Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g16620 Schrenkiella parvula HOM05D006554 ORTHO05D008778 5.5e-136 487.6 247 100.0
Thhalv10004828m.g Eutrema salsugineum HOM05D006554 ORTHO05D008778 1.4e-91 340.1 245 73.9
C02p54190 Brassica napus HOM05D006554 ORTHO05D008778 6.1e-87 324.7 247 68.8
BcaC03g17463 Brassica carinata HOM05D006554 ORTHO05D017433 2.3e-86 322.8 247 68.4
AL5G16780 Arabidopsis lyrata HOM05D006554 ORTHO05D008778 3.0e-86 322.4 247 71.7
BolC2t11482H Brassica oleracea HOM05D006554 ORTHO05D008778 3.4e-85 318.9 247 67.6
AT3G27420 Arabidopsis thaliana HOM05D006554 ORTHO05D008778 5.9e-82 308.1 241 69.7
A02p35470 Brassica napus HOM05D006554 ORTHO05D017433 1.3e-81 307.0 245 66.9
BraA02t08548Z Brassica rapa HOM05D006554 ORTHO05D017433 2.3e-81 306.2 245 66.9
Carub.0005s0577 Capsella rubella HOM05D006554 ORTHO05D008778 1.6e-79 300.1 248 67.3
CARHR148770 Cardamine hirsuta HOM05D006554 ORTHO05D008778 7.8e-66 254.6 251 60.6
AL7G49210 Arabidopsis lyrata HOM05D006554 ORTHO05D008778 3.4e-61 239.2 240 54.6
AT5G40600 Arabidopsis thaliana HOM05D006554 ORTHO05D008778 4.9e-60 235.3 250 52.8
Sp7g01270 Schrenkiella parvula HOM05D006554 ORTHO05D008778 2.4e-59 233.0 248 53.6
Carub.0007s3489 Capsella rubella HOM05D006554 ORTHO05D008778 4.1e-59 232.3 250 51.2
A04p13620 Brassica napus HOM05D004424 ORTHO05D005476 6.6e-57 224.9 249 54.2
BraA04t17023Z Brassica rapa HOM05D004424 ORTHO05D005476 6.6e-57 224.9 249 54.2
BolC4t26342H Brassica oleracea HOM05D006554 ORTHO05D008778 5.6e-56 221.9 249 53.0
CARHR261360 Cardamine hirsuta HOM05D006554 ORTHO05D008778 4.7e-55 218.8 250 52.0
C04p47410 Brassica napus HOM05D004424 ORTHO05D005476 1.4e-54 217.2 249 52.6
Thhalv10027933m.g Eutrema salsugineum HOM05D006554 ORTHO05D008778 4.6e-50 202.2 248 48.4
BolC4t27196H Brassica oleracea HOM05D006554 ORTHO05D008778 8.6e-49 198.0 227 49.3
BcaB07g30158 Brassica carinata HOM05D006554 ORTHO05D008778 1.4e-46 190.7 125 73.6
Aa31LG9G1020 Aethionema arabicum HOM05D006554 ORTHO05D008778 1.9e-43 180.3 248 43.1
BcaB06g27536 Brassica carinata HOM05D006554 ORTHO05D008778 2.6e-37 159.8 163 53.4
ClCG05G012880 Citrullus lanatus HOM05D006554 ORTHO05D008778 2.1e-26 123.6 257 34.2
RcHm_v2.0_Chr2g0173581 Rosa chinensis HOM05D006554 ORTHO05D008778 4.6e-26 122.5 301 34.9
Duzib147G0564 Durio zibethinus HOM05D006554 ORTHO05D008778 1.0e-25 121.3 293 31.7
MELO3C014791.2 Cucumis melo HOM05D006554 ORTHO05D008778 3.9e-25 119.4 254 34.3
CsaV3_3G027590 Cucumis sativus L. HOM05D006554 ORTHO05D008778 6.7e-25 118.6 254 34.3
SGA_v2.0_scaffold135G34926 Striga asiatica HOM05D006554 ORTHO05D008778 2.5e-24 116.7 279 33.0
Lalb_Chr22g0360641 Lupinus albus HOM05D006554 ORTHO05D008778 5.6e-24 115.5 253 34.8
Hma1.2p1_0279F.1_g111960 Hydrangea macrophylla HOM05D006554 ORTHO05D008778 9.6e-24 114.8 223 38.1
MD09G1020300 Malus domestica HOM05D006554 ORTHO05D008778 1.6e-23 114.0 317 33.1
Gohir.D04G059400 Gossypium hirsutum HOM05D006554 ORTHO05D008778 2.1e-23 113.6 277 33.9
