Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g15560 Schrenkiella parvula HOM05D004862 ORTHO05D005841 2.1e-285 984.9 478 100.0
Thhalv10004120m.g Eutrema salsugineum HOM05D004862 ORTHO05D005841 2.3e-276 954.9 478 96.0
AL5G15180 Arabidopsis lyrata HOM05D004862 ORTHO05D005841 1.6e-272 942.2 478 95.2
Carub.0005s0438 Capsella rubella HOM05D004862 ORTHO05D005841 1.1e-270 936.0 478 94.6
AT3G26410 Arabidopsis thaliana HOM05D004862 ORTHO05D005841 3.3e-270 934.5 478 94.4
CARHR147430 Cardamine hirsuta HOM05D004862 ORTHO05D005841 1.8e-268 928.7 480 94.2
BraA02t08465Z Brassica rapa HOM05D004862 ORTHO05D005841 1.3e-266 922.5 478 93.1
C07p35450 Brassica napus HOM05D004862 ORTHO05D005841 6.4e-266 920.2 479 93.5
BolC7t44069H Brassica oleracea HOM05D004862 ORTHO05D005841 6.4e-266 920.2 479 93.5
A06p42030 Brassica napus HOM05D004862 ORTHO05D005841 1.4e-265 919.1 479 93.3
BolC2t11381H Brassica oleracea HOM05D004862 ORTHO05D005841 9.2e-265 916.4 478 92.5
BraA06t27120Z Brassica rapa HOM05D004862 ORTHO05D005841 9.2e-265 916.4 479 93.1
BcaB07g30229 Brassica carinata HOM05D004862 ORTHO05D005841 2.1e-264 915.2 478 92.5
Aa31LG2G6120 Aethionema arabicum HOM05D004862 ORTHO05D005841 6.2e-261 903.7 478 91.0
BcaC03g17366 Brassica carinata HOM05D004862 ORTHO05D005841 1.1e-260 902.9 502 88.0
BcaNung06886 Brassica carinata HOM05D004862 ORTHO05D005841 3.5e-248 861.3 488 88.3
C02p53070 Brassica napus HOM05D004862 ORTHO05D005841 5.1e-247 857.4 502 85.1
THA.LOC104818254 Tarenaya hassleriana HOM05D004862 ORTHO05D005841 2.4e-233 812.0 478 81.8
A02p34570 Brassica napus HOM05D004862 ORTHO05D005841 2.9e-226 788.5 410 93.2
CiPaw.13G145700 Carya illinoinensis HOM05D004862 ORTHO05D005841 2.0e-219 765.8 486 75.1
arahy.Tifrunner.gnm1.ann1.WE1E8S Arachis hypogaea HOM05D004862 ORTHO05D005841 1.7e-218 762.7 484 75.0
Cfa010154 Carpinus fangiana HOM05D004862 ORTHO05D005841 1.7e-218 762.7 480 75.2
arahy.Tifrunner.gnm1.ann1.34Q84K Arachis hypogaea HOM05D004862 ORTHO05D005841 2.9e-218 761.9 484 75.0
Haze_23539 Corylus avellana HOM05D004862 ORTHO05D005841 1.1e-217 760.0 480 75.2
Phvul.002G205600 Phaseolus vulgaris HOM05D004862 ORTHO05D005841 2.5e-217 758.8 484 74.4
Manes.14G165200 Manihot esculenta HOM05D004862 ORTHO05D005841 5.5e-217 757.7 478 75.1
Dinv24234 Davidia involucrata HOM05D004862 ORTHO05D005841 2.1e-216 755.7 488 73.2
Glyma.08G075600 Glycine max HOM05D004862 ORTHO05D005841 4.6e-216 754.6 484 74.0
DCAR_021834 Daucus carota HOM05D004862 ORTHO05D005841 6.1e-216 754.2 483 72.0
Nitab4.5_0005079g0020 Nicotiana tabacum HOM05D004862 ORTHO05D005841 7.9e-216 753.8 491 72.7
Thecc.02G156500 Theobroma cacao HOM05D004862 ORTHO05D005841 7.9e-216 753.8 486 73.3
