Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g16180 Schrenkiella parvula HOM05D001420 ORTHO05D009292 7.2e-93 344.0 182 100.0
BcaB04g19424 Brassica carinata HOM05D001420 ORTHO05D009292 1.6e-87 326.2 182 93.4
Thhalv10004992m.g Eutrema salsugineum HOM05D001420 ORTHO05D009292 6.5e-86 320.9 182 91.8
BcaC04g23914 Brassica carinata HOM05D001420 ORTHO05D009292 8.5e-86 320.5 182 92.3
A09p03260 Brassica napus HOM05D001420 ORTHO05D009292 8.5e-86 320.5 183 93.4
BraA09t35964Z Brassica rapa HOM05D001420 ORTHO05D009292 8.5e-86 320.5 183 93.4
AL5G16160 Arabidopsis lyrata HOM05D001420 ORTHO05D009292 1.1e-85 320.1 180 93.3
AT3G27050 Arabidopsis thaliana HOM05D001420 ORTHO05D009292 4.2e-85 318.2 181 92.3
BolC9t53267H Brassica oleracea HOM05D001420 ORTHO05D009292 7.2e-85 317.4 183 92.3
C09p03460 Brassica napus HOM05D001420 ORTHO05D009292 2.1e-84 315.8 183 91.8
Carub.0005s0529 Capsella rubella HOM05D001420 ORTHO05D009292 9.7e-82 307.0 181 88.4
CARHR148270 Cardamine hirsuta HOM05D001420 ORTHO05D009292 2.8e-81 305.4 182 87.4
Aa31LG2G5540 Aethionema arabicum HOM05D001420 ORTHO05D009292 8.5e-78 293.9 182 84.1
THA.LOC104825624 Tarenaya hassleriana HOM05D001420 ORTHO05D009292 2.4e-72 275.8 177 77.4
Thecc.04G036700 Theobroma cacao HOM05D001420 ORTHO05D009292 2.3e-62 242.7 180 68.3
Prupe.3G306700 Prunus persica HOM05D001420 ORTHO05D009292 3.8e-62 241.9 177 69.5
Haze_14879 Corylus avellana HOM05D001420 ORTHO05D009292 8.6e-62 240.7 175 69.7
Glyma.19G091500 Glycine max HOM05D001420 ORTHO05D009292 8.6e-62 240.7 178 69.7
MD09G1010400 Malus domestica HOM05D001420 ORTHO05D009292 1.9e-61 239.6 174 69.5
Nitab4.5_0005161g0070 Nicotiana tabacum HOM05D001420 ORTHO05D009292 1.9e-61 239.6 179 68.2
GSVIVG01033089001 Vitis vinifera HOM05D001420 ORTHO05D009292 1.9e-61 239.6 178 69.1
Potri.001G329600 Populus trichocarpa HOM05D001420 ORTHO05D009292 2.5e-61 239.2 179 70.4
vmacro18348 Vaccinium macrocarpon HOM05D001420 ORTHO05D009292 2.5e-61 239.2 178 67.4
Dinv25658 Davidia involucrata HOM05D001420 ORTHO05D002488 3.3e-61 238.8 180 67.8
Lj1g0001542 Lotus japonicus HOM05D001420 ORTHO05D009292 5.6e-61 238.0 181 66.9
Cpa.g.sc171.11 Carica papaya HOM05D001420 ORTHO05D009292 1.2e-60 236.9 180 67.2
arahy.Tifrunner.gnm1.ann1.WDB61R Arachis hypogaea HOM05D001420 ORTHO05D009292 4.7e-60 235.0 182 67.0
RcHm_v2.0_Chr2g0175601 Rosa chinensis HOM05D001420 ORTHO05D009292 4.7e-60 235.0 180 67.2
Medtr7g029105 Medicago truncatula HOM05D001420 ORTHO05D009292 8.0e-60 234.2 174 68.4
MSTRG.3074 Avicennia marina HOM05D001420 ORTHO05D009292 3.0e-59 232.3 176 67.0
PGR142G3591 Punica granatum HOM05D001420 ORTHO05D009292 3.0e-59 232.3 178 68.0
CSS0004965 Camellia sinensis var. sinensis HOM05D001420 ORTHO05D009292 4.0e-59 231.9 178 66.9
MBI11_g44423_MAGBIO Magnolia biondii HOM05D001420 ORTHO05D002488 4.0e-59 231.9 175 68.0
Oeu035224.1 Olea europaea HOM05D001420 ORTHO05D009292 5.2e-59 231.5 178 68.0
Duzib147G1300 Durio zibethinus HOM05D001420 ORTHO05D009292 6.8e-59 231.1 178 65.7
TPR.G38286 Trifolium pratense HOM05D001420 ORTHO05D009292 6.8e-59 231.1 177 66.1
Migut.F00060 Erythranthe guttata HOM05D001420 ORTHO05D009292 1.2e-58 230.3 174 64.9
