Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g16800 Schrenkiella parvula HOM05D004010 ORTHO05D004995 0.0e+00 3611.6 1847 100.0
A06p40990 Brassica napus HOM05D004010 ORTHO05D004995 0.0e+00 3227.6 1845 89.4
BraA06t27018Z Brassica rapa HOM05D004010 ORTHO05D004995 0.0e+00 3224.9 1845 89.4
BcaC06g33789 Brassica carinata HOM05D004010 ORTHO05D004995 0.0e+00 3220.6 1845 89.3
C07p36860 Brassica napus HOM05D004010 ORTHO05D004995 0.0e+00 3220.6 1845 89.3
BolC7t44198H Brassica oleracea HOM05D004010 ORTHO05D004995 0.0e+00 3220.6 1845 89.3
BcaC06g30965 Brassica carinata HOM05D004010 ORTHO05D004995 0.0e+00 3215.2 1845 89.3
AL5G17090 Arabidopsis lyrata HOM05D004010 ORTHO05D004995 0.0e+00 3158.6 1846 87.8
AT3G27670 Arabidopsis thaliana HOM05D004010 ORTHO05D004995 0.0e+00 3090.8 1848 86.0
Carub.0005s0611 Capsella rubella HOM05D004010 ORTHO05D004995 0.0e+00 3086.2 1848 85.6
Thhalv10003508m.g Eutrema salsugineum HOM05D004010 ORTHO05D004995 0.0e+00 2937.1 1688 89.3
Aa31LG2G5000 Aethionema arabicum HOM05D004010 ORTHO05D004995 0.0e+00 2831.2 1852 79.0
THA.LOC104825324 Tarenaya hassleriana HOM05D004010 ORTHO05D004995 0.0e+00 2491.1 1853 70.2
Thecc.04G015900 Theobroma cacao HOM05D004010 ORTHO05D004995 0.0e+00 1978.8 1857 56.1
Gorai.006G032700 Gossypium raimondii HOM05D004010 ORTHO05D004995 0.0e+00 1969.5 1859 55.7
QL02p075066 Quercus lobata HOM05D004010 ORTHO05D004995 0.0e+00 1956.8 1870 55.2
Prupe.3G290300 Prunus persica HOM05D004010 ORTHO05D004995 0.0e+00 1925.6 1862 54.7
Cfa007379 Carpinus fangiana HOM05D004010 ORTHO05D004995 0.0e+00 1921.4 1860 55.0
Manes.17G113000 Manihot esculenta HOM05D004010 ORTHO05D004995 0.0e+00 1912.5 1866 53.8
RcHm_v2.0_Chr2g0173001 Rosa chinensis HOM05D004010 ORTHO05D004995 0.0e+00 1912.5 1859 54.4
FvH4_6g51330 Fragaria vesca HOM05D004010 ORTHO05D004995 0.0e+00 1880.5 1858 54.0
MD09G1028200 Malus domestica HOM05D004010 ORTHO05D004995 0.0e+00 1877.8 1858 53.9
CiPaw.03G042500 Carya illinoinensis HOM05D004010 ORTHO05D004995 0.0e+00 1877.4 1862 53.8
Dinv33448 Davidia involucrata HOM05D004010 ORTHO05D004995 0.0e+00 1867.8 1864 53.8
Potri.001G346000 Populus trichocarpa HOM05D004010 ORTHO05D004995 0.0e+00 1864.4 1860 53.5
TWI36G0979 Tripterygium wilfordii HOM05D004010 ORTHO05D004995 0.0e+00 1859.0 1857 53.3
MD17G1029800 Malus domestica HOM05D004010 ORTHO05D004995 0.0e+00 1852.8 1859 53.2
CANSAT64G1980 Cannabis sativa HOM05D004010 ORTHO05D004995 0.0e+00 1842.4 1859 52.9
Haze_14730 Corylus avellana HOM05D004010 ORTHO05D004995 0.0e+00 1833.9 1943 51.9
Lalb_Chr24g0397171 Lupinus albus HOM05D004010 ORTHO05D004995 0.0e+00 1799.6 1860 51.0
