Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g16530 Schrenkiella parvula HOM05D006998 ORTHO05D008733 8.5e-73 276.9 143 100.0
A02p35400 Brassica napus HOM05D006998 ORTHO05D008733 7.7e-66 253.8 135 91.9
C02p54110 Brassica napus HOM05D006998 ORTHO05D008733 1.0e-65 253.4 135 91.9
BolC2t11473H Brassica oleracea HOM05D006998 ORTHO05D008733 1.0e-65 253.4 135 91.9
BraA02t08541Z Brassica rapa HOM05D006998 ORTHO05D008733 1.7e-65 252.7 135 91.1
BcaC06g31012 Brassica carinata HOM05D006998 ORTHO05D008733 2.2e-65 252.3 135 91.9
C07p36390 Brassica napus HOM05D006998 ORTHO05D008733 2.9e-65 251.9 135 91.1
A06p41260 Brassica napus HOM05D006998 ORTHO05D008733 2.5e-64 248.8 135 89.6
BraA06t27050Z Brassica rapa HOM05D006998 ORTHO05D008733 2.5e-64 248.8 135 89.6
BolC7t44158H Brassica oleracea HOM05D006998 ORTHO05D008733 7.2e-64 247.3 135 88.1
Carub.0005s0564 Capsella rubella HOM05D006998 ORTHO05D008733 9.4e-64 246.9 136 89.0
AL5G16660 Arabidopsis lyrata HOM05D006998 ORTHO05D008733 8.0e-63 243.8 135 87.4
Aa31LG2G5380 Aethionema arabicum HOM05D006998 ORTHO05D008733 2.8e-60 235.3 136 83.8
THA.LOC104823962 Tarenaya hassleriana HOM05D006998 ORTHO05D008733 1.4e-59 233.0 135 83.0
THA.LOC104823963 Tarenaya hassleriana HOM05D006998 ORTHO05D008733 1.4e-59 233.0 135 83.0
Sabra16G0217400 Salix brachista HOM05D006998 ORTHO05D008733 2.2e-49 199.1 126 73.0
Potri.001G336600 Populus trichocarpa HOM05D006998 ORTHO05D008733 3.8e-49 198.4 126 72.2
Ciclev10017134m.g Citrus clementina HOM05D006998 ORTHO05D008733 1.9e-48 196.1 126 72.2
Gohir.D07G232600 Gossypium hirsutum HOM05D006998 ORTHO05D008733 1.9e-48 196.1 128 72.7
Gorai.001G267900 Gossypium raimondii HOM05D006998 ORTHO05D008733 1.9e-48 196.1 128 72.7
QL02p001451 Quercus lobata HOM05D006998 ORTHO05D008733 3.2e-48 195.3 126 73.8
Gohir.A07G225400 Gossypium hirsutum HOM05D006998 ORTHO05D008733 9.4e-48 193.7 128 72.7
Manes.15G155800 Manihot esculenta HOM05D006998 ORTHO05D008733 1.2e-47 193.4 126 72.2
Cpa.g.sc130.46 Carica papaya HOM05D006998 ORTHO05D008733 1.6e-47 193.0 126 70.6
Duzib147G0953 Durio zibethinus HOM05D006998 ORTHO05D008733 2.1e-47 192.6 126 72.2
Thecc.04G025300 Theobroma cacao HOM05D006998 ORTHO05D008733 2.7e-47 192.2 125 75.2
Atru.chr6.2476 Acer truncatum HOM05D006998 ORTHO05D008733 3.6e-47 191.8 135 68.9
COL.COLO4_29269 Corchorus olitorius HOM05D006998 ORTHO05D008733 6.1e-47 191.0 126 72.2
CiPaw.13G047700 Carya illinoinensis HOM05D006998 ORTHO05D008733 3.0e-46 188.7 135 68.9
Sed0003364 Sechium edule HOM05D006998 ORTHO05D008733 6.8e-46 187.6 126 69.8