COL.COLO4_33088 Corchorus olitorius HOM05D004862 ORTHO05D005841 3.0e-215 751.9 486 73.3
Gohir.A01G012300 Gossypium hirsutum HOM05D004862 ORTHO05D005841 3.0e-215 751.9 486 72.8
Lj4g0019477 Lotus japonicus HOM05D004862 ORTHO05D005841 3.0e-215 751.9 485 73.2
MD12G1223100 Malus domestica HOM05D004862 ORTHO05D005841 3.9e-215 751.5 483 73.3
Duzib132G0210 Durio zibethinus HOM05D004862 ORTHO05D005841 5.1e-215 751.1 486 72.8
ClCG09G014610 Citrullus lanatus HOM05D004862 ORTHO05D005841 1.5e-214 749.6 480 74.8
FAN14G5837 Fragaria x ananassa HOM05D004862 ORTHO05D005841 1.5e-214 749.6 479 73.9
Solyc10g047120.2 Solanum lycopersicum HOM05D004862 ORTHO05D005841 1.5e-214 749.6 482 72.4
Lalb_Chr07g0189371 Lupinus albus HOM05D004862 ORTHO05D005841 1.9e-214 749.2 488 74.0
Nitab4.5_0000078g0200 Nicotiana tabacum HOM05D004862 ORTHO05D005841 1.9e-214 749.2 494 72.5
FAN14G4788 Fragaria x ananassa HOM05D004862 ORTHO05D005841 2.5e-214 748.8 479 73.9
Sopen10g017280 Solanum pennellii HOM05D004862 ORTHO05D005841 2.5e-214 748.8 482 72.2
CAN.G1.65 Capsicum annuum HOM05D004862 ORTHO05D005841 3.3e-214 748.4 479 72.2
Prupe.6G329700 Prunus persica HOM05D004862 ORTHO05D005841 3.3e-214 748.4 480 73.3
FAN05G4126 Fragaria x ananassa HOM05D004862 ORTHO05D005841 4.3e-214 748.0 480 74.0
Gorai.002G015300 Gossypium raimondii HOM05D004862 ORTHO05D005841 7.4e-214 747.3 486 72.6
MELO3C012691.2 Cucumis melo HOM05D004862 ORTHO05D005841 1.3e-213 746.5 481 74.4
Sed0027136 Sechium edule HOM05D004862 ORTHO05D005841 1.3e-213 746.5 480 74.6
Ca_29818_v3 Cicer arietinum L. HOM05D004862 ORTHO05D005841 1.6e-213 746.1 484 72.9
Lsat_1_v5_gn_9_117961 Lactuca sativa HOM05D004862 ORTHO05D005841 2.2e-213 745.7 482 72.8
CSS0027197 Camellia sinensis var. sinensis HOM05D004862 ORTHO05D005841 2.8e-213 745.3 495 71.1
Glyma.05G121000 Glycine max HOM05D004862 ORTHO05D005841 3.7e-213 745.0 484 72.7
CSS0014529 Camellia sinensis var. sinensis HOM05D004862 ORTHO05D005841 4.8e-213 744.6 495 71.1
FvH4_6g05370 Fragaria vesca HOM05D004862 ORTHO05D005841 4.8e-213 744.6 479 73.5
RcHm_v2.0_Chr3g0454151 Rosa chinensis HOM05D004862 ORTHO05D005841 8.2e-213 743.8 480 72.9
VMungo0251G1232 Vigna mungo HOM05D004862 ORTHO05D005841 1.8e-212 742.7 509 70.7
FAN02G3155 Fragaria x ananassa HOM05D004862 ORTHO05D005841 3.1e-212 741.9 480 73.5
TWI23G0249 Tripterygium wilfordii HOM05D004862 ORTHO05D005841 4.1e-212 741.5 478 72.0
Aqoxy6G00342 Aquilegia oxysepala HOM05D004862 ORTHO05D005841 5.3e-212 741.1 479 73.5
Gohir.D13G060400 Gossypium hirsutum HOM05D004862 ORTHO05D005841 6.9e-212 740.7 483 73.1
Nn1g06191 Nelumbo nucifera HOM05D004862 ORTHO05D005841 6.9e-212 740.7 483 71.8
CDE02G2941 Ceratophyllum demersum HOM05D004862 ORTHO05D005841 9.0e-212 740.3 478 73.4