FvH4_6g53561 Fragaria vesca HOM05D001420 ORTHO05D009292 1.5e-58 229.9 177 66.1
Eucgr.I01645 Eucalyptus grandis HOM05D001420 ORTHO05D009292 2.0e-58 229.6 181 66.9
Psat3g174720 Pisum sativum HOM05D001420 ORTHO05D002488 2.0e-58 229.6 173 67.6
Sc15g0002740 Simmondsia chinensis HOM05D001420 ORTHO05D009292 2.0e-58 229.6 169 69.8
TWI60G0015 Tripterygium wilfordii HOM05D001420 ORTHO05D009292 2.0e-58 229.6 181 65.2
Glyma.16G056200 Glycine max HOM05D001420 ORTHO05D009292 2.6e-58 229.2 174 67.2
Actinidia04437 Actinidia chinensis HOM05D001420 ORTHO05D009292 3.4e-58 228.8 171 67.8
Gohir.A09G036000 Gossypium hirsutum HOM05D001420 ORTHO05D009292 3.4e-58 228.8 175 66.9
Nitab4.5_0000559g0390 Nicotiana tabacum HOM05D001420 ORTHO05D009292 5.7e-58 228.0 186 64.5
Gorai.006G042300 Gossypium raimondii HOM05D001420 ORTHO05D009292 7.5e-58 227.6 177 65.0
SGA_v2.0_scaffold44G16915 Striga asiatica HOM05D001420 ORTHO05D009292 9.8e-58 227.3 176 64.8
FAN09G1657 Fragaria x ananassa HOM05D001420 ORTHO05D009292 1.3e-57 226.9 177 64.4
Cc07_g00860 Coffea canephora HOM05D001420 ORTHO05D009292 2.9e-57 225.7 174 67.2
CANSAT64G1297 Cannabis sativa HOM05D001420 ORTHO05D009292 8.3e-57 224.2 174 66.1
Manes.15G161200 Manihot esculenta HOM05D001420 ORTHO05D009292 8.3e-57 224.2 175 67.4
VMungo1383G3091 Vigna mungo HOM05D001420 ORTHO05D009292 8.3e-57 224.2 176 65.3
Hma1.2p1_1278F.1_g272270 Hydrangea macrophylla HOM05D001420 ORTHO05D009292 1.1e-56 223.8 181 64.1
Lalb_Chr22g0360361 Lupinus albus HOM05D001420 ORTHO05D009292 1.1e-56 223.8 173 65.9
QL02p071311 Quercus lobata HOM05D001420 ORTHO05D009292 1.4e-56 223.4 181 63.5
CSS0009369 Camellia sinensis var. sinensis HOM05D001420 ORTHO05D009292 2.4e-56 222.6 192 62.0
AUR62003518 Chenopodium quinoa HOM05D001420 ORTHO05D009292 3.2e-56 222.2 173 65.3
AUR62017830 Chenopodium quinoa HOM05D001420 ORTHO05D009292 3.2e-56 222.2 173 66.5
TAR622G0082 Trochodendron aralioides HOM05D001420 ORTHO05D009292 1.6e-55 219.9 170 65.9
FAN05G4256 Fragaria x ananassa HOM05D001420 ORTHO05D009292 7.8e-55 217.6 189 59.8
FAN14G1551 Fragaria x ananassa HOM05D001420 ORTHO05D000136 1.0e-54 217.2 167 65.9
Nn3g16459 Nelumbo nucifera HOM05D001420 ORTHO05D009292 5.0e-54 214.9 174 63.2
Rhsim08G0042700 Rhododendron simsii HOM05D001420 ORTHO05D009292 7.3e-53 211.1 171 63.7
PGSC0003DMG400022915 Solanum tuberosum HOM05D001420 ORTHO05D009292 4.7e-52 208.4 174 61.5
PSO478G4377 Papaver somniferum HOM05D001420 ORTHO05D009292 6.2e-52 208.0 170 62.4
Cfa007225 Carpinus fangiana HOM05D001420 ORTHO05D009292 2.3e-51 206.1 143 72.0
ATR0561G272 Amborella trichopoda HOM05D001420 ORTHO05D009292 4.0e-51 205.3 172 59.3
Haze_14955 Corylus avellana HOM05D001420 ORTHO05D009292 8.9e-51 204.1 141 73.0
HPP92_009721 Vanilla planifolia HOM05D001420 ORTHO05D009292 1.5e-50 203.4 170 64.1
Aqoxy3G01555 Aquilegia oxysepala HOM05D001420 ORTHO05D009292 2.0e-50 203.0 170 62.4
unitig_60.g25408 Utricularia gibba HOM05D001420 ORTHO05D009292 2.0e-50 203.0 179 59.8
Sabra16G0211000 Salix brachista HOM05D001420 ORTHO05D009292 2.6e-50 202.6 254 49.2
HanXRQChr17g0550091 Helianthus annuus HOM05D001420 ORTHO05D009292 7.5e-50 201.1 160 64.4
