Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g16080 Schrenkiella parvula HOM05D005105 ORTHO05D006244 0.0e+00 1117.4 555 100.0
Thhalv10003939m.g Eutrema salsugineum HOM05D005105 ORTHO05D006244 1.6e-297 1025.4 555 90.5
AT3G26950 Arabidopsis thaliana HOM05D005105 ORTHO05D006244 2.1e-292 1008.4 555 88.6
Carub.0005s0514 Capsella rubella HOM05D005105 ORTHO05D006244 1.3e-291 1005.7 556 89.0
AL5G15980 Arabidopsis lyrata HOM05D005105 ORTHO05D006244 2.3e-291 1005.0 555 87.9
BcaC06g31032 Brassica carinata HOM05D005105 ORTHO05D006244 1.1e-288 996.1 558 88.4
C07p36060 Brassica napus HOM05D005105 ORTHO05D006244 6.4e-286 986.9 572 85.8
BraA06t27085Z Brassica rapa HOM05D005105 ORTHO05D006244 7.1e-285 983.4 581 84.5
A06p41600 Brassica napus HOM05D005105 ORTHO05D006244 1.3e-281 972.6 556 86.3
BcaC06g33873 Brassica carinata HOM05D005105 ORTHO05D006244 8.1e-281 969.9 556 86.3
BolC7t44120H Brassica oleracea HOM05D005105 ORTHO05D006244 4.0e-280 967.6 556 86.3
THA.LOC104825638 Tarenaya hassleriana HOM05D005105 ORTHO05D006244 7.4e-250 867.1 555 76.2
Aa31LG2G5630 Aethionema arabicum HOM05D005105 ORTHO05D006244 1.1e-245 853.2 585 74.2
THA.LOC104805319 Tarenaya hassleriana HOM05D005105 ORTHO05D006244 9.1e-232 807.0 571 71.6
CARHR148130 Cardamine hirsuta HOM05D005105 ORTHO05D006244 2.5e-213 745.7 386 91.5
Thecc.04G041900 Theobroma cacao HOM05D005105 ORTHO05D006244 1.9e-208 729.6 559 64.8
Manes.04G087600 Manihot esculenta HOM05D005105 ORTHO05D006244 1.3e-206 723.4 561 64.5
QL02p070577 Quercus lobata HOM05D005105 ORTHO05D006244 2.3e-206 722.6 565 63.0
Prupe.3G310100 Prunus persica HOM05D005105 ORTHO05D006244 8.6e-206 720.7 555 63.4
Duzib147G0369 Durio zibethinus HOM05D005105 ORTHO05D006244 1.2e-204 716.8 556 63.7
Ciclev10014761m.g Citrus clementina HOM05D005105 ORTHO05D006244 1.6e-204 716.5 567 63.1
PGR142G1816 Punica granatum HOM05D005105 ORTHO05D006244 1.5e-202 709.9 558 61.6
FAN09G0463 Fragaria x ananassa HOM05D005105 ORTHO05D006244 5.8e-202 708.0 571 60.9
FAN02G1943 Fragaria x ananassa HOM05D005105 ORTHO05D006244 9.9e-202 707.2 571 60.6
Potri.001G325500 Populus trichocarpa HOM05D005105 ORTHO05D006244 2.2e-201 706.1 553 63.3
RcHm_v2.0_Chr2g0176111 Rosa chinensis HOM05D005105 ORTHO05D006244 3.7e-201 705.3 577 60.3
FAN14G3030 Fragaria x ananassa HOM05D005105 ORTHO05D006244 6.4e-201 704.5 571 61.1
Lj1g0026609 Lotus japonicus HOM05D005105 ORTHO05D006244 8.3e-201 704.1 553 63.3
MD09G1007000 Malus domestica HOM05D005105 ORTHO05D006244 1.4e-200 703.4 576 61.5