arahy.Tifrunner.gnm1.ann1.W3WD4H Arachis hypogaea HOM05D006998 ORTHO05D008733 8.8e-46 187.2 121 73.6
TPR.G39742 Trifolium pratense HOM05D006998 ORTHO05D008733 8.8e-46 187.2 129 69.8
MELO3C014841.2 Cucumis melo HOM05D006998 ORTHO05D008733 1.5e-45 186.4 135 67.4
PSO782G5351 Papaver somniferum HOM05D006998 ORTHO05D008733 5.7e-45 184.5 126 67.5
MSTRG.3117 Avicennia marina HOM05D006998 ORTHO05D008733 7.5e-45 184.1 115 72.2
Medtr3g052740 Medicago truncatula HOM05D006998 ORTHO05D008733 1.3e-44 183.3 127 70.9
GSVIVG01003966001 Vitis vinifera HOM05D006998 ORTHO05D008733 1.3e-44 183.3 126 69.8
Phvul.006G045900 Phaseolus vulgaris HOM05D006998 ORTHO05D008733 1.7e-44 183.0 129 69.0
Lj6g0003593 Lotus japonicus HOM05D006998 ORTHO05D008733 2.2e-44 182.6 129 69.0
AUR62015328 Chenopodium quinoa HOM05D006998 ORTHO05D008733 2.8e-44 182.2 135 68.9
TWI56G1021 Tripterygium wilfordii HOM05D006998 ORTHO05D008733 2.8e-44 182.2 126 68.3
Ah.13g075640 Amaranthus hybridus HOM05D000240 ORTHO05D001153 4.8e-44 181.4 135 67.4
EL10Ac3g06878 Beta vulgaris HOM05D006998 ORTHO05D008733 4.8e-44 181.4 127 69.3
CANSAT64G0830 Cannabis sativa HOM05D006998 ORTHO05D008733 4.8e-44 181.4 126 66.7
Lalb_Chr20g0116091 Lupinus albus HOM05D006998 ORTHO05D008733 6.3e-44 181.0 126 69.0
Glyma.08G318800 Glycine max HOM05D006998 ORTHO05D008733 8.3e-44 180.6 134 66.4
TPR.G33763 Trifolium pratense HOM05D006998 ORTHO05D008733 8.3e-44 180.6 140 65.0
Ca_14748_v3 Cicer arietinum L. HOM05D006998 ORTHO05D008733 1.1e-43 180.3 125 69.6
MD09G1018100 Malus domestica HOM05D006998 ORTHO05D008733 1.1e-43 180.3 126 68.3
FAN14G5586 Fragaria x ananassa HOM05D006998 ORTHO05D008733 1.4e-43 179.9 126 69.0
TAR371G1002 Trochodendron aralioides HOM05D006998 ORTHO05D008733 1.8e-43 179.5 126 67.5
Aqoxy1G01464 Aquilegia oxysepala HOM05D006998 ORTHO05D008733 2.4e-43 179.1 126 65.1
MBI06_g05240_MAGBIO Magnolia biondii HOM05D006998 ORTHO05D008733 3.1e-43 178.7 133 64.7
Sc03g0006900 Simmondsia chinensis HOM05D006998 ORTHO05D008733 3.1e-43 178.7 135 65.2
arahy.Tifrunner.gnm1.ann1.24IP75 Arachis hypogaea HOM05D006998 ORTHO05D008733 4.1e-43 178.3 121 71.1
ClCG05G013170 Citrullus lanatus HOM05D006998 ORTHO05D008733 4.1e-43 178.3 102 80.4
Eucgr.I01699 Eucalyptus grandis HOM05D006998 ORTHO05D008733 4.1e-43 178.3 135 63.7
Solyc02g093730.4 Solanum lycopersicum HOM05D006998 ORTHO05D008733 4.1e-43 178.3 134 62.7
Sc03g0007000 Simmondsia chinensis HOM05D006998 ORTHO05D008733 5.4e-43 177.9 135 65.2
