO05D007030 1.0e-125 454.5 495 50.1
Oeu035376.1 Olea europaea HOM05D005719 ORTHO05D007030 1.4e-124 450.7 486 49.6
VMungo1309G0989 Vigna mungo HOM05D005719 ORTHO05D007030 1.9e-124 450.3 458 52.2
Nitab4.5_0001608g0030 Nicotiana tabacum HOM05D005719 ORTHO05D007030 1.2e-123 447.6 494 51.0
Sopen02g003330 Solanum pennellii HOM05D005719 ORTHO05D007030 3.6e-123 446.0 493 48.1
Solyc02g014380.3 Solanum lycopersicum HOM05D005719 ORTHO05D007030 8.0e-123 444.9 493 48.1
MBI16_g44752_MAGBIO Magnolia biondii HOM05D005719 ORTHO05D007030 4.8e-120 435.6 406 54.9
Manes.05G187400 Manihot esculenta HOM05D005719 ORTHO05D007030 5.9e-118 428.7 391 57.5
Nn1g05685 Nelumbo nucifera HOM05D005719 ORTHO05D007030 2.1e-115 420.2 489 49.9
Dinv44886 Davidia involucrata HOM05D005719 ORTHO05D007030 1.0e-114 417.9 393 57.3
Rhsim07G0214600 Rhododendron simsii HOM05D005719 ORTHO05D007030 7.5e-113 411.8 329 63.8
SGA_v2.0_scaffold14G07072 Striga asiatica HOM05D005719 ORTHO05D007030 2.8e-112 409.8 521 45.1
Ca_15541_v3 Cicer arietinum L. HOM05D005719 ORTHO05D007030 8.2e-112 408.3 485 47.4
unitig_749.g13864 Utricularia gibba HOM05D005719 ORTHO05D000442 1.2e-110 404.4 496 45.8
AUR62035419 Chenopodium quinoa HOM05D005719 ORTHO05D007030 3.5e-110 402.9 548 43.8
CAN.G1751.8 Capsicum annuum HOM05D005719 ORTHO05D007030 4.5e-110 402.5 425 50.6
HPP92_028121 Vanilla planifolia HOM05D005719 ORTHO05D007030 2.9e-109 399.8 483 44.3
HPP92_020868 Vanilla planifolia HOM05D005719 ORTHO05D007030 1.9e-108 397.1 483 44.1
Nitab4.5_0000681g0030 Nicotiana tabacum HOM05D005719 ORTHO05D007030 2.7e-107 393.3 492 49.6
MELO3C003498.2 Cucumis melo HOM05D005719 ORTHO05D007030 3.6e-107 392.9 357 56.6
Peaxi162Scf01397g00011 Petunia axillaris HOM05D005719 ORTHO05D007030 1.3e-101 374.4 357 55.5
CAN.G1921.11 Capsicum annuum HOM05D005719 ORTHO05D007030 3.8e-101 372.9 494 43.9
BcaB04g19478 Brassica carinata HOM05D005719 ORTHO05D007030 5.0e-101 372.5 276 74.3
PGSC0003DMG400019103 Solanum tuberosum HOM05D005719 ORTHO05D007030 2.0e-97 360.5 492 43.5
Os08g0101400 Oryza sativa ssp. japonica HOM05D005719 ORTHO05D007030 5.4e-95 352.4 479 41.3
CDE07G0720 Ceratophyllum demersum HOM05D005719 ORTHO05D007030 5.0e-93 345.9 482 42.7
SalBow7G1913 Salvia bowleyana HOM05D005719 ORTHO05D007030 1.1e-92 344.7 395 48.1
Ah.00g000110 Amaranthus hybridus HOM05D005719 ORTHO05D007030 5.8e-89 332.4 403 46.4
Potri.002G108700 Populus trichocarpa HOM05D005719 ORTHO05D007030 5.4e-87 325.9 250 66.0
Actinidia29649 Actinidia chinensis HOM05D005719 ORTHO05D007030 3.3e-76 290.0 350 48.6