Glyma.16G052500 Glycine max HOM05D005105 ORTHO05D006244 7.1e-200 701.0 554 63.2
Gorai.006G044700 Gossypium raimondii HOM05D005105 ORTHO05D006244 6.6e-198 694.5 586 60.2
CiPaw.03G004800 Carya illinoinensis HOM05D005105 ORTHO05D006244 1.1e-197 693.7 484 68.4
FAN05G2765 Fragaria x ananassa HOM05D005105 ORTHO05D006244 3.3e-197 692.2 587 59.3
TWI60G0613 Tripterygium wilfordii HOM05D005105 ORTHO05D006244 4.3e-197 691.8 551 63.2
Nn3g16360 Nelumbo nucifera HOM05D005105 ORTHO05D006244 7.3e-197 691.0 557 61.4
CsaV3_5G024330 Cucumis sativus L. HOM05D005105 ORTHO05D006244 2.8e-196 689.1 560 61.1
Medtr7g026520 Medicago truncatula HOM05D005105 ORTHO05D006244 6.2e-196 688.0 565 60.9
TWI34G1796 Tripterygium wilfordii HOM05D005105 ORTHO05D006244 1.1e-195 687.2 568 61.3
Cc07_g01060 Coffea canephora HOM05D005105 ORTHO05D006244 1.8e-195 686.4 570 60.0
Gorai.001G274700 Gossypium raimondii HOM05D005105 ORTHO05D006244 1.8e-195 686.4 557 61.8
Sed0022814 Sechium edule HOM05D005105 ORTHO05D006244 3.1e-195 685.6 563 61.1
arahy.Tifrunner.gnm1.ann1.JMV5LB Arachis hypogaea HOM05D005105 ORTHO05D006244 5.2e-195 684.9 585 59.1
CANSAT21G1015 Cannabis sativa HOM05D005105 ORTHO05D006244 5.2e-195 684.9 551 61.0
Haze_14911 Corylus avellana HOM05D005105 ORTHO05D006244 5.2e-195 684.9 539 64.0
Gohir.D07G238700 Gossypium hirsutum HOM05D005105 ORTHO05D006244 5.2e-195 684.9 557 61.8
Gohir.A07G231500 Gossypium hirsutum HOM05D005105 ORTHO05D006244 1.5e-194 683.3 557 61.6
TAR629G0447 Trochodendron aralioides HOM05D005105 ORTHO05D006244 1.5e-194 683.3 562 60.9
Oeu020395.1 Olea europaea HOM05D005105 ORTHO05D006244 3.4e-194 682.2 559 60.3
Lalb_Chr00c40g0412501 Lupinus albus HOM05D005105 ORTHO05D006244 4.4e-194 681.8 561 61.0
Cfa007197 Carpinus fangiana HOM05D005105 ORTHO05D006244 1.7e-193 679.9 567 60.8
arahy.Tifrunner.gnm1.ann1.B1CDD0 Arachis hypogaea HOM05D005105 ORTHO05D006244 6.4e-193 677.9 562 60.3
MELO3C025087.2 Cucumis melo HOM05D005105 ORTHO05D006244 1.4e-192 676.8 584 58.7
ClCG01G008700 Citrullus lanatus HOM05D005105 ORTHO05D006244 4.1e-192 675.2 562 60.3
Nitab4.5_0011381g0040 Nicotiana tabacum HOM05D005105 ORTHO05D006244 5.4e-192 674.9 553 59.7
Solyc02g082210.4 Solanum lycopersicum HOM05D005105 ORTHO05D006244 7.1e-192 674.5 554 59.2
Lj2g0026571 Lotus japonicus HOM05D005105 ORTHO05D006244 9.2e-192 674.1 558 60.4
Psat3g181600 Pisum sativum HOM05D005105 ORTHO05D006244 1.6e-191 673.3 561 60.4
HanXRQChr17g0551611 Helianthus annuus HOM05D005105 ORTHO05D006244 2.1e-191 672.9 558 60.8
