Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g15690 Schrenkiella parvula HOM05D006540 ORTHO05D008202 2.7e-181 638.6 354 100.0
AL5G15370 Arabidopsis lyrata HOM05D006540 ORTHO05D008202 7.0e-161 570.9 354 89.3
Thhalv10004491m.g Eutrema salsugineum HOM05D006540 ORTHO05D008202 9.2e-161 570.5 357 87.4
Aa31LG2G5960 Aethionema arabicum HOM05D006540 ORTHO05D008202 1.7e-159 566.2 354 85.6
CARHR147570 Cardamine hirsuta HOM05D006540 ORTHO05D008202 3.0e-159 565.5 357 88.8
A06p41910 Brassica napus HOM05D006540 ORTHO05D008202 6.6e-159 564.3 357 86.8
BraA06t27110Z Brassica rapa HOM05D006540 ORTHO05D008202 6.6e-159 564.3 357 86.8
BcaC06g33900 Brassica carinata HOM05D006540 ORTHO05D008202 8.6e-159 563.9 357 85.2
AT3G26580 Arabidopsis thaliana HOM05D006540 ORTHO05D008202 2.8e-157 558.9 354 87.9
BcaC06g31063 Brassica carinata HOM05D006540 ORTHO05D008202 4.7e-157 558.1 356 87.4
C07p35560 Brassica napus HOM05D006540 ORTHO05D008202 1.1e-156 557.0 357 84.3
BolC7t44080H Brassica oleracea HOM05D006540 ORTHO05D008202 1.1e-156 557.0 357 84.3
Carub.0005s0457 Capsella rubella HOM05D006540 ORTHO05D008202 1.1e-148 530.4 355 85.9
THA.LOC104825662 Tarenaya hassleriana HOM05D006540 ORTHO05D008202 3.6e-125 452.2 354 75.7
CiPaw.05G182700 Carya illinoinensis HOM05D006540 ORTHO05D008202 1.1e-118 430.6 359 67.1
Atru.chr11.2104 Acer truncatum HOM05D006540 ORTHO05D008202 8.1e-117 424.5 360 64.4
Ciclev10032003m.g Citrus clementina HOM05D006540 ORTHO05D008202 4.5e-115 418.7 360 67.5
ClCG05G025710 Citrullus lanatus HOM05D006540 ORTHO05D008202 5.8e-115 418.3 359 64.3
Cpa.g.sc33.16 Carica papaya HOM05D006540 ORTHO05D008202 1.1e-113 414.1 358 67.9
Cfa009208 Carpinus fangiana HOM05D006540 ORTHO05D008202 1.0e-111 407.5 359 64.1
MD16G1102400 Malus domestica HOM05D006540 ORTHO05D008202 1.1e-110 404.1 363 63.6
PGR102G2745 Punica granatum HOM05D006540 ORTHO05D008202 2.5e-110 402.9 361 66.8
Migut.K00595 Erythranthe guttata HOM05D006540 ORTHO05D008202 3.3e-110 402.5 361 60.9
Duzib268G1404 Durio zibethinus HOM05D006540 ORTHO05D008202 4.3e-110 402.1 361 66.5
Manes.13G024900 Manihot esculenta HOM05D006540 ORTHO05D008202 6.2e-109 398.3 356 65.7
Prupe.1G243900 Prunus persica HOM05D006540 ORTHO05D008202 8.2e-109 397.9 363 64.2
MD13G1101900 Malus domestica HOM05D006540 ORTHO05D008202 3.1e-108 396.0 363 62.5
SalBow2G2200 Salvia bowleyana HOM05D006540 ORTHO05D008202 3.1e-108 396.0 366 59.3
Eucgr.B03288 Eucalyptus grandis HOM05D006540 ORTHO05D008202 5.3e-108 395.2 361 67.0
RcHm_v2.0_Chr4g0432921 Rosa chinensis HOM05D006540 ORTHO05D008202 5.8e-107 391.7 362 62.7
