Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g16690 Schrenkiella parvula HOM05D005478 ORTHO05D006426 3.1e-102 375.2 195 100.0
Thhalv10004961m.g Eutrema salsugineum HOM05D005478 ORTHO05D006426 4.9e-71 271.6 198 75.3
Carub.0005s0595 Capsella rubella HOM05D005478 ORTHO05D006426 4.5e-69 265.0 200 72.0
AL5G16940 Arabidopsis lyrata HOM05D005478 ORTHO05D006426 7.8e-69 264.2 201 71.6
AT3G27520 Arabidopsis thaliana HOM05D005478 ORTHO05D006426 1.5e-67 260.0 197 69.5
BolC7t44179H Brassica oleracea HOM05D005478 ORTHO05D006426 8.9e-65 250.8 194 71.6
C07p36630 Brassica napus HOM05D005478 ORTHO05D006426 1.2e-64 250.4 181 76.2
BcaC06g30982 Brassica carinata HOM05D005478 ORTHO05D006426 4.4e-64 248.4 185 73.0
Aa31LG2G5140 Aethionema arabicum HOM05D005478 ORTHO05D006426 7.5e-64 247.7 207 66.2
A06p41110 Brassica napus HOM05D005478 ORTHO05D006426 2.2e-63 246.1 183 73.8
BraA06t27034Z Brassica rapa HOM05D005478 ORTHO05D006426 2.2e-63 246.1 183 73.8
BcaB04g19441 Brassica carinata HOM05D005478 ORTHO05D006426 4.1e-62 241.9 186 73.7
BcaC06g33809 Brassica carinata HOM05D005478 ORTHO05D006426 7.0e-62 241.1 181 74.0
A09p03440 Brassica napus HOM05D005478 ORTHO05D006426 8.6e-60 234.2 182 70.9
BraA09t35982Z Brassica rapa HOM05D005478 ORTHO05D006426 2.5e-59 232.6 182 70.3
CARHR148890 Cardamine hirsuta HOM05D005478 ORTHO05D006426 1.4e-57 226.9 194 64.4
BcaC04g23900 Brassica carinata HOM05D005478 ORTHO05D006426 2.3e-52 209.5 181 65.7
C09p03650 Brassica napus HOM05D005478 ORTHO05D006426 2.3e-52 209.5 181 65.7
BolC9t53284H Brassica oleracea HOM05D005478 ORTHO05D006426 5.0e-52 208.4 181 65.7
THA.LOC104825319 Tarenaya hassleriana HOM05D005478 ORTHO05D006426 4.7e-50 201.8 180 61.1
Thhalv10027961m.g Eutrema salsugineum HOM05D005478 ORTHO05D006426 1.1e-46 190.7 180 57.8
COL.COLO4_30424 Corchorus olitorius HOM05D005478 ORTHO05D006426 2.0e-40 169.9 197 49.7
Cpa.g.sc108.77 Carica papaya HOM05D005478 ORTHO05D006426 2.4e-38 162.9 198 49.5
CiPaw.04G029700 Carya illinoinensis HOM05D005478 ORTHO05D006426 2.4e-38 162.9 189 50.8
QL02p074001 Quercus lobata HOM05D005478 ORTHO05D006426 4.1e-38 162.2 189 49.2
Duzib160G0719 Durio zibethinus HOM05D005478 ORTHO05D006426 7.1e-38 161.4 191 47.1
Duzib235G1061 Durio zibethinus HOM05D005478 ORTHO05D006426 1.2e-37 160.6 193 48.2
TWI56G0849 Tripterygium wilfordii HOM05D005478 ORTHO05D006426 3.5e-37 159.1 189 50.3
TWI36G1604 Tripterygium wilfordii HOM05D005478 ORTHO05D006426 1.3e-36 157.1 192 47.9
Hma1.2p1_0818F.1_g223270 Hydrangea macrophylla HOM05D005478 ORTHO05D006426 3.0e-36 156.0 181 50.8
GSVIVG01032384001 Vitis vinifera HOM05D005478 ORTHO05D006426 6.6e-36 154.8 183 51.9
Prupe.3G293900 Prunus persica HOM05D005478 ORTHO05D006426 1.1e-35 154.1 199 48.2
TWI12G0237 Tripterygium wilfordii HOM05D005478 ORTHO05D006426 1.1e-35 154.1 192 49.5
