Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g17220 Schrenkiella parvula HOM05D009946 ORTHO05D004401 3.3e-37 157.9 82 100.0
AT3G28455 Arabidopsis thaliana HOM05D009946 ORTHO05D004401 4.4e-34 147.5 82 91.5
AL5G18080 Arabidopsis lyrata HOM05D009946 ORTHO05D004401 2.9e-33 144.8 82 90.2
Carub.0005s0698 Capsella rubella HOM05D009946 ORTHO05D004401 8.4e-33 143.3 82 91.5
Thhalv10005220m.g Eutrema salsugineum HOM05D009946 ORTHO05D004401 2.7e-31 138.3 82 89.0
C09p03880 Brassica napus HOM05D009946 ORTHO05D004401 3.0e-30 134.8 82 87.8
CARHR292510 Cardamine hirsuta HOM05D009946 ORTHO05D004401 3.0e-30 134.8 82 84.1
A09p03680 Brassica napus HOM05D009946 ORTHO05D004401 1.1e-29 132.9 82 86.6
BolC9t53314H Brassica oleracea HOM05D009946 ORTHO05D004401 1.5e-29 132.5 82 86.6
BcaC03g17517 Brassica carinata HOM05D009946 ORTHO05D004401 2.8e-28 128.3 82 86.6
BolC2t11540H Brassica oleracea HOM05D009946 ORTHO05D004401 2.8e-28 128.3 82 86.6
C07p37510 Brassica napus HOM05D009946 ORTHO05D004401 7.6e-26 120.2 82 79.3
BolC7t44264H Brassica oleracea HOM05D009946 ORTHO05D004401 7.6e-26 120.2 82 79.3
BcaC04g23875 Brassica carinata HOM05D009946 ORTHO05D004401 1.3e-25 119.4 75 84.0
BcaB04g19463 Brassica carinata HOM05D009946 ORTHO05D004401 2.2e-25 118.6 70 88.6
C02p54790 Brassica napus HOM05D009946 ORTHO05D004401 2.4e-24 115.2 70 87.1
BraA09t36003Z Brassica rapa HOM05D009946 ORTHO05D004401 4.2e-24 114.4 82 75.6
A02p35950 Brassica napus HOM05D009946 ORTHO05D004401 2.7e-23 111.7 70 85.7
BraA02t08594Z Brassica rapa HOM05D009946 ORTHO05D004401 2.7e-23 111.7 70 85.7
A06p40520 Brassica napus HOM05D009946 ORTHO05D004401 7.9e-23 110.2 82 73.2
BraA06t26971Z Brassica rapa HOM05D009946 ORTHO05D004401 7.9e-23 110.2 82 73.2
BcaC06g33736 Brassica carinata HOM05D009946 ORTHO05D004401 4.0e-19 97.8 70 75.7
Aa31LG2G4620 Aethionema arabicum HOM05D009946 ORTHO05D004401 4.5e-18 94.4 81 64.2
Thhalv10028314m.g Eutrema salsugineum HOM05D009946 ORTHO05D004401 7.1e-16 87.0 75 65.3
Sp7g02070 Schrenkiella parvula HOM05D009946 ORTHO05D004401 3.3e-13 78.2 75 61.3
Cpa.g.sc14.63 Carica papaya HOM05D004965 ORTHO05D004401 4.8e-12 74.3 94 48.9
Manes.15G177900 Manihot esculenta HOM05D004965 ORTHO05D004401 4.8e-12 74.3 91 50.5
Potri.017G074600 Populus trichocarpa HOM05D004965 ORTHO05D004401 1.8e-11 72.4 91 48.4
Haze_14606 Corylus avellana HOM05D004965 ORTHO05D004401 3.1e-11 71.6 90 50.0
Thecc.04G069500 Theobroma cacao HOM05D004965 ORTHO05D004401 5.3e-11 70.9 91 46.2
Atru.chr8.2466 Acer truncatum HOM05D004965 ORTHO05D004401 5.8e-10 67.4 103 42.7
Lju41A28T116 Lonicera japonica HOM05D004965 ORTHO05D004401 5.0e-09 64.3 74 48.6
Gohir.A07G216700 Gossypium hirsutum HOM05D004965 ORTHO05D004401 6.5e-09 63.9 83 43.4
Dinv33690 Davidia involucrata HOM05D004965 ORTHO05D004401 8.4e-09 63.5 94 43.6
Actinidia06052 Actinidia chinensis HOM05D004965 ORTHO05D004401 1.4e-08 62.8 94 44.7
