Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g16550 Schrenkiella parvula HOM05D013829 ORTHO05D015952 4.3e-89 331.3 163 100.0
BcaC06g33826 Brassica carinata HOM05D013829 ORTHO05D015952 1.2e-70 270.0 168 85.7
C07p36420 Brassica napus HOM05D013829 ORTHO05D015952 2.0e-62 242.7 170 78.8
A06p41240 Brassica napus HOM05D013829 ORTHO05D015952 2.5e-60 235.7 173 78.0
BraA06t27048Z Brassica rapa HOM05D013829 ORTHO05D015952 2.5e-60 235.7 173 78.0
BolC7t44160H Brassica oleracea HOM05D013829 ORTHO05D015952 6.1e-59 231.1 175 76.0
Carub.0005s0566 Capsella rubella HOM05D013829 ORTHO05D015952 1.4e-50 203.4 171 67.8
AL5G16690 Arabidopsis lyrata HOM05D013829 ORTHO05D015952 2.0e-46 189.5 165 66.7
BcaNung05649 Brassica carinata HOM05D013829 ORTHO05D015952 5.5e-44 181.4 170 63.5
AT3G27355 Arabidopsis thaliana HOM05D013829 ORTHO05D015952 4.7e-43 178.3 170 61.8
CARHR148680 Cardamine hirsuta HOM05D013829 ORTHO05D015952 8.0e-35 151.0 128 64.8
Aa31LG2G5400 Aethionema arabicum HOM05D004407 ORTHO05D005074 1.5e-33 146.7 198 49.5
THA.LOC104825308 Tarenaya hassleriana HOM05D004407 ORTHO05D005074 3.3e-20 102.4 201 41.3
PGR083G0262 Punica granatum HOM05D004407 ORTHO05D005074 1.3e-16 90.5 199 36.7
CARHR213820 Cardamine hirsuta HOM05D004407 ORTHO05D005074 1.9e-15 86.7 215 37.7
Nn3g16588 Nelumbo nucifera HOM05D004407 ORTHO05D005074 5.4e-15 85.1 197 33.0
BolC4t26352H Brassica oleracea HOM05D004407 ORTHO05D005074 2.0e-14 83.2 207 38.6
Eucgr.J02274 Eucalyptus grandis HOM05D004407 ORTHO05D005074 2.7e-14 82.8 207 34.8
THA.LOC104805351 Tarenaya hassleriana HOM05D004407 ORTHO05D005074 4.6e-14 82.0 205 37.1
A04p13730 Brassica napus HOM05D004407 ORTHO05D005074 6.0e-14 81.6 223 36.8
Thhalv10028030m.g Eutrema salsugineum HOM05D004407 ORTHO05D005074 1.3e-13 80.5 195 37.4
MD09G1018600 Malus domestica HOM05D004407 ORTHO05D005074 3.0e-13 79.3 198 33.3
QL02p073303 Quercus lobata HOM05D004407 ORTHO05D005074 5.0e-13 78.6 208 33.2
QL02p073308 Quercus lobata HOM05D004407 ORTHO05D005074 5.0e-13 78.6 208 33.2
Sed0027888 Sechium edule HOM05D004407 ORTHO05D005074 1.5e-12 77.0 188 36.2
Thecc.04G026300 Theobroma cacao HOM05D004407 ORTHO05D005074 1.5e-12 77.0 214 35.0
MD17G1019100 Malus domestica HOM05D004407 ORTHO05D005074 1.9e-12 76.6 206 31.6
BraA04t17032Z Brassica rapa HOM05D004407 ORTHO05D005074 3.3e-12 75.9 226 35.0
Carub.0007s3479 Capsella rubella HOM05D004407 ORTHO05D005074 3.3e-12 75.9 214 36.4
CAN.G473.50 Capsicum annuum HOM05D004407 ORTHO05D005074 3.3e-12 75.9 196 35.2
Gorai.012G091100 Gossypium raimondii HOM05D004407 ORTHO05D005074 4.3e-12 75.5 201 35.3
TWI36G1179 Tripterygium wilfordii HOM05D004407 ORTHO05D005074 7.3e-12 74.7 188 31.9
Gohir.D04G080420 Gossypium hirsutum HOM05D004407 ORTHO05D005074 9.5e-12 74.3 199 36.7
Haze_14799 Corylus avellana HOM05D002760 ORTHO05D003169 1.2e-11 73.9 200 32.5
Duzib187G1586 Durio zibethinus HOM05D004407 ORTHO05D005074 1.2e-11 73.9 209 32.5
