Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g16300 Schrenkiella parvula HOM05D005888 ORTHO05D007791 4.6e-299 1030.4 506 100.0
C07p36200 Brassica napus HOM05D005888 ORTHO05D007791 7.2e-284 979.9 514 94.0
BolC7t44136H Brassica oleracea HOM05D005888 ORTHO05D007791 7.2e-284 979.9 510 94.5
CARHR148380 Cardamine hirsuta HOM05D005888 ORTHO05D007791 1.8e-282 975.3 510 93.7
A06p41440 Brassica napus HOM05D005888 ORTHO05D007791 6.7e-282 973.4 510 94.1
AL5G16294 Arabidopsis lyrata HOM05D005888 ORTHO05D007791 2.9e-277 958.0 507 92.3
Carub.0005s0545 Capsella rubella HOM05D005888 ORTHO05D007791 2.9e-277 958.0 507 92.5
Thhalv10003965m.g Eutrema salsugineum HOM05D005888 ORTHO05D007791 1.8e-274 948.7 540 87.6
AT3G27180 Arabidopsis thaliana HOM05D005888 ORTHO05D007791 2.3e-274 948.3 507 91.5
BraA06t27070Z Brassica rapa HOM05D005888 ORTHO05D007791 9.7e-273 943.0 510 91.2
BcaC06g33851 Brassica carinata HOM05D005888 ORTHO05D007791 1.8e-271 938.7 505 91.9
Aa31LG2G5450 Aethionema arabicum HOM05D005888 ORTHO05D007791 3.5e-254 881.3 506 85.6
THA.LOC104823976 Tarenaya hassleriana HOM05D005888 ORTHO05D007791 2.3e-234 815.5 510 79.2
Gorai.011G091800 Gossypium raimondii HOM05D005888 ORTHO05D007791 3.6e-211 738.4 504 70.4
Thecc.04G034400 Theobroma cacao HOM05D005888 ORTHO05D007791 4.4e-209 731.5 510 70.2
Ciclev10014957m.g Citrus clementina HOM05D005888 ORTHO05D007791 2.9e-208 728.8 499 71.3
FvH4_6g53250 Fragaria vesca HOM05D005888 ORTHO05D007791 2.9e-208 728.8 503 70.4
TWI36G1634 Tripterygium wilfordii HOM05D005888 ORTHO05D007791 6.4e-208 727.6 505 71.1
RcHm_v2.0_Chr2g0175381 Rosa chinensis HOM05D005888 ORTHO05D007791 8.4e-208 727.2 509 69.5
Gohir.D10G084400 Gossypium hirsutum HOM05D005888 ORTHO05D007791 3.2e-207 725.3 504 69.8
MD09G1012500 Malus domestica HOM05D005888 ORTHO05D007791 3.2e-207 725.3 506 70.0
Gohir.A10G159400 Gossypium hirsutum HOM05D005888 ORTHO05D007791 7.1e-207 724.2 504 69.6
QL02p071659 Quercus lobata HOM05D005888 ORTHO05D007791 7.1e-207 724.2 495 70.9
CiPaw.03G054300 Carya illinoinensis HOM05D005888 ORTHO05D007791 1.7e-205 719.5 510 70.2
Dinv33348 Davidia involucrata HOM05D005888 ORTHO05D007791 5.1e-205 718.0 465 73.3
Prupe.3G304500 Prunus persica HOM05D005888 ORTHO05D007791 5.1e-205 718.0 505 68.9
MELO3C014874.2 Cucumis melo HOM05D005888 ORTHO05D007791 6.6e-205 717.6 506 68.6
Actinidia05914 Actinidia chinensis HOM05D005888 ORTHO05D007791 8.7e-205 717.2 491 70.7
Manes.15G159600 Manihot esculenta HOM05D005888 ORTHO05D007791 7.3e-204 714.1 506 69.6
CsaV3_3G027150 Cucumis sativus L. HOM05D005888 ORTHO05D007791 9.6e-204 713.8 506 68.2
Lalb_Chr22g0360441 Lupinus albus HOM05D005888 ORTHO05D007791 6.2e-203 711.1 471 70.7
Atru.chr6.2546 Acer truncatum HOM05D005888 ORTHO05D007791 5.3e-202 708.0 459 73.4