Ciclev10013642m.g Citrus clementina HOM05D004965 ORTHO05D004401 1.9e-08 62.4 88 45.5
MD09G1042500 Malus domestica HOM05D004965 ORTHO05D004401 1.9e-08 62.4 90 42.2
Prupe.3G275200 Prunus persica HOM05D004965 ORTHO05D004401 1.9e-08 62.4 86 44.2
QL02p079418 Quercus lobata HOM05D004965 ORTHO05D004401 1.9e-08 62.4 94 46.8
ClCG09G018520 Citrullus lanatus HOM05D006434 ORTHO05D008069 2.5e-08 62.0 81 40.7
Cfa007493 Carpinus fangiana HOM05D004965 ORTHO05D004401 3.2e-08 61.6 81 48.1
Gohir.D07G223500 Gossypium hirsutum HOM05D004965 ORTHO05D004401 4.2e-08 61.2 83 42.2
Gorai.001G257800 Gossypium raimondii HOM05D004965 ORTHO05D004401 4.2e-08 61.2 83 42.2
CANSAT64G1053 Cannabis sativa HOM05D004965 ORTHO05D004401 5.5e-08 60.8 104 39.4
COL.COLO4_36990 Corchorus olitorius HOM05D004965 ORTHO05D004401 7.1e-08 60.5 49 61.2
CsaV3_5G037710 Cucumis sativus L. HOM05D004965 ORTHO05D004401 9.3e-08 60.1 81 43.2
Thecc.02G237300 Theobroma cacao HOM05D004965 ORTHO05D004401 9.3e-08 60.1 92 40.2
Sed0027722 Sechium edule HOM05D004965 ORTHO05D004401 1.2e-07 59.7 81 39.5
CSS0043755 Camellia sinensis var. sinensis HOM05D004965 ORTHO05D004401 3.5e-07 58.2 89 40.4
Sabra17G0067000 Salix brachista HOM05D004965 ORTHO05D004401 4.6e-07 57.8 81 45.7
Dinv24933 Davidia involucrata HOM05D004965 ORTHO05D004401 7.9e-07 57.0 91 40.7
Cc07_g02840 Coffea canephora HOM05D004965 ORTHO05D004401 1.0e-06 56.6 92 40.2
MBI04_g09739_MAGBIO Magnolia biondii HOM05D004965 ORTHO05D004401 1.0e-06 56.6 106 37.7
TAR629G2889 Trochodendron aralioides HOM05D004965 ORTHO05D004401 1.0e-06 56.6 85 43.5
CiPaw.03G032200 Carya illinoinensis HOM05D004965 ORTHO05D004401 1.3e-06 56.2 90 43.3
Rhsim10G0029300 Rhododendron simsii HOM05D004965 ORTHO05D004401 1.3e-06 56.2 87 44.8
TWI36G1294 Tripterygium wilfordii HOM05D004965 ORTHO05D004401 1.3e-06 56.2 88 42.0
TAR369G0013 Trochodendron aralioides HOM05D004965 ORTHO05D004401 1.3e-06 56.2 85 45.9
vmacro05780 Vaccinium macrocarpon HOM05D004965 ORTHO05D004401 1.3e-06 56.2 82 47.6
CiPaw.04G021200 Carya illinoinensis HOM05D004965 ORTHO05D004401 2.3e-06 55.5 90 40.0
SalBow1G8504 Salvia bowleyana HOM05D004965 ORTHO05D004401 2.3e-06 55.5 52 55.8
Lj2g0009068 Lotus japonicus HOM05D004965 ORTHO05D004401 3.0e-06 55.1 94 44.7
Phvul.004G023800 Phaseolus vulgaris HOM05D004965 ORTHO05D004401 3.0e-06 55.1 94 40.4
RcHm_v2.0_Chr2g0169701 Rosa chinensis HOM05D004965 ORTHO05D004401 3.0e-06 55.1 86 41.9
Glyma.13G067000 Glycine max HOM05D004965 ORTHO05D004401 3.9e-06 54.7 84 41.7
DCAR_025362 Daucus carota HOM05D004965 ORTHO05D004401 5.1e-06 54.3 83 44.6
TAR374G1442 Trochodendron aralioides HOM05D004965 ORTHO05D004401 5.1e-06 54.3 91 39.6
MBI01_g13075_MAGBIO Magnolia biondii HOM05D004965 ORTHO05D004401 6.7e-06 53.9 93 36.6
FAN02G2636 Fragaria x ananassa HOM05D004965 ORTHO05D004401 8.7e-06 53.5 86 39.5
Manes.01G193600 Manihot esculenta HOM05D004965 ORTHO05D004401 8.7e-06 53.5 87 39.1


User provided reference genes

Program Settings