Gohir.D09G028100 Gossypium hirsutum HOM05D004010 ORTHO05D004995 0.0e+00 1791.9 1706 55.0
Lj2g0015656 Lotus japonicus HOM05D004010 ORTHO05D004995 0.0e+00 1772.7 1860 50.9
FAN05G5546 Fragaria x ananassa HOM05D004010 ORTHO05D004995 0.0e+00 1768.8 1860 51.8
Eucgr.I01751 Eucalyptus grandis HOM05D004010 ORTHO05D004995 0.0e+00 1766.1 1868 51.6
FAN14G1482 Fragaria x ananassa HOM05D004010 ORTHO05D004995 0.0e+00 1757.7 1860 51.7
Medtr6g005010 Medicago truncatula HOM05D004010 ORTHO05D004995 0.0e+00 1748.0 1859 49.9
Glyma.19G004700 Glycine max HOM05D004010 ORTHO05D004995 0.0e+00 1747.3 1861 50.4
Ca_04154_v3 Cicer arietinum L. HOM05D004010 ORTHO05D004995 0.0e+00 1745.3 1857 49.6
TPR.G14085 Trifolium pratense HOM05D004010 ORTHO05D004995 0.0e+00 1738.4 1857 49.3
FAN09G4321 Fragaria x ananassa HOM05D004010 ORTHO05D004995 0.0e+00 1737.2 1861 51.3
Sabra16G0225000 Salix brachista HOM05D004010 ORTHO05D004995 0.0e+00 1732.2 2005 48.5
arahy.Tifrunner.gnm1.ann1.8M6LVM Arachis hypogaea HOM05D004010 ORTHO05D004995 0.0e+00 1728.4 1857 49.2
Sed0022234 Sechium edule HOM05D004010 ORTHO05D004995 0.0e+00 1723.8 1868 50.6
Sabra16G0225700 Salix brachista HOM05D004010 ORTHO05D004995 0.0e+00 1722.2 2046 47.8
VMungo0464G1595 Vigna mungo HOM05D004010 ORTHO05D004995 0.0e+00 1719.9 1873 49.4
Nn4g22648 Nelumbo nucifera HOM05D004010 ORTHO05D004995 0.0e+00 1707.2 1857 50.0
arahy.Tifrunner.gnm1.ann1.TK4K1F Arachis hypogaea HOM05D004010 ORTHO05D004995 0.0e+00 1695.6 1891 48.1
Rhsim10G0018100 Rhododendron simsii HOM05D004010 ORTHO05D004995 0.0e+00 1694.5 1987 48.4
PGR142G3424 Punica granatum HOM05D004010 ORTHO05D004995 0.0e+00 1693.7 1862 49.6
vmacro05856 Vaccinium macrocarpon HOM05D004010 ORTHO05D004995 0.0e+00 1689.1 1967 48.3
Phvul.004G009818 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 0.0e+00 1683.3 1860 48.9
CsaV3_3G042730 Cucumis sativus L. HOM05D004010 ORTHO05D004995 0.0e+00 1681.4 1862 49.0
Solyc02g086500.3 Solanum lycopersicum HOM05D004010 ORTHO05D004995 0.0e+00 1666.4 1856 49.0
Sopen02g031220 Solanum pennellii HOM05D004010 ORTHO05D004995 0.0e+00 1656.7 1856 48.7
MELO3C009985.2 Cucumis melo HOM05D004010 ORTHO05D004995 0.0e+00 1649.4 1867 48.3
ClCG10G013960 Citrullus lanatus HOM05D004010 ORTHO05D004995 0.0e+00 1645.6 1868 48.8
TAR371G0622 Trochodendron aralioides HOM05D004010 ORTHO05D004995 0.0e+00 1642.1 1695 52.3
Aqoxy3G01154 Aquilegia oxysepala HOM05D004010 ORTHO05D004995 0.0e+00 1641.3 1861 47.9
HanXRQChr09g0255111 Helianthus annuus HOM05D004010 ORTHO05D004995 0.0e+00 1612.8 1868 48.3