Gorai.012G066100 Gossypium raimondii HOM05D006554 ORTHO05D008778 2.1e-23 113.6 277 33.9
BcaC06g30992 Brassica carinata HOM05D000131 ORTHO05D008778 2.8e-23 113.2 76 76.3
Prupe.3G295900 Prunus persica HOM05D006554 ORTHO05D008778 3.7e-23 112.8 316 33.9
Cfa007322 Carpinus fangiana HOM05D006554 ORTHO05D008778 6.2e-23 112.1 287 32.1
Glyma.19G079100 Glycine max HOM05D006554 ORTHO05D008778 6.2e-23 112.1 287 31.4
Gohir.A05G353700 Gossypium hirsutum HOM05D006554 ORTHO05D008778 6.2e-23 112.1 277 33.6
Medtr7g032890 Medicago truncatula HOM05D006554 ORTHO05D008778 6.2e-23 112.1 299 31.1
TPR.G1120 Trifolium pratense HOM05D006554 ORTHO05D008778 6.2e-23 112.1 288 33.0
PGR083G2647 Punica granatum HOM05D006554 ORTHO05D008778 8.1e-23 111.7 253 34.8
EL10Ac5g11640 Beta vulgaris HOM05D006554 ORTHO05D008778 1.1e-22 111.3 298 32.9
Manes.15G153200 Manihot esculenta HOM05D006554 ORTHO05D008778 1.1e-22 111.3 315 31.7
Haze_14775 Corylus avellana HOM05D006554 ORTHO05D008778 1.8e-22 110.5 287 31.7
Phvul.008G147100 Phaseolus vulgaris HOM05D006554 ORTHO05D008778 2.4e-22 110.2 286 31.5
QL02p073734 Quercus lobata HOM05D006554 ORTHO05D008778 4.0e-22 109.4 265 32.5
Sed0003688 Sechium edule HOM05D006554 ORTHO05D008778 4.0e-22 109.4 257 32.3
Ah.03g136830 Amaranthus hybridus HOM05D003292 ORTHO05D004237 6.9e-22 108.6 221 37.6
RhsimUnG0087800 Rhododendron simsii HOM05D006554 ORTHO05D008778 6.9e-22 108.6 282 33.7
MSTRG.3126 Avicennia marina HOM05D006554 ORTHO05D008778 1.5e-21 107.5 288 31.9
FAN02G3632 Fragaria x ananassa HOM05D006554 ORTHO05D008778 2.6e-21 106.7 270 35.2
RhsimUnG0005800 Rhododendron simsii HOM05D006554 ORTHO05D008778 2.6e-21 106.7 266 33.5
Lj1g0005465 Lotus japonicus HOM05D006554 ORTHO05D008778 4.5e-21 105.9 269 32.3
Potri.003G101100 Populus trichocarpa HOM05D006554 ORTHO05D008778 5.8e-21 105.5 275 30.9
Glyma.16G067800 Glycine max HOM05D006554 ORTHO05D008778 1.7e-20 104.0 288 30.2
vmacro05891 Vaccinium macrocarpon HOM05D006554 ORTHO05D008778 2.2e-20 103.6 284 31.7
unitig_52.g17657 Utricularia gibba HOM05D006554 ORTHO05D008778 2.9e-20 103.2 231 33.8
AUR62028440 Chenopodium quinoa HOM05D006554 ORTHO05D008778 4.9e-20 102.4 213 35.7
FvH4_6g52060 Fragaria vesca HOM05D006554 ORTHO05D008778 4.9e-20 102.4 266 35.3
FAN09G2431 Fragaria x ananassa HOM05D006554 ORTHO05D008778 6.5e-20 102.1 264 34.1
FAN05G3817 Fragaria x ananassa HOM05D006554 ORTHO05D008778 1.4e-19 100.9 263 34.6
FAN14G0519 Fragaria x ananassa HOM05D006554 ORTHO05D008778 1.9e-19 100.5 278 32.7
TAR629G0722 Trochodendron aralioides HOM05D006554 ORTHO05D008778 3.2e-19 99.8 132 42.4
Ciclev10015858m.g Citrus clementina HOM05D006554 ORTHO05D008778 5.5e-19 99.0 122 45.1
arahy.Tifrunner.gnm1.ann1.1L0SFZ Arachis hypogaea HOM05D006554 ORTHO05D008778 7.1e-19 98.6 318 29.9
Nn4g22538 Nelumbo nucifera HOM05D006554 ORTHO05D008778 7.1e-19 98.6 227 34.8
SalBow1G4569 Salvia bowleyana HOM05D006554 ORTHO05D008778 2.7e-18 96.7 276 29.3
ECA246G2886 Erigeron canadensis HOM05D006554 ORTHO05D008778 4.6e-18 95.9 120 45.8
Cc07_g00120 Coffea canephora HOM05D006554 ORTHO05D008778 7.9e-18 95.1 205 32.2