Zm00001eb144320 Zea mays HOM05D006998 ORTHO05D008733 1.6e-42 176.4 126 65.9
RcHm_v2.0_Chr2g0174071 Rosa chinensis HOM05D006998 ORTHO05D008733 2.7e-42 175.6 135 65.2
CsaV3_3G027380 Cucumis sativus L. HOM05D006998 ORTHO05D008733 3.5e-42 175.3 102 78.4
Actinidia18425 Actinidia chinensis HOM05D006998 ORTHO05D008733 4.5e-42 174.9 126 62.7
MBI06_g43854_MAGBIO Magnolia biondii HOM05D006998 ORTHO05D008733 4.5e-42 174.9 107 72.0
PGSC0003DMG400012647 Solanum tuberosum HOM05D006998 ORTHO05D008733 4.5e-42 174.9 134 61.9
Cc07_g00360 Coffea canephora HOM05D006998 ORTHO05D008733 7.7e-42 174.1 118 67.8
Lsat_1_v5_gn_4_184841 Lactuca sativa HOM05D006998 ORTHO05D008733 2.9e-41 172.2 115 68.7
ECA232G0345 Erigeron canadensis HOM05D006998 ORTHO05D008733 6.5e-41 171.0 115 68.7
HanXRQChr09g0255661 Helianthus annuus HOM05D006998 ORTHO05D008733 8.6e-41 170.6 115 67.8
SalBow2G2409 Salvia bowleyana HOM05D006998 ORTHO05D008733 8.6e-41 170.6 115 67.8
CDE04G0536 Ceratophyllum demersum HOM05D006998 ORTHO05D008733 3.3e-40 168.7 115 67.8
FAN05G2331 Fragaria x ananassa HOM05D006998 ORTHO05D008733 4.2e-40 168.3 125 65.6
vmacro18311 Vaccinium macrocarpon HOM05D006998 ORTHO05D008733 4.2e-40 168.3 125 63.2
Migut.H00050 Erythranthe guttata HOM05D006998 ORTHO05D008733 5.5e-40 167.9 113 68.1
SGA_v2.0_scaffold135G34933 Striga asiatica HOM05D006998 ORTHO05D008733 7.2e-40 167.5 115 66.1
CAN.G473.52 Capsicum annuum HOM05D006998 ORTHO05D008733 2.1e-39 166.0 102 73.5
Os02g0197800 Oryza sativa ssp. japonica HOM05D006998 ORTHO05D008733 2.1e-39 166.0 127 61.4
PSO063G6009 Papaver somniferum HOM05D006998 ORTHO05D008733 2.8e-39 165.6 169 50.9
Nitab4.5_0005414g0020 Nicotiana tabacum HOM05D006998 ORTHO05D008733 4.7e-39 164.9 108 67.6
Peaxi162Scf00080g01715 Petunia axillaris HOM05D006998 ORTHO05D008733 6.1e-39 164.5 102 70.6
Nitab4.5_0000040g0550 Nicotiana tabacum HOM05D006998 ORTHO05D008733 1.0e-38 163.7 102 70.6
CDE07G0016 Ceratophyllum demersum HOM05D006998 ORTHO05D008733 1.8e-38 162.9 102 73.5
Os01g0904300 Oryza sativa ssp. japonica HOM05D006998 ORTHO05D008733 4.0e-38 161.8 108 68.5
SalBow2G0885 Salvia bowleyana HOM05D006998 ORTHO05D008733 4.0e-38 161.8 102 72.5
CARHR148660 Cardamine hirsuta HOM05D006998 ORTHO05D008733 2.0e-37 159.5 90 87.8
HPP92_007225 Vanilla planifolia HOM05D006998 ORTHO05D008733 2.6e-37 159.1 112 66.1
ATR1089G022 Amborella trichopoda HOM05D006998 ORTHO05D008733 5.7e-37 157.9 130 59.2
AT3G27340 Arabidopsis thaliana HOM05D006998 ORTHO05D008733 1.7e-36 156.4 91 84.6
arahy.Tifrunner.gnm1.ann1.5E1CRJ Arachis hypogaea HOM05D006998 ORTHO05D008733 2.8e-36 155.6 121 62.8