PSO478G2834 Papaver somniferum HOM05D004010 ORTHO05D004995 0.0e+00 1609.0 1877 47.6
PSO017G0470 Papaver somniferum HOM05D004010 ORTHO05D004995 0.0e+00 1595.1 1880 46.9
Migut.H00083 Erythranthe guttata HOM05D004010 ORTHO05D004995 0.0e+00 1582.4 1884 46.8
Lsat_1_v5_gn_4_183480 Lactuca sativa HOM05D004010 ORTHO05D004995 0.0e+00 1582.0 1873 47.3
Psat1g055320 Pisum sativum HOM05D004010 ORTHO05D004995 0.0e+00 1569.3 1726 48.4
ECA232G4079 Erigeron canadensis HOM05D004010 ORTHO05D004995 0.0e+00 1563.5 1856 46.9
Duzib187G0443 Durio zibethinus HOM05D004010 ORTHO05D004995 0.0e+00 1562.4 1857 47.8
CARHR149120 Cardamine hirsuta HOM05D004010 ORTHO05D004995 0.0e+00 1546.6 936 85.4
Ciclev10014033m.g Citrus clementina HOM05D004010 ORTHO05D004995 0.0e+00 1535.0 1519 53.5
DCAR_001437 Daucus carota HOM05D004010 ORTHO05D004995 0.0e+00 1534.2 1871 46.2
GSVIVG01032418001 Vitis vinifera HOM05D004010 ORTHO05D004995 0.0e+00 1501.5 1860 46.8
SalBow6G2090 Salvia bowleyana HOM05D004010 ORTHO05D004995 0.0e+00 1473.8 1972 43.6
CSS0029677 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 0.0e+00 1469.9 1513 51.9
Sc03g0007550 Simmondsia chinensis HOM05D004010 ORTHO05D004995 0.0e+00 1452.2 1650 48.5
Nitab4.5_0006802g0030 Nicotiana tabacum HOM05D004010 ORTHO05D004995 0.0e+00 1440.2 1888 44.1
SGA_v2.0_scaffold135G34899 Striga asiatica HOM05D004010 ORTHO05D004995 0.0e+00 1437.2 1924 43.1
EL10Ac4g08587 Beta vulgaris HOM05D004010 ORTHO05D004995 0.0e+00 1432.5 1861 44.1
CSS0006564 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 0.0e+00 1422.9 1449 52.1
AUR62043055 Chenopodium quinoa HOM05D004010 ORTHO05D004995 0.0e+00 1407.9 1860 43.0
Peaxi162Scf00129g01535 Petunia axillaris HOM05D004010 ORTHO05D004995 0.0e+00 1351.3 1899 42.7
ATR1158G023 Amborella trichopoda HOM05D004010 ORTHO05D004995 0.0e+00 1301.2 1877 41.7
CAN.G473.4 Capsicum annuum HOM05D004010 ORTHO05D004995 0.0e+00 1264.6 1363 49.2
AUR62034752 Chenopodium quinoa HOM05D004010 ORTHO05D004995 0.0e+00 1217.2 2065 37.3
Cc07_g01800 Coffea canephora HOM05D004010 ORTHO05D004995 0.0e+00 1207.2 1351 48.0
Nitab4.5_0002682g0110 Nicotiana tabacum HOM05D004010 ORTHO05D004995 0.0e+00 1192.9 1896 38.7
PGSC0003DMG400012627 Solanum tuberosum HOM05D004010 ORTHO05D004995 0.0e+00 1153.7 1222 49.3
Oeu006813.1 Olea europaea HOM05D004010 ORTHO05D004995 0.0e+00 1134.4 1303 48.7
Os01g0169500 Oryza sativa ssp. japonica HOM05D004010 ORTHO05D004995 0.0e+00 1128.6 1856 37.4
MBI10_g32033_MAGBIO Magnolia biondii HOM05D004010 ORTHO05D004995 0.0e+00 1128.2 1382 46.3
Actinidia36110 Actinidia chinensis HOM05D004010 ORTHO05D004995 0.0e+00 1097.0 1180 51.4