MSTRG.568 Avicennia marina HOM05D006540 ORTHO05D008202 1.7e-106 390.2 363 60.1
Gohir.D01G150500 Gossypium hirsutum HOM05D006540 ORTHO05D008202 1.4e-105 387.1 366 65.3
Gorai.002G186600 Gossypium raimondii HOM05D006540 ORTHO05D008202 2.5e-105 386.3 366 65.3
Phvul.003G064400 Phaseolus vulgaris HOM05D006540 ORTHO05D008202 2.3e-103 379.8 354 60.2
Oeu059907.1 Olea europaea HOM05D006540 ORTHO05D008202 4.3e-102 375.6 368 59.0
Thecc.02G259400 Theobroma cacao HOM05D006540 ORTHO05D008202 9.7e-102 374.4 355 65.9
QL03p058139 Quercus lobata HOM05D006540 ORTHO05D008202 1.3e-101 374.0 414 57.0
Dinv24788 Davidia involucrata HOM05D006540 ORTHO05D008202 1.6e-101 373.6 358 62.3
vmacro16198 Vaccinium macrocarpon HOM05D006540 ORTHO05D008202 1.6e-101 373.6 360 58.3
Actinidia37429 Actinidia chinensis HOM05D006540 ORTHO05D008202 8.2e-101 371.3 358 62.3
FAN22G2305 Fragaria x ananassa HOM05D006540 ORTHO05D008202 8.2e-101 371.3 364 59.3
FAN07G1259 Fragaria x ananassa HOM05D006540 ORTHO05D008202 1.4e-100 370.5 364 59.3
Glyma.17G134500 Glycine max HOM05D006540 ORTHO05D008202 1.4e-100 370.5 358 62.8
FAN17G1845 Fragaria x ananassa HOM05D006540 ORTHO05D008202 1.8e-100 370.2 364 59.1
Hma1.2p1_0223F.1_g093990 Hydrangea macrophylla HOM05D006540 ORTHO05D008202 3.1e-100 369.4 384 57.6
FvH4_4g25530 Fragaria vesca HOM05D006540 ORTHO05D008202 6.9e-100 368.2 364 58.8
FAN12G0822 Fragaria x ananassa HOM05D006540 ORTHO05D008202 6.9e-100 368.2 364 58.8
Lj4g0023216 Lotus japonicus HOM05D006540 ORTHO05D008202 1.5e-99 367.1 361 59.8
TAR622G1382 Trochodendron aralioides HOM05D006540 ORTHO05D008202 1.0e-98 364.4 358 57.5
TWI18G0987 Tripterygium wilfordii HOM05D006540 ORTHO05D008202 1.3e-98 364.0 362 59.7
Duzib248G0112 Durio zibethinus HOM05D006540 ORTHO05D008202 3.8e-98 362.5 360 62.8
Rhsim12G0110600 Rhododendron simsii HOM05D006540 ORTHO05D008202 3.8e-98 362.5 362 61.9
arahy.Tifrunner.gnm1.ann1.LD9JWE Arachis hypogaea HOM05D006540 ORTHO05D008202 6.5e-98 361.7 367 61.0
Gohir.A01G159600 Gossypium hirsutum HOM05D006540 ORTHO05D008202 8.5e-98 361.3 358 64.0
arahy.Tifrunner.gnm1.ann1.NX3C69 Arachis hypogaea HOM05D006540 ORTHO05D008202 1.4e-97 360.5 367 60.8
CANSAT35G0572 Cannabis sativa HOM05D006540 ORTHO05D008202 1.2e-96 357.5 360 61.1
Haze_12245 Corylus avellana HOM05D006540 ORTHO05D008202 1.6e-96 357.1 378 56.9
COL.COLO4_24263 Corchorus olitorius HOM05D006540 ORTHO05D008202 2.1e-96 356.7 355 56.6
PGSC0003DMG400018605 Solanum tuberosum HOM05D006540 ORTHO05D008202 2.1e-96 356.7 367 61.9
Lj6A811T79 Lonicera japonica HOM05D006540 ORTHO05D008202 7.9e-96 354.8 368 56.0