ATR0199G021 Amborella trichopoda HOM05D006554 ORTHO05D008778 1.0e-17 94.7 264 30.3
GSVIVG01032362001 Vitis vinifera HOM05D006554 ORTHO05D008778 1.0e-17 94.7 130 43.1
Dinv33413 Davidia involucrata HOM05D006554 ORTHO05D008778 1.3e-17 94.4 139 41.7
Sabra03G0068900 Salix brachista HOM05D006554 ORTHO05D008778 1.8e-17 94.0 142 40.1
Atru.chr6.2449 Acer truncatum HOM05D006554 ORTHO05D008778 3.0e-17 93.2 102 47.1
CANSAT64G1839 Cannabis sativa HOM05D006554 ORTHO05D008778 3.9e-17 92.8 319 30.4
Thecc.04G022100 Theobroma cacao HOM05D006554 ORTHO05D008778 1.5e-16 90.9 150 36.0
Prupe.3G207500 Prunus persica HOM05D006554 ORTHO05D008778 4.3e-16 89.4 290 31.7
Lsat_1_v5_gn_0_6020 Lactuca sativa HOM05D006554 ORTHO05D008778 5.7e-16 89.0 122 45.1
Migut.H00036 Erythranthe guttata HOM05D006554 ORTHO05D008778 1.3e-15 87.8 180 31.1
CiPaw.04G030700 Carya illinoinensis HOM05D006554 ORTHO05D008778 1.6e-15 87.4 278 30.2
Aqoxy5G03668 Aquilegia oxysepala HOM05D006554 ORTHO05D008778 2.1e-15 87.0 123 39.0
Hund23035 Selenicereus undatus HOM05D006554 ORTHO05D008778 3.7e-15 86.3 274 29.9
Eucgr.J02264 Eucalyptus grandis HOM05D006554 ORTHO05D008778 6.3e-15 85.5 158 37.3
FAN14G5462 Fragaria x ananassa HOM05D006554 ORTHO05D008778 8.2e-15 85.1 329 29.5
Peaxi162Scf00080g01410 Petunia axillaris HOM05D006554 ORTHO05D008778 8.2e-15 85.1 121 40.5
CSS0050446 Camellia sinensis var. sinensis HOM05D006554 ORTHO05D008778 9.0e-14 81.6 151 37.1
Sopen02g017020 Solanum pennellii HOM05D006554 ORTHO05D008778 2.6e-13 80.1 332 28.3
HPP92_003738 Vanilla planifolia HOM05D006554 ORTHO05D008778 3.4e-13 79.7 96 45.8
Solyc02g067900.3 Solanum lycopersicum HOM05D006554 ORTHO05D008778 4.5e-13 79.3 327 27.5
VMungo1383G1633 Vigna mungo HOM05D006554 ORTHO05D008778 4.5e-13 79.3 106 41.5
Nitab4.5_0000040g0640 Nicotiana tabacum HOM05D006554 ORTHO05D008778 5.9e-13 79.0 130 39.2
Nitab4.5_0004496g0080 Nicotiana tabacum HOM05D006554 ORTHO05D008778 1.7e-12 77.4 134 38.8
PSO675G3751 Papaver somniferum HOM05D006554 ORTHO05D008778 5.0e-12 75.9 133 36.1
PGSC0003DMG400006964 Solanum tuberosum HOM05D006554 ORTHO05D008778 5.0e-12 75.9 193 30.6
SHI53794 Sapria himalayana HOM05D006554 ORTHO05D008778 6.5e-12 75.5 166 31.3
PSO541G1758 Papaver somniferum HOM05D006554 ORTHO05D008778 5.5e-11 72.4 133 34.6
CSS0049853 Camellia sinensis var. sinensis HOM05D006554 ORTHO05D008778 1.2e-10 71.2 72 50.0
Actinidia05967 Actinidia chinensis HOM05D006554 ORTHO05D008778 6.1e-10 68.9 107 41.1
CDE09G0234 Ceratophyllum demersum HOM05D006554 ORTHO05D008778 1.8e-09 67.4 96 43.8
CDE02G2727 Ceratophyllum demersum HOM05D003393 ORTHO05D003916 8.7e-09 65.1 134 34.3
Oeu050455.2 Olea europaea HOM05D006554 ORTHO05D008778 1.1e-08 64.7 218 26.1
BcaNung00174 Brassica carinata HOM05D000169 ORTHO05D091542 2.8e-07 60.1 72 47.2
Psat7g108920 Pisum sativum HOM05D006554 ORTHO05D008778 1.8e-06 57.4 204 30.4
Mapoly0010s0030 Marchantia polymorpha HOM05D000336 ORTHO05D002705 5.3e-06 55.8 91 38.5


User provided reference genes

Program Settings