Zm00001eb123050 Zea mays HOM05D004010 ORTHO05D004995 0.0e+00 1090.9 1874 37.9
COL.COLO4_29097 Corchorus olitorius HOM05D004010 ORTHO05D004995 2.4e-300 1036.6 970 56.3
Hund06718 Selenicereus undatus HOM05D004010 ORTHO05D004995 6.1e-232 809.3 1036 44.0
Cpa.g.sc108.59 Carica papaya HOM05D004010 ORTHO05D004995 5.0e-226 789.6 724 58.0
Lju41A39T81 Lonicera japonica HOM05D004010 ORTHO05D004995 4.9e-221 773.1 831 49.3
Mapoly0001s0420 Marchantia polymorpha HOM05D004010 ORTHO05D004995 4.9e-221 773.1 1952 31.1
Atru.chr6.2370 Acer truncatum HOM05D004010 ORTHO05D004995 7.0e-220 769.2 644 60.1
Lju41A39G70 Lonicera japonica HOM05D004010 ORTHO05D004995 7.3e-201 706.1 935 45.1
Hund06717 Selenicereus undatus HOM05D004010 ORTHO05D004995 9.0e-175 619.4 845 42.5
Actinidia36109 Actinidia chinensis HOM05D004010 ORTHO05D004995 4.6e-171 607.1 642 50.2
SMO361G0448 Selaginella moellendorffii HOM05D004010 ORTHO05D004995 3.0e-170 604.4 1838 28.3
Cpa.g.sc108.58 Carica papaya HOM05D004010 ORTHO05D004995 9.0e-167 592.8 1152 35.2
Phvul.004G009761 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 6.3e-160 570.1 613 48.9
FAN05G3555 Fragaria x ananassa HOM05D004010 ORTHO05D004995 3.2e-156 557.8 589 51.6
CDE05G1248 Ceratophyllum demersum HOM05D004010 ORTHO05D004995 3.7e-152 544.3 784 41.1
vmacro05456 Vaccinium macrocarpon HOM05D004010 ORTHO05D004995 9.1e-151 539.7 827 40.0
COL.COLO4_29096 Corchorus olitorius HOM05D004010 ORTHO05D004995 7.7e-150 536.6 528 54.9
Phvul.004G009161 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 4.5e-142 510.8 668 41.8
Phvul.004G009536 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 6.3e-136 490.3 526 48.5
Sopen00g011090 Solanum pennellii HOM05D004010 ORTHO05D004995 7.7e-118 430.3 418 53.1
Gohir.A09G028500 Gossypium hirsutum HOM05D004010 ORTHO05D004995 2.9e-109 401.7 455 49.2
CDE05G2835 Ceratophyllum demersum HOM05D004010 ORTHO05D004995 1.9e-108 399.1 632 37.7
Phvul.004G009118 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 6.8e-106 390.6 368 54.3
Ciclev10017517m.g Citrus clementina HOM05D004010 ORTHO05D004995 4.9e-104 384.4 346 57.8
Cc07_g01810 Coffea canephora HOM05D004010 ORTHO05D004995 2.1e-99 369.0 426 45.8
Phvul.007G113156 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 3.6e-99 368.2 341 55.4
Prupe.3G290500 Prunus persica HOM05D004010 ORTHO05D004995 2.3e-93 349.0 433 46.7
Phvul.004G009109 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 1.4e-90 339.7 437 41.6
Oeu006812.1 Olea europaea HOM05D004010 ORTHO05D004995 3.9e-85 321.6 431 44.1