Lalb_Chr22g0360721 Lupinus albus HOM05D005478 ORTHO05D006426 7.3e-35 151.4 193 52.3
VMungo0464G1533 Vigna mungo HOM05D005478 ORTHO05D006426 1.8e-33 146.7 180 47.8
CiPaw.03G045600 Carya illinoinensis HOM05D005478 ORTHO05D006426 3.1e-33 146.0 188 47.3
Ciclev10016916m.g Citrus clementina HOM05D005478 ORTHO05D006426 6.9e-33 144.8 195 46.7
Cfa007338 Carpinus fangiana HOM05D005478 ORTHO05D006426 2.0e-32 143.3 199 44.2
Thecc.06G091700 Theobroma cacao HOM05D005478 ORTHO05D006426 2.0e-32 143.3 197 42.1
ClCG10G013780 Citrullus lanatus HOM05D005478 ORTHO05D006426 5.8e-32 141.7 204 42.6
Actinidia36124 Actinidia chinensis HOM05D005478 ORTHO05D006426 1.7e-31 140.2 186 48.4
Haze_14759 Corylus avellana HOM05D005478 ORTHO05D006426 2.2e-31 139.8 197 44.2
Medtr6g004420 Medicago truncatula HOM05D005478 ORTHO05D006426 2.9e-31 139.4 180 47.8
Manes.17G111100 Manihot esculenta HOM05D005478 ORTHO05D006426 3.8e-31 139.0 196 46.9
MELO3C026588.2 Cucumis melo HOM05D005478 ORTHO05D006426 1.1e-30 137.5 202 39.6
Gohir.A09G082300 Gossypium hirsutum HOM05D005478 ORTHO05D006426 1.1e-30 137.5 191 42.4
CsaV3_3G042880 Cucumis sativus L. HOM05D005478 ORTHO05D006426 1.4e-30 137.1 202 40.6
PGR142G0633 Punica granatum HOM05D005478 ORTHO05D006426 1.4e-30 137.1 189 43.9
Duzib192G0894 Durio zibethinus HOM05D005478 ORTHO05D006426 1.9e-30 136.7 193 43.5
THA.LOC104825211 Tarenaya hassleriana HOM05D005478 ORTHO05D006426 2.4e-30 136.3 151 53.0
Actinidia18441 Actinidia chinensis HOM05D005478 ORTHO05D006426 9.3e-30 134.4 187 48.1
MSTRG.15534 Avicennia marina HOM05D005478 ORTHO05D006426 1.2e-29 134.0 177 46.3
Gohir.D09G082100 Gossypium hirsutum HOM05D005478 ORTHO05D006426 1.2e-29 134.0 191 42.4
Gorai.006G097900 Gossypium raimondii HOM05D005478 ORTHO05D006426 1.2e-29 134.0 188 42.6
CANSAT64G0255 Cannabis sativa HOM05D005478 ORTHO05D006426 1.6e-29 133.7 193 45.1
Lsat_1_v5_gn_0_18280 Lactuca sativa HOM05D005478 ORTHO05D006426 2.7e-29 132.9 181 49.2
Sabra16G0222600 Salix brachista HOM05D005478 ORTHO05D006426 3.5e-29 132.5 182 47.8
Sed0022021 Sechium edule HOM05D005478 ORTHO05D006426 3.5e-29 132.5 195 42.1
Ca_04142_v3 Cicer arietinum L. HOM05D005478 ORTHO05D006426 7.8e-29 131.3 180 43.9
Oeu033728.1 Olea europaea HOM05D005478 ORTHO05D006426 7.8e-29 131.3 189 45.5
Potri.001G343200 Populus trichocarpa HOM05D005478 ORTHO05D006426 3.0e-28 129.4 183 45.9
TPR.G31952 Trifolium pratense HOM05D005478 ORTHO05D006426 3.0e-28 129.4 180 45.0
Sc07g0003180 Simmondsia chinensis HOM05D005478 ORTHO05D006426 5.1e-28 128.6 191 44.0
MD09G1022900 Malus domestica HOM05D005478 ORTHO05D006426 8.7e-28 127.9 196 40.8
Rhsim10G0014600 Rhododendron simsii HOM05D005478 ORTHO05D006426 1.5e-27 127.1 187 46.0
Hund15527 Selenicereus undatus HOM05D005478 ORTHO05D006426 1.9e-27 126.7 190 45.3
DCAR_011260 Daucus carota HOM05D005478 ORTHO05D006426 2.5e-27 126.3 182 44.5