Thhalv10005152m.g Eutrema salsugineum HOM05D006998 ORTHO05D008733 6.3e-36 154.5 87 88.5
Hund25052 Selenicereus undatus HOM05D006998 ORTHO05D008733 3.5e-34 148.7 114 63.2
SHI03852 Sapria himalayana HOM05D006998 ORTHO05D008733 1.7e-33 146.4 94 70.2
AagrBONN_evm.TU.Sc2ySwM_362.2114 Anthoceros agrestis HOM05D006998 ORTHO05D008733 2.1e-31 139.4 103 61.2
SMO364G0335 Selaginella moellendorffii HOM05D006998 ORTHO05D008733 3.2e-27 125.6 101 56.4
VMungo0540G0081 Vigna mungo HOM05D006998 ORTHO05D008733 1.2e-26 123.6 87 66.7
Pp3c11_10230 Physcomitrium patens HOM05D006998 ORTHO05D008733 3.5e-26 122.1 104 53.8
Dinv25701 Davidia involucrata HOM05D006998 ORTHO05D008733 1.3e-25 120.2 67 79.1
DCAR_011285 Daucus carota HOM05D006998 ORTHO05D008733 6.6e-25 117.9 66 80.3
unitig_744.g24361 Utricularia gibba HOM05D002252 ORTHO05D002451 1.6e-23 113.2 81 63.0
Haze_03392 Corylus avellana HOM05D006998 ORTHO05D008733 2.1e-23 112.8 90 67.8
Haze_03396 Corylus avellana HOM05D006998 ORTHO05D008733 2.1e-23 112.8 90 67.8
CBR_g38954 Chara braunii HOM05D006723 ORTHO05D008194 6.2e-23 111.3 98 50.0
Cfa010438 Carpinus fangiana HOM05D006998 ORTHO05D008733 1.1e-22 110.5 90 66.7
COL.COLO4_29265 Corchorus olitorius HOM05D006998 ORTHO05D008733 2.3e-22 109.4 82 67.1
THA.LOC104801054 Tarenaya hassleriana HOM05D002401 ORTHO05D007109 2.3e-22 109.4 87 65.5
FAN02G1980 Fragaria x ananassa HOM05D006998 ORTHO05D008733 2.6e-21 105.9 82 65.9
Psat5g174840 Pisum sativum HOM05D006998 ORTHO05D008733 3.4e-21 105.5 84 63.1
PGR142G0400 Punica granatum HOM05D006998 ORTHO05D008733 3.7e-20 102.1 91 57.1
Nn5g27086 Nelumbo nucifera HOM05D006998 ORTHO05D008733 1.4e-19 100.1 75 64.0
BcaB01g01217 Brassica carinata HOM05D006998 ORTHO05D008733 6.0e-18 94.7 68 70.6
Sed0022519 Sechium edule HOM05D006998 ORTHO05D008733 7.5e-13 77.8 44 70.5
Mapoly0001s0548 Marchantia polymorpha HOM05D006998 ORTHO05D008733 1.1e-11 73.9 66 59.1
Medtr1252s0010 Medicago truncatula HOM05D006998 ORTHO05D008733 3.2e-11 72.4 86 44.2
Sed0018714 Sechium edule HOM05D006998 ORTHO05D008733 3.5e-10 68.9 60 53.3
Dinv33390 Davidia involucrata HOM05D006998 ORTHO05D008733 4.6e-10 68.6 63 54.0
FvH4_6g52430 Fragaria vesca HOM05D006998 ORTHO05D008733 3.9e-09 65.5 60 55.0
Prupe.3G299000 Prunus persica HOM05D000008 ORTHO05D000005 6.6e-09 64.7 60 51.7
Cre09.g413300 Chlamydomonas reinhardtii HOM05D006998 ORTHO05D008733 2.5e-08 62.8 57 47.4


User provided reference genes

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