Nn4g22470 Nelumbo nucifera HOM05D004407 ORTHO05D005074 1.2e-11 73.9 200 32.5
CANSAT64G2558 Cannabis sativa HOM05D004407 ORTHO05D005074 2.1e-11 73.2 211 33.6
CiPaw.03G049400 Carya illinoinensis HOM05D004407 ORTHO05D005074 2.1e-11 73.2 209 33.0
Sp7g01180 Schrenkiella parvula HOM05D004407 ORTHO05D005074 4.7e-11 72.0 118 42.4
Ciclev10017684m.g Citrus clementina HOM05D004407 ORTHO05D005074 6.2e-11 71.6 214 32.7
BcaB02g07933 Brassica carinata HOM05D004407 ORTHO05D005074 1.4e-10 70.5 204 36.3
CSS0009144 Camellia sinensis var. sinensis HOM05D000045 ORTHO05D000067 1.4e-10 70.5 215 30.7
Thhalv10028148m.g Eutrema salsugineum HOM05D004407 ORTHO05D005074 1.4e-10 70.5 214 36.4
FvH4_6g52330 Fragaria vesca HOM05D004407 ORTHO05D005074 1.4e-10 70.5 191 32.5
Aqoxy3G01382 Aquilegia oxysepala HOM05D004407 ORTHO05D005074 2.3e-10 69.7 192 32.3
Prupe.3G298600 Prunus persica HOM05D004407 ORTHO05D005074 2.3e-10 69.7 204 33.3
Aa31LG9G940 Aethionema arabicum HOM05D004407 ORTHO05D005074 3.1e-10 69.3 185 37.3
PGSC0003DMG400012626 Solanum tuberosum HOM05D004407 ORTHO05D005074 3.1e-10 69.3 194 34.0
Nitab4.5_0001863g0220 Nicotiana tabacum HOM05D004407 ORTHO05D005074 6.8e-10 68.2 216 32.4
Sabra16G0217100 Salix brachista HOM05D004407 ORTHO05D005074 6.8e-10 68.2 202 31.7
Nitab4.5_0001031g0160 Nicotiana tabacum HOM05D004407 ORTHO05D005074 1.2e-09 67.4 214 32.7
Sopen02g038350 Solanum pennellii HOM05D004407 ORTHO05D005074 1.2e-09 67.4 194 35.1
TAR622G1038 Trochodendron aralioides HOM05D004407 ORTHO05D005074 1.2e-09 67.4 200 34.5
Solyc02g093710.1 Solanum lycopersicum HOM05D004407 ORTHO05D005074 2.0e-09 66.6 194 34.5
Manes.15G155400 Manihot esculenta HOM05D004407 ORTHO05D005074 2.6e-09 66.2 228 28.9
C04p47510 Brassica napus HOM05D004407 ORTHO05D005074 4.4e-09 65.5 230 33.9
Gohir.A09G032000 Gossypium hirsutum HOM05D004407 ORTHO05D005074 4.4e-09 65.5 218 31.7
Potri.001G336200 Populus trichocarpa HOM05D004407 ORTHO05D005074 4.4e-09 65.5 209 33.5
Thecc.04G026400 Theobroma cacao HOM05D004407 ORTHO05D005074 5.8e-09 65.1 223 28.7
VMungo1383G1696 Vigna mungo HOM05D004407 ORTHO05D005074 5.8e-09 65.1 176 29.5
Medtr1g051195 Medicago truncatula HOM05D004407 ORTHO05D005074 7.5e-09 64.7 172 34.3
GSVIVG01003970001 Vitis vinifera HOM05D004407 ORTHO05D005074 1.3e-08 63.9 50 64.0
BcaNung06207 Brassica carinata HOM05D002252 ORTHO05D002451 1.7e-08 63.5 36 88.9
EL10Ac4g07679 Beta vulgaris HOM05D004407 ORTHO05D005074 2.2e-08 63.2 50 62.0
Cc07_g00320 Coffea canephora HOM05D004407 ORTHO05D005074 2.9e-08 62.8 217 31.3
ClCG09G019590 Citrullus lanatus HOM05D004407 ORTHO05D005074 6.4e-08 61.6 185 30.3
CsaV3_5G026800 Cucumis sativus L. HOM05D004407 ORTHO05D005074 6.4e-08 61.6 185 30.8
FAN05G1079 Fragaria x ananassa HOM05D004407 ORTHO05D005074 6.4e-08 61.6 191 30.4
COL.COLO4_29257 Corchorus olitorius HOM05D004407 ORTHO05D005074 8.3e-08 61.2 89 41.6