CDE05G2056 Ceratophyllum demersum HOM05D001420 ORTHO05D009292 3.7e-49 198.7 170 58.2
SalBow4G1795 Salvia bowleyana HOM05D001420 ORTHO05D009292 3.7e-49 198.7 175 58.3
ClCG05G013550 Citrullus lanatus HOM05D001420 ORTHO05D009292 4.9e-49 198.4 166 64.5
CsaV3_3G026980 Cucumis sativus L. HOM05D001420 ORTHO05D009292 1.1e-48 197.2 171 62.0
PSO017G5378 Papaver somniferum HOM05D001420 ORTHO05D009292 1.1e-48 197.2 180 58.3
Lsat_1_v5_gn_0_26060 Lactuca sativa HOM05D001420 ORTHO05D009292 1.6e-47 193.4 160 59.4
Atru.chr6.2574 Acer truncatum HOM05D001420 ORTHO05D009292 3.5e-47 192.2 146 67.1
Sed0020252 Sechium edule HOM05D001420 ORTHO05D009292 3.0e-46 189.1 168 61.3
Gohir.D09G037000 Gossypium hirsutum HOM05D001420 ORTHO05D009292 6.6e-46 188.0 143 65.0
MBI11_g05328_MAGBIO Magnolia biondii HOM05D001420 ORTHO05D002488 4.3e-45 185.3 149 66.4
Peaxi162Scf00700g00030 Petunia axillaris HOM05D001420 ORTHO05D009292 4.3e-45 185.3 140 67.1
Phvul.001G093200 Phaseolus vulgaris HOM05D001420 ORTHO05D009292 5.6e-45 184.9 178 56.2
SEGI_21368 Sequoiadendron giganteum HOM05D001420 ORTHO05D009292 5.6e-45 184.9 163 55.8
ECA246G1005 Erigeron canadensis HOM05D001420 ORTHO05D002488 9.5e-45 184.1 161 57.1
SalBow4G0299 Salvia bowleyana HOM05D001420 ORTHO05D009292 2.8e-44 182.6 206 49.5
Ciclev10017089m.g Citrus clementina HOM05D001420 ORTHO05D009292 2.3e-43 179.5 140 66.4
RcHm_v2.0_Chr2g0175681 Rosa chinensis HOM05D001420 ORTHO05D009292 3.1e-43 179.1 138 68.1
Os11g0488600 Oryza sativa ssp. japonica HOM05D001420 ORTHO05D009292 1.3e-41 173.7 175 56.0
Dinv33335 Davidia involucrata HOM05D001420 ORTHO05D009292 6.4e-41 171.4 121 69.4
MELO3C014890.2 Cucumis melo HOM05D001420 ORTHO05D009292 3.2e-40 169.1 146 62.3
Zm00001eb112760 Zea mays HOM05D001420 ORTHO05D009292 4.6e-39 165.2 199 48.7
AagrBONN_evm.TU.Sc2ySwM_228.3079 Anthoceros agrestis HOM05D001420 ORTHO05D009292 1.7e-38 163.3 171 47.4
Pp3c1_27230 Physcomitrium patens HOM05D001420 ORTHO05D009292 3.0e-38 162.5 161 50.9
Pp3c14_4200 Physcomitrium patens HOM05D001420 ORTHO05D009292 5.6e-37 158.3 169 46.7
Ah.03g147520 Amaranthus hybridus HOM05D001420 ORTHO05D009292 8.1e-36 154.5 140 60.0
SMO119G0238 Selaginella moellendorffii HOM05D001420 ORTHO05D009292 3.1e-35 152.5 141 55.3
Lj7C610G7 Lonicera japonica HOM05D001420 ORTHO05D009292 2.6e-34 149.4 116 64.7
MD16G1254400 Malus domestica HOM05D001420 ORTHO05D009292 3.8e-33 145.6 123 62.6
CDE05G0537 Ceratophyllum demersum HOM05D001420 ORTHO05D009292 2.1e-28 129.8 117 55.6
CBR_g762 Chara braunii HOM05D001420 ORTHO05D009292 4.0e-27 125.6 163 41.1
DCAR_021795 Daucus carota HOM05D001420 ORTHO05D009292 6.4e-17 91.7 88 55.7
CiPaw.03G055800 Carya illinoinensis HOM05D001420 ORTHO05D002488 9.3e-16 87.8 59 72.9
FAN02G0503 Fragaria x ananassa HOM05D001420 ORTHO05D009292 8.7e-14 81.3 70 60.0
Hund12739 Selenicereus undatus HOM05D001420 ORTHO05D009292 2.4e-11 73.2 52 71.2
Nitab4.5_0000525g0030 Nicotiana tabacum HOM05D001420 ORTHO05D009292 1.3e-09 67.4 39 79.5
Cre01.g049050 Chlamydomonas reinhardtii HOM05D001420 ORTHO05D009292 1.7e-09 67.0 148 28.4


User provided reference genes

Program Settings