Actinidia15092 Actinidia chinensis HOM05D006540 ORTHO05D008202 6.7e-95 351.7 358 60.6
DCAR_024432 Daucus carota HOM05D006540 ORTHO05D008202 2.5e-94 349.7 341 60.1
Cc11_g15700 Coffea canephora HOM05D006540 ORTHO05D008202 1.3e-93 347.4 370 59.2
Sc04g0009450 Simmondsia chinensis HOM05D006540 ORTHO05D008202 3.7e-93 345.9 357 60.2
CSS0000303 Camellia sinensis var. sinensis HOM05D006540 ORTHO05D008202 4.8e-93 345.5 366 60.7
Nitab4.5_0000007g0060 Nicotiana tabacum HOM05D006540 ORTHO05D008202 1.5e-91 340.5 368 56.8
EL10Ac6g13801 Beta vulgaris HOM05D006540 ORTHO05D008202 1.0e-90 337.8 364 55.2
Medtr8g069450 Medicago truncatula HOM05D006540 ORTHO05D008202 2.9e-90 336.3 359 54.6
Peaxi162Scf00128g00138 Petunia axillaris HOM05D006540 ORTHO05D008202 2.9e-90 336.3 366 56.6
Psat4g116680 Pisum sativum HOM05D006540 ORTHO05D008202 5.0e-90 335.5 366 55.5
Potri.013G090000 Populus trichocarpa HOM05D006540 ORTHO05D008202 1.4e-89 334.0 307 63.8
Nitab4.5_0003628g0010 Nicotiana tabacum HOM05D006540 ORTHO05D008202 1.9e-89 333.6 369 56.1
BcaB01g00564 Brassica carinata HOM05D006540 ORTHO05D008202 2.5e-89 333.2 295 67.1
Lsat_1_v5_gn_8_152220 Lactuca sativa HOM05D006540 ORTHO05D008202 2.5e-89 333.2 367 57.8
Sabra13G0070200 Salix brachista HOM05D006540 ORTHO05D008202 1.6e-88 330.5 308 63.3
Ca_22583_v3 Cicer arietinum L. HOM05D006540 ORTHO05D008202 2.7e-88 329.7 355 58.9
CDE09G1037 Ceratophyllum demersum HOM05D006540 ORTHO05D008202 1.0e-87 327.8 357 53.5
CDE02G2769 Ceratophyllum demersum HOM05D006540 ORTHO05D008202 2.3e-87 326.6 356 52.5
Aqoxy3G01202 Aquilegia oxysepala HOM05D006540 ORTHO05D008202 8.8e-87 324.7 369 53.4
Sopen05g008320 Solanum pennellii HOM05D006540 ORTHO05D008202 2.6e-86 323.2 367 54.8
vmacro01127 Vaccinium macrocarpon HOM05D006540 ORTHO05D008202 7.4e-86 321.6 363 53.2
CAN.G832.5 Capsicum annuum HOM05D006540 ORTHO05D008202 9.7e-86 321.2 369 55.6
PSO017G4849 Papaver somniferum HOM05D006540 ORTHO05D008202 9.7e-86 321.2 373 50.4
ECA233G5619 Erigeron canadensis HOM05D006540 ORTHO05D008202 1.3e-85 320.9 250 67.6
HanXRQChr08g0208131 Helianthus annuus HOM05D006540 ORTHO05D008202 2.2e-85 320.1 368 57.1
AUR62024282 Chenopodium quinoa HOM05D006540 ORTHO05D008202 1.1e-84 317.8 359 54.9
Nn4g22628 Nelumbo nucifera HOM05D006540 ORTHO05D008202 1.1e-84 317.8 193 82.4
Lalb_Chr05g0228421 Lupinus albus HOM05D006540 ORTHO05D008202 2.4e-84 316.6 357 52.9
GSVIVG01004073001 Vitis vinifera HOM05D006540 ORTHO05D008202 1.2e-83 314.3 196 77.6
ATR0686G190 Amborella trichopoda HOM05D006540 ORTHO05D008202 7.7e-83 311.6 298 59.1
Ah.03g133040 Amaranthus hybridus HOM05D006540 ORTHO05D008202 2.9e-82 309.7 366 55.5