Atru.chr6.2554 Acer truncatum HOM05D005888 ORTHO05D007791 5.3e-202 708.0 459 73.6
Cpa.g.sc171.27 Carica papaya HOM05D005888 ORTHO05D007791 1.2e-201 706.8 501 71.1
Potri.001G331900 Populus trichocarpa HOM05D005888 ORTHO05D007791 1.2e-201 706.8 499 69.1
Phvul.001G094800 Phaseolus vulgaris HOM05D005888 ORTHO05D007791 1.5e-201 706.4 499 68.3
PGR083G0577 Punica granatum HOM05D005888 ORTHO05D007791 2.0e-201 706.1 503 69.0
Eucgr.J02331 Eucalyptus grandis HOM05D005888 ORTHO05D007791 3.4e-201 705.3 495 69.5
GSVIVG01033109001 Vitis vinifera HOM05D005888 ORTHO05D007791 9.9e-201 703.7 484 70.9
Lj1g0026523 Lotus japonicus HOM05D005888 ORTHO05D007791 1.7e-200 703.0 459 72.3
arahy.Tifrunner.gnm1.ann1.BEVL6N Arachis hypogaea HOM05D005888 ORTHO05D007791 3.8e-200 701.8 485 69.9
Solyc03g005010.4 Solanum lycopersicum HOM05D005888 ORTHO05D007791 4.9e-200 701.4 491 69.0
Sopen03g001020 Solanum pennellii HOM05D005888 ORTHO05D007791 1.9e-199 699.5 491 68.8
Nn4g22357 Nelumbo nucifera HOM05D005888 ORTHO05D007791 4.2e-199 698.4 488 68.6
Sc03g0006610 Simmondsia chinensis HOM05D005888 ORTHO05D007791 4.2e-199 698.4 520 66.7
CANSAT64G1138 Cannabis sativa HOM05D005888 ORTHO05D007791 9.3e-199 697.2 459 70.8
arahy.Tifrunner.gnm1.ann1.269ICV Arachis hypogaea HOM05D005888 ORTHO05D007791 1.2e-198 696.8 472 70.6
Medtr7g029350 Medicago truncatula HOM05D005888 ORTHO05D007791 1.6e-198 696.4 484 69.0
Sed0023439 Sechium edule HOM05D005888 ORTHO05D007791 4.6e-198 694.9 452 72.1
Glyma.16G057700 Glycine max HOM05D005888 ORTHO05D007791 6.0e-198 694.5 483 68.9
Lju41C52T2 Lonicera japonica HOM05D005888 ORTHO05D007791 1.5e-196 689.9 476 68.9
Aqoxy5G03414 Aquilegia oxysepala HOM05D005888 ORTHO05D007791 2.5e-196 689.1 468 70.5
Hma1.2p1_0279F.1_g112650 Hydrangea macrophylla HOM05D005888 ORTHO05D007791 3.3e-196 688.7 439 72.7
PGSC0003DMG400013424 Solanum tuberosum HOM05D005888 ORTHO05D007791 9.6e-196 687.2 463 70.2
ClCG05G013410 Citrullus lanatus HOM05D005888 ORTHO05D007791 1.6e-195 686.4 513 66.5
DCAR_021782 Daucus carota HOM05D005888 ORTHO05D007791 1.1e-194 683.7 456 69.7
PSO063G1934 Papaver somniferum HOM05D005888 ORTHO05D007791 5.3e-194 681.4 454 70.7
ECA238G1812 Erigeron canadensis HOM05D005888 ORTHO05D001226 6.9e-194 681.0 481 67.4
FAN05G3931 Fragaria x ananassa HOM05D005888 ORTHO05D007791 6.9e-194 681.0 513 66.5
PSO782G2046 Papaver somniferum HOM05D005888 ORTHO05D007791 6.9e-194 681.0 463 70.0
MSTRG.15566 Avicennia marina HOM05D005888 ORTHO05D007791 1.7e-192 676.4 489 67.1
TPR.G38314 Trifolium pratense HOM05D005888 ORTHO05D007791 6.0e-190 667.9 464 69.4
Lsat_1_v5_gn_2_94140 Lactuca sativa HOM05D005888 ORTHO05D007791 1.3e-189 666.8 471 67.5
Rhsim10G0007200 Rhododendron simsii HOM05D005888 ORTHO05D007791 1.3e-189 666.8 496 65.5