MELO3C021614.2 Cucumis melo HOM05D004407 ORTHO05D005074 1.1e-07 60.8 50 62.0
Phvul.008G156900 Phaseolus vulgaris HOM05D004407 ORTHO05D005074 1.4e-07 60.5 178 28.7
TPR.G1219 Trifolium pratense HOM05D004407 ORTHO05D005074 1.4e-07 60.5 47 61.7
Sed0005342 Sechium edule HOM05D004407 ORTHO05D005074 1.9e-07 60.1 184 31.5
Cpa.g.sc130.51 Carica papaya HOM05D004407 ORTHO05D005074 2.4e-07 59.7 205 29.8
Gorai.006G037000 Gossypium raimondii HOM05D004407 ORTHO05D005074 2.4e-07 59.7 203 31.0
Hma1.2p1_1484F.1_g286410 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 2.4e-07 59.7 104 44.2
TAR625G1142 Trochodendron aralioides HOM05D004407 ORTHO05D005074 2.4e-07 59.7 110 37.3
Oeu054661.1 Olea europaea HOM05D004407 ORTHO05D005074 3.2e-07 59.3 186 30.6
TPR.G1105 Trifolium pratense HOM05D004407 ORTHO05D005074 3.2e-07 59.3 47 61.7
Hma1.2p1_1484F.1_g286420 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 4.1e-07 58.9 104 44.2
Rhsim10G0012400 Rhododendron simsii HOM05D004407 ORTHO05D005074 4.1e-07 58.9 50 62.0
Dinv25704 Davidia involucrata HOM05D004407 ORTHO05D005074 5.4e-07 58.5 187 35.8
Gohir.A05G342300 Gossypium hirsutum HOM05D004407 ORTHO05D005074 7.1e-07 58.2 180 33.3
Hma1.2p1_0818F.1_g223530 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 9.2e-07 57.8 50 60.0
Hma1.2p1_0818F.1_g223550 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 9.2e-07 57.8 104 42.3
Hma1.2p1_1484F.1_g286386 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 9.2e-07 57.8 50 60.0
BcaC04g22350 Brassica carinata HOM05D004407 ORTHO05D005074 1.2e-06 57.4 75 44.0
C09p20260 Brassica napus HOM05D006758 ORTHO05D008326 1.2e-06 57.4 75 44.0
BolC9t54931H Brassica oleracea HOM05D006758 ORTHO05D008326 1.2e-06 57.4 75 44.0
Sed0009704 Sechium edule HOM05D004407 ORTHO05D005074 1.6e-06 57.0 178 30.9
Hma1.2p1_0818F.1_g223510 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 2.1e-06 56.6 104 42.3
Hma1.2p1_1484F.1_g286390 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 2.1e-06 56.6 104 42.3
MBI11_g29154_MAGBIO Magnolia biondii HOM05D004407 ORTHO05D005074 2.1e-06 56.6 205 32.2
Ca_03872_v3 Cicer arietinum L. HOM05D004407 ORTHO05D005074 2.7e-06 56.2 48 64.6
DCAR_015074 Daucus carota HOM05D004407 ORTHO05D005074 3.5e-06 55.8 50 54.0
AL7G49050 Arabidopsis lyrata HOM05D004407 ORTHO05D005074 4.6e-06 55.5 119 36.1
CANSAT64G1834 Cannabis sativa HOM05D004407 ORTHO05D005074 4.6e-06 55.5 50 58.0
Psat0s1368g0080 Pisum sativum HOM05D004407 ORTHO05D005074 4.6e-06 55.5 137 35.0
Actinidia05950 Actinidia chinensis HOM05D004407 ORTHO05D005074 6.0e-06 55.1 201 32.3
Ah.06g182110 Amaranthus hybridus HOM05D004407 ORTHO05D005074 7.8e-06 54.7 227 27.8
DCAR_015072 Daucus carota HOM05D004407 ORTHO05D005074 7.8e-06 54.7 50 54.0
Hma1.2p1_0818F.1_g223560 Hydrangea macrophylla HOM05D004407 ORTHO05D005074 7.8e-06 54.7 50 58.0


User provided reference genes

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