unitig_21.g20872 Utricularia gibba HOM05D006540 ORTHO05D008202 6.5e-82 308.5 365 50.7
AUR62005459 Chenopodium quinoa HOM05D006540 ORTHO05D008202 1.8e-79 300.4 358 53.1
PSO478G4529 Papaver somniferum HOM05D006540 ORTHO05D008202 6.7e-79 298.5 359 50.1
Rhsim12G0041000 Rhododendron simsii HOM05D006540 ORTHO05D008202 8.2e-77 291.6 437 46.9
MELO3C011955.2 Cucumis melo HOM05D006540 ORTHO05D008202 4.1e-76 289.3 297 60.9
CsaV3_5G031170 Cucumis sativus L. HOM05D006540 ORTHO05D008202 2.6e-75 286.6 297 60.3
VMungo0251G1250 Vigna mungo HOM05D006540 ORTHO05D008202 2.6e-75 286.6 288 58.7
MBI10_g13027_MAGBIO Magnolia biondii HOM05D006540 ORTHO05D008202 1.1e-73 281.2 395 52.2
Sed0005489 Sechium edule HOM05D006540 ORTHO05D008202 4.0e-71 272.7 290 58.6
HPP92_002022 Vanilla planifolia HOM05D006540 ORTHO05D008202 5.9e-67 258.8 200 65.0
TPR.G17765 Trifolium pratense HOM05D006540 ORTHO05D008202 1.3e-66 257.7 354 47.5
TAR374G0845 Trochodendron aralioides HOM05D006540 ORTHO05D008202 1.9e-65 253.8 284 60.9
Os03g0428800 Oryza sativa ssp. japonica HOM05D006540 ORTHO05D008202 2.0e-59 233.8 202 62.4
Zm00001eb096140 Zea mays HOM05D006540 ORTHO05D008202 6.1e-56 222.2 240 56.2
AagrBONN_evm.TU.Sc2ySwM_340.367 Anthoceros agrestis HOM05D006540 ORTHO05D008202 1.8e-47 194.1 247 44.1
Mapoly0037s0067 Marchantia polymorpha HOM05D006540 ORTHO05D008202 1.5e-46 191.0 241 47.3
SEGI_37038 Sequoiadendron giganteum HOM05D006540 ORTHO05D008202 3.2e-44 183.3 173 50.9
SMO347G0417 Selaginella moellendorffii HOM05D006540 ORTHO05D008202 5.4e-44 182.6 236 44.5
Pp3c27_6670 Physcomitrium patens HOM05D006540 ORTHO05D008202 8.6e-42 175.3 193 45.6
BcaC06g33898 Brassica carinata HOM05D006540 ORTHO05D008202 6.0e-35 152.5 82 87.8
Cre12.g528050 Chlamydomonas reinhardtii HOM05D006540 ORTHO05D008202 1.9e-20 104.4 144 38.9
CBR_g8379 Chara braunii HOM05D006540 ORTHO05D008202 1.0e-18 98.6 133 39.1
RcHm_v2.0_Chr5g0067811 Rosa chinensis HOM05D006540 ORTHO05D008202 4.3e-17 93.2 61 78.7
MCO07G599 Micromonas commoda HOM05D006540 ORTHO05D008202 7.3e-17 92.4 136 37.5
Oeu029879.1 Olea europaea HOM05D006540 ORTHO05D008202 3.1e-15 87.0 72 56.9
QL04p066147 Quercus lobata HOM05D006540 ORTHO05D008202 2.0e-14 84.3 52 84.6
PRCOL_00004949 Prasinoderma coloniale HOM05D006540 ORTHO05D008202 4.4e-14 83.2 210 29.5
unitig_744.g24293 Utricularia gibba HOM05D006540 ORTHO05D008202 2.5e-09 67.4 44 63.6
TAR625G0150 Trochodendron aralioides HOM05D006540 ORTHO05D008202 1.4e-07 61.6 105 41.0


User provided reference genes

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