Hma1.2p1_1291F.1_g273520 Hydrangea macrophylla HOM05D004010 ORTHO05D004995 1.7e-80 306.2 401 46.1
CDE05G1902 Ceratophyllum demersum HOM05D004010 ORTHO05D004995 2.2e-80 305.8 336 48.5
CSS0026540 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 1.3e-77 296.6 343 45.2
SEGI_19034 Sequoiadendron giganteum HOM05D004010 ORTHO05D004995 5.2e-74 284.6 618 31.7
Atru.chr6.2368 Acer truncatum HOM05D004010 ORTHO05D004995 6.6e-69 267.7 215 61.9
SEGI_20333 Sequoiadendron giganteum HOM05D004010 ORTHO05D004995 9.6e-68 263.8 444 36.3
vmacro05455 Vaccinium macrocarpon HOM05D004010 ORTHO05D004995 3.8e-64 251.9 546 32.4
Atru.chr6.2275 Acer truncatum HOM05D004010 ORTHO05D004995 7.1e-63 247.7 194 63.4
Psat2g096200 Pisum sativum HOM05D004010 ORTHO05D004995 2.7e-62 245.7 266 45.9
unitig_0.g541 Utricularia gibba HOM05D004010 ORTHO05D004995 1.0e-61 243.8 335 39.7
Sopen00g012710 Solanum pennellii HOM05D004010 ORTHO05D004995 2.6e-57 229.2 274 44.9
CSS0021155 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 9.9e-57 227.3 226 54.0
BcaB05g24178 Brassica carinata HOM05D004010 ORTHO05D027244 4.9e-56 224.9 183 65.0
Actinidia15573 Actinidia chinensis HOM05D004010 ORTHO05D004995 2.1e-54 219.5 249 46.2
MBI10_g46391_MAGBIO Magnolia biondii HOM05D004010 ORTHO05D004995 3.2e-47 195.7 282 42.9
CBR_g19445 Chara braunii HOM05D004010 ORTHO05D004995 2.7e-46 192.6 949 23.9
Phvul.004G009701 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 3.4e-41 175.6 201 44.8
MBI10_g38112_MAGBIO Magnolia biondii HOM05D004010 ORTHO05D004995 1.3e-40 173.7 266 41.4
MBI10_g39276_MAGBIO Magnolia biondii HOM05D004010 ORTHO05D004995 2.9e-40 172.6 228 44.7
CBR_g19447 Chara braunii HOM05D004010 ORTHO05D004995 2.5e-39 169.5 922 24.8
FAN05G1652 Fragaria x ananassa HOM05D004010 ORTHO05D004995 2.5e-39 169.5 205 46.8
Actinidia15574 Actinidia chinensis HOM05D004010 ORTHO05D004995 3.2e-39 169.1 199 47.2
FvH4_6g51551 Fragaria vesca HOM05D004010 ORTHO05D004995 3.0e-37 162.5 132 57.6
Atru.chr6.2371 Acer truncatum HOM05D004010 ORTHO05D004995 2.0e-36 159.8 150 53.3
CAN.G473.5 Capsicum annuum HOM05D004010 ORTHO05D004995 2.5e-36 159.5 132 62.1
Atru.chr6.2281 Acer truncatum HOM05D004010 ORTHO05D004995 7.4e-36 157.9 142 54.9
RcHm_v2.0_Chr5g0081041 Rosa chinensis HOM05D004010 ORTHO05D004995 1.3e-32 147.1 178 44.4
FAN14G2166 Fragaria x ananassa HOM05D004010 ORTHO05D004995 3.8e-32 145.6 126 58.7
Atru.chr6.2279 Acer truncatum HOM05D004010 ORTHO05D004995 6.5e-32 144.8 147 54.4
Phvul.004G009127 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 1.1e-31 144.1 134 59.0