Glyma.05G002400 Glycine max HOM05D005478 ORTHO05D006426 2.5e-27 126.3 177 45.2
SGA_v2.0_scaffold47G17517 Striga asiatica HOM05D005478 ORTHO05D006426 4.3e-27 125.6 179 44.1
Migut.K01412 Erythranthe guttata HOM05D005478 ORTHO05D006426 7.3e-27 124.8 178 44.4
MSTRG.3284 Avicennia marina HOM05D005478 ORTHO05D006426 3.6e-26 122.5 188 43.6
unitig_88.g27693 Utricularia gibba HOM05D000631 ORTHO05D000524 4.8e-26 122.1 189 40.7
Atru.chr6.2431 Acer truncatum HOM05D005478 ORTHO05D006426 8.1e-26 121.3 180 43.3
AUR62041940 Chenopodium quinoa HOM05D005478 ORTHO05D006426 1.1e-25 120.9 201 40.8
TAR371G0105 Trochodendron aralioides HOM05D005478 ORTHO05D006426 1.1e-25 120.9 183 41.5
FAN02G1690 Fragaria x ananassa HOM05D005478 ORTHO05D006426 4.0e-25 119.0 193 41.5
AUR62028419 Chenopodium quinoa HOM05D005478 ORTHO05D006426 5.3e-25 118.6 193 39.9
Sopen02g038220 Solanum pennellii HOM05D005478 ORTHO05D006426 9.0e-25 117.9 183 39.9
FAN05G2721 Fragaria x ananassa HOM05D005478 ORTHO05D006426 1.5e-24 117.1 186 43.0
FvH4_6g51790 Fragaria vesca HOM05D005478 ORTHO05D006426 2.0e-24 116.7 194 41.2
Actinidia05981 Actinidia chinensis HOM05D005478 ORTHO05D006426 2.6e-24 116.3 187 40.1
Solyc02g093450.3 Solanum lycopersicum HOM05D005478 ORTHO05D006426 2.6e-24 116.3 182 38.5
FAN14G4849 Fragaria x ananassa HOM05D005478 ORTHO05D006426 3.4e-24 115.9 194 41.2
PGSC0003DMG400012636 Solanum tuberosum HOM05D005478 ORTHO05D006426 3.4e-24 115.9 182 38.5
TAR629G3442 Trochodendron aralioides HOM05D005478 ORTHO05D006426 3.4e-24 115.9 177 41.8
FAN09G1593 Fragaria x ananassa HOM05D005478 ORTHO05D006426 4.5e-24 115.5 194 41.2
arahy.Tifrunner.gnm1.ann1.47572L Arachis hypogaea HOM05D005478 ORTHO05D006426 5.8e-24 115.2 184 40.8
Eucgr.I01730 Eucalyptus grandis HOM05D005478 ORTHO05D006426 7.6e-24 114.8 194 39.7
MD17G1022200 Malus domestica HOM05D005478 ORTHO05D006426 7.6e-24 114.8 197 40.1
Peaxi162Scf00700g00430 Petunia axillaris HOM05D005478 ORTHO05D006426 9.9e-24 114.4 168 42.3
Lj2g0025845 Lotus japonicus HOM05D005478 ORTHO05D006426 1.3e-23 114.0 178 40.4
ATR0824G160 Amborella trichopoda HOM05D005478 ORTHO05D006426 1.7e-23 113.6 178 38.2
Glyma.19G002600 Glycine max HOM05D005478 ORTHO05D006426 1.7e-23 113.6 178 41.0
Psat1g053440 Pisum sativum HOM05D005478 ORTHO05D006426 3.8e-23 112.5 177 43.5
Oeu048609.1 Olea europaea HOM05D005478 ORTHO05D006426 6.4e-23 111.7 185 41.6
Phvul.004G004600 Phaseolus vulgaris HOM05D005478 ORTHO05D006426 6.4e-23 111.7 186 38.2
HPP92_006182 Vanilla planifolia HOM05D005478 ORTHO05D006426 1.9e-22 110.2 183 39.9
Lalb_Chr24g0403571 Lupinus albus HOM05D005478 ORTHO05D006426 3.2e-22 109.4 196 41.3
vmacro05877 Vaccinium macrocarpon HOM05D005478 ORTHO05D006426 3.2e-22 109.4 217 39.2
CSS0007505 Camellia sinensis var. sinensis HOM05D005478 ORTHO05D006426 4.6e-21 105.5 188 37.8