Aqoxy5G03244_Aqoxy5G03245 Aquilegia oxysepala HOM05D005105 ORTHO05D006244 2.7e-191 672.5 566 60.4
Ca_07318_v3 Cicer arietinum L. HOM05D005105 ORTHO05D006244 2.7e-191 672.5 558 59.7
Migut.F00035 Erythranthe guttata HOM05D005105 ORTHO05D006244 6.0e-191 671.4 551 59.7
GSVIVG01033038001 Vitis vinifera HOM05D005105 ORTHO05D006244 8.7e-190 667.5 487 65.5
PSO017G6125 Papaver somniferum HOM05D005105 ORTHO05D006244 1.6e-188 663.3 553 60.0
VMungo1383G1917 Vigna mungo HOM05D005105 ORTHO05D006244 2.1e-188 662.9 554 60.3
ECA246G4542 Erigeron canadensis HOM05D005105 ORTHO05D006244 2.8e-188 662.5 553 58.2
Phvul.001G090000 Phaseolus vulgaris HOM05D005105 ORTHO05D006244 1.1e-187 660.6 558 60.6
PSO478G4366 Papaver somniferum HOM05D005105 ORTHO05D006244 2.6e-186 656.0 553 59.3
Lj7A613T64 Lonicera japonica HOM05D005105 ORTHO05D006244 4.4e-186 655.2 599 57.4
Glyma.16G146100 Glycine max HOM05D005105 ORTHO05D006244 8.4e-185 651.0 558 60.4
Sc09g0007730 Simmondsia chinensis HOM05D005105 ORTHO05D006244 1.2e-183 647.1 559 58.0
Rhsim08G0041000 Rhododendron simsii HOM05D005105 ORTHO05D006244 1.3e-182 643.7 556 57.9
SalBow4G0131 Salvia bowleyana HOM05D005105 ORTHO05D006244 1.3e-182 643.7 565 57.2
Atru.chr6.2614 Acer truncatum HOM05D005105 ORTHO05D006244 4.3e-181 638.6 463 65.0
VMungo0464G0185 Vigna mungo HOM05D005105 ORTHO05D006244 7.3e-181 637.9 547 60.0
EL10Ac6g15451 Beta vulgaris HOM05D005105 ORTHO05D006244 8.1e-180 634.4 570 56.7
Lsat_1_v5_gn_0_23961 Lactuca sativa HOM05D005105 ORTHO05D006244 8.1e-180 634.4 554 57.9
ATR0582G106 Amborella trichopoda HOM05D005105 ORTHO05D006244 9.0e-179 630.9 476 63.0
GSVIVG01008594001 Vitis vinifera HOM05D005105 ORTHO05D006244 9.0e-179 630.9 588 55.6
DCAR_015209 Daucus carota HOM05D005105 ORTHO05D006244 7.6e-178 627.9 590 54.7
AUR62003394 Chenopodium quinoa HOM05D005105 ORTHO05D006244 1.3e-177 627.1 586 55.3
Nitab4.5_0011717g0030 Nicotiana tabacum HOM05D005105 ORTHO05D006244 1.6e-175 620.2 552 55.6
Sabra16G0208000 Salix brachista HOM05D005105 ORTHO05D006244 2.3e-174 616.3 537 59.0
AUR62029433 Chenopodium quinoa HOM05D005105 ORTHO05D006244 1.1e-171 607.4 468 62.0
HanXRQChr05g0155591 Helianthus annuus HOM05D005105 ORTHO05D006244 1.1e-171 607.4 484 60.3
vmacro18364 Vaccinium macrocarpon HOM05D005105 ORTHO05D006244 1.4e-171 607.1 618 51.3
vmacro19146 Vaccinium macrocarpon HOM05D005105 ORTHO05D006244 6.9e-171 604.7 551 54.1
Actinidia36228 Actinidia chinensis HOM05D005105 ORTHO05D006244 1.3e-169 600.5 529 57.5
Phvul.004G070700 Phaseolus vulgaris HOM05D005105 ORTHO05D006244 9.3e-168 594.3 558 55.7