PGSC0003DMG400019007 Solanum tuberosum HOM05D005719 ORTHO05D007030 4.1e-71 273.1 495 37.2
Pp3c26_6510 Physcomitrium patens HOM05D005719 ORTHO05D007030 3.0e-69 266.9 501 36.1
Mapoly0053s0027 Marchantia polymorpha HOM05D005719 ORTHO05D007030 1.6e-67 261.2 468 36.5
Os10g0188900 Oryza sativa ssp. japonica HOM05D005719 ORTHO05D007030 1.0e-61 241.9 273 47.6
TAR381G1016 Trochodendron aralioides HOM05D005719 ORTHO05D007030 1.1e-60 238.4 185 65.9
SMO118G0237 Selaginella moellendorffii HOM05D005719 ORTHO05D007030 1.9e-52 211.1 401 36.7
Zm00001eb198670 Zea mays HOM05D005719 ORTHO05D007030 2.5e-52 210.7 270 43.7
Lju279A4T8 Lonicera japonica HOM05D005719 ORTHO05D007030 2.1e-51 207.6 174 58.0
AUR62035705 Chenopodium quinoa HOM05D005719 ORTHO05D007030 1.8e-50 204.5 284 41.5
HanXRQChr16g0499811 Helianthus annuus HOM05D005719 ORTHO05D007030 3.8e-48 196.8 339 38.9
TAR381G0292 Trochodendron aralioides HOM05D005719 ORTHO05D007030 1.2e-46 191.8 237 47.7
AUR62035707 Chenopodium quinoa HOM05D005719 ORTHO05D007030 5.1e-45 186.4 142 68.3
Duzib116G0315 Durio zibethinus HOM05D005719 ORTHO05D007030 2.8e-43 180.6 135 67.4
ATR0144G003 Amborella trichopoda HOM05D005719 ORTHO05D007030 3.9e-37 160.2 242 43.4
AagrBONN_evm.TU.Sc2ySwM_369.438 Anthoceros agrestis HOM05D005719 ORTHO05D007030 1.1e-34 152.1 362 30.9
Lju170A15T23 Lonicera japonica HOM05D005719 ORTHO05D007030 1.4e-34 151.8 108 65.7
CBR_g38241 Chara braunii HOM05D005719 ORTHO05D007030 1.8e-34 151.4 421 28.7
ATR0800G070 Amborella trichopoda HOM05D005719 ORTHO05D007030 9.0e-34 149.1 130 57.7
SEGI_36882 Sequoiadendron giganteum HOM05D005719 ORTHO05D007030 1.1e-28 132.1 140 54.3
Hund16029 Selenicereus undatus HOM05D005719 ORTHO05D007030 6.3e-27 126.3 234 35.0
COL.COLO4_23153 Corchorus olitorius HOM05D005719 ORTHO05D007030 2.4e-26 124.4 164 49.4
Lju170A15T24 Lonicera japonica HOM05D005719 ORTHO05D007030 5.3e-26 123.2 109 63.3
Oeu035375.1 Olea europaea HOM05D005719 ORTHO05D007030 1.3e-19 102.1 170 38.2
C05p32060 Brassica napus HOM05D005719 ORTHO05D007030 3.1e-18 97.4 87 69.0
BolC5t31933H Brassica oleracea HOM05D005719 ORTHO05D007030 3.1e-18 97.4 87 69.0
Lju279C4T1 Lonicera japonica HOM05D005719 ORTHO05D007030 3.0e-13 80.9 109 50.5
Peaxi162Scf01397g00010 Petunia axillaris HOM05D005719 ORTHO05D007030 3.0e-13 80.9 130 40.0
Cre12.g551000 Chlamydomonas reinhardtii HOM05D005719 ORTHO05D007030 3.9e-13 80.5 435 23.0
SEGI_23985 Sequoiadendron giganteum HOM05D005719 ORTHO05D007030 5.7e-12 76.6 106 35.8


User provided reference genes

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