Cc07_g00720 Coffea canephora HOM05D005888 ORTHO05D007791 3.9e-189 665.2 506 64.0
FAN02G1540 Fragaria x ananassa HOM05D005888 ORTHO05D007791 1.5e-188 663.3 519 64.0
SalBow7G4553 Salvia bowleyana HOM05D005888 ORTHO05D007791 4.3e-188 661.8 474 67.7
HanXRQChr14g0450691 Helianthus annuus HOM05D005888 ORTHO05D007791 5.7e-188 661.4 499 65.7
Sabra16G0212900 Salix brachista HOM05D005888 ORTHO05D007791 8.2e-187 657.5 508 65.0
Nitab4.5_0000559g0440 Nicotiana tabacum HOM05D005888 ORTHO05D007791 9.0e-186 654.1 501 64.3
Cfa007240 Carpinus fangiana HOM05D005888 ORTHO05D007791 5.8e-185 651.4 502 64.5
Migut.K01458 Erythranthe guttata HOM05D005888 ORTHO05D007791 5.8e-185 651.4 476 66.6
EL10Ac5g11325 Beta vulgaris HOM05D005888 ORTHO05D007791 1.4e-183 646.7 460 67.2
ATR0561G016 Amborella trichopoda HOM05D005888 ORTHO05D007791 3.2e-183 645.6 471 65.6
FAN14G3555 Fragaria x ananassa HOM05D005888 ORTHO05D007791 7.4e-180 634.4 505 63.2
COL.COLO4_17186 Corchorus olitorius HOM05D005888 ORTHO05D007791 1.1e-178 630.6 432 69.7
vmacro05950 Vaccinium macrocarpon HOM05D005888 ORTHO05D007791 4.1e-178 628.6 485 62.9
Peaxi162Scf00700g00115 Petunia axillaris HOM05D005888 ORTHO05D007791 1.7e-176 623.2 452 67.7
Oeu011755.2 Olea europaea HOM05D005888 ORTHO05D007791 2.9e-176 622.5 481 64.2
Zm00001eb364480 Zea mays HOM05D005888 ORTHO05D007791 2.5e-175 619.4 482 61.2
AUR62034780 Chenopodium quinoa HOM05D005888 ORTHO05D007791 9.4e-175 617.5 463 64.1
Psat3g164600 Pisum sativum HOM05D005888 ORTHO05D007791 3.0e-173 612.5 415 70.8
HPP92_006968 Vanilla planifolia HOM05D005888 ORTHO05D007791 1.3e-171 607.1 444 64.2
CDE05G3258 Ceratophyllum demersum HOM05D005888 ORTHO05D007791 2.1e-166 589.7 487 59.3
SGA_v2.0_scaffold47G17585 Striga asiatica HOM05D005888 ORTHO05D000781 1.5e-164 583.6 418 66.0
Duzib187G0894 Durio zibethinus HOM05D005888 ORTHO05D007791 1.7e-163 580.1 504 58.9
Nitab4.5_0005161g0030 Nicotiana tabacum HOM05D005888 ORTHO05D007791 3.5e-161 572.4 489 59.7
Mapoly0035s0136 Marchantia polymorpha HOM05D005888 ORTHO05D007791 3.1e-146 522.7 477 53.9
Pp3c10_19430 Physcomitrium patens HOM05D005888 ORTHO05D007791 1.0e-141 507.7 467 51.8
FAN05G4989 Fragaria x ananassa HOM05D005888 ORTHO05D007791 4.9e-139 498.8 368 68.8
Haze_14860 Corylus avellana HOM05D005888 ORTHO05D007791 5.4e-138 495.4 465 56.3
CAN.G1751.4 Capsicum annuum HOM05D005888 ORTHO05D007791 3.8e-136 489.2 339 70.5
Hma1.2p1_0279F.1_g112640 Hydrangea macrophylla HOM05D005888 ORTHO05D007791 4.0e-133 479.2 314 72.6
TAR374G0091 Trochodendron aralioides HOM05D005888 ORTHO05D007791 5.7e-132 475.3 323 73.1
SMO364G0044 Selaginella moellendorffii HOM05D005888 ORTHO05D007791 2.4e-130 469.9 445 49.9
Ca_11801_v3 Cicer arietinum L. HOM05D005888 ORTHO05D007791 7.3e-127 458.4 341 68.0