CDE06G1277 Ceratophyllum demersum HOM05D005105 ORTHO05D006244 3.3e-165 585.9 481 57.2
DCAR_007509 Daucus carota HOM05D005105 ORTHO05D006244 7.4e-165 584.7 481 58.0
Cpa.g.sc70.110 Carica papaya HOM05D005105 ORTHO05D006244 2.0e-162 576.6 444 66.0
Duzib264G1310 Durio zibethinus HOM05D005105 ORTHO05D006244 2.6e-162 576.2 556 54.0
Os11g0507400 Oryza sativa ssp. japonica HOM05D005105 ORTHO05D006244 1.1e-160 570.9 557 52.1
Gohir.A09G038300 Gossypium hirsutum HOM05D005105 ORTHO05D006244 2.9e-153 546.2 450 62.2
Hma1.2p1_0093F.1_g046930 Hydrangea macrophylla HOM05D005105 ORTHO05D006244 6.1e-151 538.5 389 64.5
FvH4_6g53950 Fragaria vesca HOM05D005105 ORTHO05D006244 1.9e-149 533.5 369 66.4
Dinv33309 Davidia involucrata HOM05D005105 ORTHO05D006244 4.7e-143 512.3 390 62.8
Peaxi162Scf00331g00014 Petunia axillaris HOM05D005105 ORTHO05D006244 2.8e-140 503.1 584 46.9
Atru.chr6.2613 Acer truncatum HOM05D005105 ORTHO05D006244 7.0e-139 498.4 348 66.1
SHI04027 Sapria himalayana HOM05D005105 ORTHO05D006244 2.9e-137 493.0 612 45.4
unitig_0.g1913 Utricularia gibba HOM05D005105 ORTHO05D006244 4.2e-136 489.2 423 58.2
Eucgr.I01623 Eucalyptus grandis HOM05D005105 ORTHO05D006244 1.2e-135 487.6 346 65.3
Lsat_1_v5_gn_5_10960 Lactuca sativa HOM05D005105 ORTHO05D006244 6.1e-135 485.3 481 54.3
MD17G1010700 Malus domestica HOM05D005105 ORTHO05D006244 4.5e-130 469.2 347 64.6
SMO180G0002 Selaginella moellendorffii HOM05D005105 ORTHO05D006244 7.2e-128 461.8 442 49.3
Prupe.3G297400 Prunus persica HOM05D005105 ORTHO05D006244 4.0e-126 456.1 547 47.2
COL.COLO4_13307 Corchorus olitorius HOM05D005105 ORTHO05D006244 6.8e-118 428.7 475 49.3
CSS0048130 Camellia sinensis var. sinensis HOM05D005105 ORTHO05D006244 5.7e-117 425.6 348 57.5
THA.LOC104813335 Tarenaya hassleriana HOM05D005105 ORTHO05D006244 1.3e-113 414.5 249 79.1
Pp3c1_35010 Physcomitrium patens HOM05D005105 ORTHO05D006244 3.3e-112 409.8 487 42.9
CSS0029044 Camellia sinensis var. sinensis HOM05D005105 ORTHO05D006244 5.5e-112 409.1 323 59.8
HPP92_009891 Vanilla planifolia HOM05D005105 ORTHO05D006244 1.4e-110 404.4 326 59.5
ECA246G1012 Erigeron canadensis HOM05D005105 ORTHO05D006244 3.0e-110 403.3 465 47.7
Pp3c21_14570 Physcomitrium patens HOM05D005105 ORTHO05D006244 3.0e-110 403.3 491 43.2
Lj5A92G44 Lonicera japonica HOM05D005105 ORTHO05D006244 1.2e-109 401.4 324 60.2
Glyma.02G065000 Glycine max HOM05D005105 ORTHO05D006244 3.7e-108 396.4 374 56.7
PGSC0003DMG400013660 Solanum tuberosum HOM05D005105 ORTHO05D006244 9.5e-104 381.7 302 59.9