FAN02G4182 Fragaria x ananassa HOM05D004010 ORTHO05D004995 6.7e-29 134.8 175 44.6
FvH4_6g51542 Fragaria vesca HOM05D004010 ORTHO05D004995 8.8e-29 134.4 174 43.1
FAN14G1049 Fragaria x ananassa HOM05D004010 ORTHO05D004995 3.3e-28 132.5 226 39.8
Ah.06g187170 Amaranthus hybridus HOM05D004010 ORTHO05D004995 2.2e-27 129.8 137 50.4
HPP92_004912 Vanilla planifolia HOM05D004010 ORTHO05D004995 1.4e-26 127.1 155 43.2
Phvul.007G112678 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 9.1e-26 124.4 146 47.3
FvH4_6g51560 Fragaria vesca HOM05D004010 ORTHO05D004995 2.0e-25 123.2 122 46.7
C05p30190 Brassica napus HOM05D015522 ORTHO05D027244 6.1e-22 111.7 108 62.0
BcaB07g33347 Brassica carinata HOM05D004010 ORTHO05D004995 8.0e-22 111.3 63 85.7
FvH4_5g31861 Fragaria vesca HOM05D004010 ORTHO05D046033 1.8e-21 110.2 90 57.8
C05p30200 Brassica napus HOM05D015522 ORTHO05D027244 2.3e-21 109.8 106 62.3
BcaC02g11087 Brassica carinata HOM05D004010 ORTHO05D006095 3.9e-21 109.0 165 43.6
SEGI_32252 Sequoiadendron giganteum HOM05D004010 ORTHO05D004995 5.7e-20 105.1 75 62.7
Phvul.004G008861 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 2.6e-17 96.3 105 46.7
Atru.chr6.2280 Acer truncatum HOM05D004010 ORTHO05D004995 8.5e-16 91.3 101 47.5
BolC5t31758H Brassica oleracea HOM05D015522 ORTHO05D031943 2.5e-15 89.7 93 61.3
FvH4_6g51540 Fragaria vesca HOM05D004010 ORTHO05D004995 5.5e-15 88.6 93 45.2
C09p45130 Brassica napus HOM05D015522 ORTHO05D031943 7.2e-15 88.2 117 50.4
BcaC04g20309 Brassica carinata HOM05D015522 ORTHO05D031943 1.4e-13 84.0 93 58.1
RcHm_v2.0_Chr4g0387881 Rosa chinensis HOM05D004010 ORTHO05D343204 8.3e-11 74.7 121 33.9
TPR.G14087 Trifolium pratense HOM05D004010 ORTHO05D004995 1.4e-10 73.9 52 67.3
HPP92_004913 Vanilla planifolia HOM05D004010 ORTHO05D004995 1.4e-10 73.9 80 51.2
Atru.chr6.2369 Acer truncatum HOM05D004010 ORTHO05D004995 1.8e-10 73.6 127 37.8
Phvul.004G009000 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 3.1e-10 72.8 135 33.3
FvH4_6g51541 Fragaria vesca HOM05D004010 ORTHO05D004995 1.6e-09 70.5 53 67.9
RcHm_v2.0_Chr3g0488481 Rosa chinensis HOM05D004010 ORTHO05D004995 1.7e-08 67.0 124 33.1
RcHm_v2.0_Chr4g0403131 Rosa chinensis HOM05D003776 ORTHO05D004459 5.0e-08 65.5 49 57.1
RcHm_v2.0_Chr4g0403161 Rosa chinensis HOM05D003776 ORTHO05D004459 5.0e-08 65.5 49 57.1
Hma1.2p1_1397F.1_g280710 Hydrangea macrophylla HOM05D004010 ORTHO05D036419 2.1e-06 60.1 61 45.9
Hma1.2p1_2269F.1_g318480 Hydrangea macrophylla HOM05D004010 ORTHO05D036419 3.6e-06 59.3 61 45.9


User provided reference genes

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