AUR62009505 Chenopodium quinoa HOM05D005888 ORTHO05D007791 2.0e-121 440.3 388 56.2
BcaC06g31013 Brassica carinata HOM05D005888 ORTHO05D007791 4.3e-119 432.6 229 94.8
Os01g0920300 Oryza sativa ssp. japonica HOM05D005888 ORTHO05D007791 4.1e-114 416.0 320 61.9
AagrBONN_evm.TU.Sc2ySwM_344.2002 Anthoceros agrestis HOM05D005888 ORTHO05D007791 2.7e-113 413.3 416 48.6
Actinidia36191 Actinidia chinensis HOM05D005888 ORTHO05D007791 3.1e-109 399.8 277 71.1
CBR_g38076 Chara braunii HOM05D005888 ORTHO05D007791 2.4e-101 373.6 359 49.0
VMungo1383G0859 Vigna mungo HOM05D005888 ORTHO05D007791 1.3e-99 367.9 298 64.8
AUR62044347 Chenopodium quinoa HOM05D005888 ORTHO05D007791 3.2e-90 336.7 389 47.6
VMungo1383G0786 Vigna mungo HOM05D005888 ORTHO05D007791 1.6e-86 324.3 236 63.1
Atru.chr6.2542 Acer truncatum HOM05D005888 ORTHO05D007791 9.0e-85 318.5 254 62.2
Ah.11g046710 Amaranthus hybridus HOM05D005888 ORTHO05D007791 5.6e-79 299.3 508 37.6
CSS0026485 Camellia sinensis var. sinensis HOM05D005888 ORTHO05D007791 1.8e-72 277.7 230 60.0
MCO16G034 Micromonas commoda HOM05D005888 ORTHO05D007791 7.4e-63 245.7 521 32.6
FAN09G0079 Fragaria x ananassa HOM05D000071 ORTHO05D007791 4.2e-50 203.4 127 68.5
BcaNung06416 Brassica carinata HOM05D005888 ORTHO05D007791 8.0e-41 172.6 90 92.2
Ca_27688_v3 Cicer arietinum L. HOM05D005888 ORTHO05D007791 2.0e-39 167.9 125 60.0
PRCOL_00001844 Prasinoderma coloniale HOM05D005888 ORTHO05D007791 6.5e-35 152.9 448 29.0
Atru.chr6.2543 Acer truncatum HOM05D005888 ORTHO05D007791 4.1e-29 133.7 87 72.4
Cre13.g578012 Chlamydomonas reinhardtii HOM05D005888 ORTHO05D007791 1.8e-24 118.2 378 25.9
RcHm_v2.0_Chr7g0179331 Rosa chinensis HOM05D005888 ORTHO05D007791 1.8e-24 118.2 93 60.2
SEGI_20285 Sequoiadendron giganteum HOM05D005888 ORTHO05D007791 4.5e-20 103.6 73 64.4
Pp3s32_330 Physcomitrium patens HOM05D005216 ORTHO05D006453 5.0e-19 100.1 366 26.8
GSVIVG01006690001 Vitis vinifera HOM05D005888 ORTHO05D007791 1.6e-17 95.1 80 63.8
GSVIVG01033112001 Vitis vinifera HOM05D005888 ORTHO05D007791 3.0e-16 90.9 65 61.5
Cre13.g578201 Chlamydomonas reinhardtii HOM05D005888 ORTHO05D007791 3.4e-15 87.4 175 29.7
MD17G1013100 Malus domestica HOM05D005888 ORTHO05D007791 4.6e-12 77.0 80 50.0
GSVIVG01033118001 Vitis vinifera HOM05D005888 ORTHO05D007791 3.3e-10 70.9 79 49.4
RcHm_v2.0_Chr7g0239971 Rosa chinensis HOM05D005888 ORTHO05D007791 4.3e-10 70.5 38 73.7
GSVIVG01006789001 Vitis vinifera HOM05D005888 ORTHO05D007791 7.3e-10 69.7 76 51.3
arahy.Tifrunner.gnm1.ann1.412K95 Arachis hypogaea HOM05D005216 ORTHO05D006453 1.7e-06 58.5 294 24.8
arahy.Tifrunner.gnm1.ann1.CL3NUC Arachis hypogaea HOM05D005216 ORTHO05D006453 8.3e-06 56.2 294 24.8


User provided reference genes

Program Settings