Sopen02g026870 Solanum pennellii HOM05D005105 ORTHO05D006244 1.2e-103 381.3 302 59.9
PSO063G6475 Papaver somniferum HOM05D005105 ORTHO05D006244 2.0e-93 347.4 312 58.3
TWI34G0688 Tripterygium wilfordii HOM05D005105 ORTHO05D006244 6.2e-87 325.9 216 71.8
Dinv23187 Davidia involucrata HOM05D005105 ORTHO05D006244 1.3e-84 318.2 246 61.4
Actinidia18328 Actinidia chinensis HOM05D005105 ORTHO05D006244 4.1e-83 313.2 264 58.3
AagrBONN_evm.TU.Sc2ySwM_340.35 Anthoceros agrestis HOM05D005105 ORTHO05D006244 1.9e-75 287.7 503 34.2
HPP92_009881 Vanilla planifolia HOM05D005105 ORTHO05D006244 2.3e-73 280.8 227 56.8
Actinidia18329 Actinidia chinensis HOM05D005105 ORTHO05D006244 1.3e-65 255.0 241 55.2
FAN05G0264 Fragaria x ananassa HOM05D005105 ORTHO05D006244 9.0e-62 242.3 236 54.7
CDE05G2066 Ceratophyllum demersum HOM05D005105 ORTHO05D006244 7.1e-59 232.6 146 75.3
HPP92_009897 Vanilla planifolia HOM05D005105 ORTHO05D006244 1.6e-55 221.5 176 56.2
Gohir.D09G039750 Gossypium hirsutum HOM05D005105 ORTHO05D006244 8.1e-55 219.2 161 64.6
Actinidia25549 Actinidia chinensis HOM05D005105 ORTHO05D006244 3.0e-49 200.7 134 68.7
CBR_g57654 Chara braunii HOM05D000004 ORTHO05D000002 2.5e-35 154.5 170 42.4
Actinidia05877 Actinidia chinensis HOM05D000139 ORTHO05D000103 9.7e-32 142.5 204 43.1
Atru.chr6.2612 Acer truncatum HOM05D005105 ORTHO05D006244 1.7e-31 141.7 173 50.3
Lj5A92G45 Lonicera japonica HOM05D005105 ORTHO05D006244 1.1e-30 139.0 121 54.5
SGA_v2.0_scaffold253G45172 Striga asiatica HOM05D005105 ORTHO05D006244 3.1e-30 137.5 164 48.2
Actinidia25550 Actinidia chinensis HOM05D005105 ORTHO05D006244 5.9e-29 133.3 150 42.0
Dinv23186 Davidia involucrata HOM05D005105 ORTHO05D006244 7.7e-29 132.9 172 50.0
Gohir.D09G039801 Gossypium hirsutum HOM05D005105 ORTHO05D006244 1.3e-28 132.1 174 48.9
Ah.03g148260 Amaranthus hybridus HOM05D005105 ORTHO05D006244 3.8e-28 130.6 152 48.7
Glyma.19G097001 Glycine max HOM05D005105 ORTHO05D006244 2.1e-26 124.8 89 70.8
Glyma.19G097101 Glycine max HOM05D005105 ORTHO05D006244 1.0e-25 122.5 85 69.4
Dinv33310 Davidia involucrata HOM05D005105 ORTHO05D006244 4.1e-22 110.5 138 47.8
HPP92_009880 Vanilla planifolia HOM05D005105 ORTHO05D006244 2.5e-11 74.7 71 47.9
CSS0040735 Camellia sinensis var. sinensis HOM05D005105 ORTHO05D006244 1.3e-07 62.4 114 41.2
SEGI_15377 Sequoiadendron giganteum HOM05D005105 ORTHO05D006244 6.3e-07 60.1 65 43.1


User provided reference genes

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