HanXRQChr07g0199031 Helianthus annuus HOM05D005478 ORTHO05D006426 2.3e-20 103.2 182 36.8
RcHm_v2.0_Chr2g0173291 Rosa chinensis HOM05D005478 ORTHO05D006426 2.3e-20 103.2 187 39.0
SGA_v2.0_scaffold30G12408 Striga asiatica HOM05D005478 ORTHO05D006426 3.9e-20 102.4 182 37.4
CDE09G0806 Ceratophyllum demersum HOM05D005478 ORTHO05D006426 6.7e-20 101.7 181 35.9
PSO478G1356 Papaver somniferum HOM05D005478 ORTHO05D006426 6.7e-20 101.7 187 35.3
arahy.Tifrunner.gnm1.ann1.WAXE9D Arachis hypogaea HOM05D005478 ORTHO05D006426 8.7e-20 101.3 210 35.7
Nn3g16686 Nelumbo nucifera HOM05D005478 ORTHO05D006426 2.5e-19 99.8 177 37.3
Aqoxy5G03740 Aquilegia oxysepala HOM05D005478 ORTHO05D006426 3.3e-19 99.4 181 34.8
PSO017G4510 Papaver somniferum HOM05D005478 ORTHO05D006426 3.3e-19 99.4 186 34.9
Ah.02g128220 Amaranthus hybridus HOM05D005478 ORTHO05D006426 2.8e-18 96.3 193 36.8
MBI14_g36718_MAGBIO Magnolia biondii HOM05D005478 ORTHO05D006426 4.8e-18 95.5 176 37.5
HanXRQChr14g0451171 Helianthus annuus HOM05D005478 ORTHO05D006426 8.1e-18 94.7 184 35.9
Lsat_1_v5_gn_2_91160 Lactuca sativa HOM05D005478 ORTHO05D006426 8.1e-18 94.7 182 37.9
CDE02G4674 Ceratophyllum demersum HOM05D005478 ORTHO05D006426 1.8e-17 93.6 180 33.3
SEGI_00200 Sequoiadendron giganteum HOM05D005478 ORTHO05D006426 2.0e-16 90.1 175 34.3
ECA238G3024 Erigeron canadensis HOM05D005478 ORTHO05D006426 2.6e-16 89.7 184 34.2
vmacro18294 Vaccinium macrocarpon HOM05D005478 ORTHO05D006426 4.5e-16 89.0 224 33.5
PSO063G0871 Papaver somniferum HOM05D005478 ORTHO05D006426 6.4e-15 85.1 176 33.5
PSO754G0087 Papaver somniferum HOM05D005478 ORTHO05D006426 4.2e-14 82.4 176 31.2
Aqoxy1G02464 Aquilegia oxysepala HOM05D005478 ORTHO05D006426 7.1e-14 81.6 161 34.2
Os02g0595300 Oryza sativa ssp. japonica HOM05D005478 ORTHO05D006426 1.6e-10 70.5 193 29.0
Gohir.D05G130900 Gossypium hirsutum HOM05D005478 ORTHO05D006426 2.1e-10 70.1 108 38.0
Dinv33426 Davidia involucrata HOM05D005478 ORTHO05D006426 6.9e-09 65.1 54 61.1
Nn3g16214 Nelumbo nucifera HOM05D005478 ORTHO05D006426 7.6e-08 61.6 50 52.0
Nitab4.5_0005593g0050 Nicotiana tabacum HOM05D005478 ORTHO05D006426 1.0e-07 61.2 165 27.9
Oeu018990.1 Olea europaea HOM05D005478 ORTHO05D006426 1.0e-07 61.2 88 42.0
Dinv25725 Davidia involucrata HOM05D005478 ORTHO05D006426 2.9e-07 59.7 80 46.2
Aa31sc17G60 Aethionema arabicum HOM05D005478 ORTHO05D006426 4.9e-07 58.9 72 56.9
Cc07_g01510 Coffea canephora HOM05D005478 ORTHO05D006426 4.9e-07 58.9 85 45.9
Nn8g38687 Nelumbo nucifera HOM05D046178 ORTHO05D006426 1.9e-06 57.0 57 52.6
Lju41C43G9 Lonicera japonica HOM05D005478 ORTHO05D006426 3.2e-06 56.2 107 35.5
EL10Ac6g14100 Beta vulgaris HOM05D005478 ORTHO05D006426 4.2e-06 55.8 135 39.3
Nitab4.5_0000326g0190 Nicotiana tabacum HOM05D006502 ORTHO05D007704 4.2e-06 55.8 52 51.9


User provided reference genes

Program Settings