PGR042G3925 Punica granatum HOM05D004862 ORTHO05D005841 1.5e-211 739.6 483 72.3
Medtr4g094315 Medicago truncatula HOM05D004862 ORTHO05D005841 7.7e-211 737.3 483 72.9
Sc09g0004450 Simmondsia chinensis HOM05D004862 ORTHO05D005841 7.7e-211 737.3 479 72.4
Cc02_g18820 Coffea canephora HOM05D004862 ORTHO05D005841 1.0e-210 736.9 484 72.3
Gorai.013G068500 Gossypium raimondii HOM05D004862 ORTHO05D005841 3.8e-210 734.9 497 71.4
HanXRQChr03g0065771 Helianthus annuus HOM05D004862 ORTHO05D005841 3.8e-210 734.9 478 71.5
Psat7g096360 Pisum sativum HOM05D004862 ORTHO05D005841 3.8e-210 734.9 483 71.8
SGA_v2.0_scaffold332G48937 Striga asiatica HOM05D004862 ORTHO05D005841 5.0e-210 734.6 480 73.3
Hund06875 Selenicereus undatus HOM05D004862 ORTHO05D005841 8.5e-210 733.8 490 70.8
Ah.04g163010 Amaranthus hybridus HOM05D004862 ORTHO05D005841 1.4e-209 733.0 482 71.6
CANSAT54G0577 Cannabis sativa HOM05D004862 ORTHO05D005841 1.4e-209 733.0 486 72.8
Rhsim11G0133700 Rhododendron simsii HOM05D004862 ORTHO05D005841 1.4e-209 733.0 491 70.9
AUR62003397 Chenopodium quinoa HOM05D004862 ORTHO05D005841 1.9e-209 732.6 485 71.1
PGSC0003DMG400017691 Solanum tuberosum HOM05D004862 ORTHO05D005841 2.5e-209 732.3 518 67.2
FAN09G3019 Fragaria x ananassa HOM05D004862 ORTHO05D005841 4.2e-209 731.5 480 72.5
Gohir.D01G013500 Gossypium hirsutum HOM05D004862 ORTHO05D005841 4.2e-209 731.5 463 73.2
Lj5A244T54 Lonicera japonica HOM05D004862 ORTHO05D005841 5.5e-209 731.1 479 71.4
Oeu000228.1 Olea europaea HOM05D004862 ORTHO05D005841 9.4e-209 730.3 479 71.6
Ciclev10015108m.g Citrus clementina HOM05D004862 ORTHO05D005841 2.1e-208 729.2 479 72.7
QL01p020593 Quercus lobata HOM05D004862 ORTHO05D005841 5.1e-207 724.5 573 62.5
CsaV3_7G022230 Cucumis sativus L. HOM05D004862 ORTHO05D005841 6.7e-207 724.2 459 74.9
Potri.001G207000 Populus trichocarpa HOM05D004862 ORTHO05D005841 1.1e-206 723.4 482 72.0
Gohir.A13G061500 Gossypium hirsutum HOM05D004862 ORTHO05D005841 9.7e-206 720.3 462 74.0
EL10Ac4g08938 Beta vulgaris HOM05D004862 ORTHO05D005841 8.2e-205 717.2 485 69.9
PSO675G5038 Papaver somniferum HOM05D004862 ORTHO05D005841 8.2e-205 717.2 483 70.8
ECA240G2004 Erigeron canadensis HOM05D004862 ORTHO05D005841 2.4e-204 715.7 473 71.5
MSTRG.16558 Avicennia marina HOM05D004862 ORTHO05D005841 1.2e-203 713.4 479 71.2
Migut.B00646 Erythranthe guttata HOM05D004862 ORTHO05D005841 2.0e-203 712.6 478 69.9
ATR1136G066 Amborella trichopoda HOM05D004862 ORTHO05D005841 2.6e-203 712.2 487 69.4
PSO541G6054 Papaver somniferum HOM05D004862 ORTHO05D005841 4.5e-203 711.4 488 70.1
Lj9A317G73 Lonicera japonica HOM05D004862 ORTHO05D005841 7.7e-203 710.7 490 68.6
vmacro01803 Vaccinium macrocarpon HOM05D004862 ORTHO05D005841 1.6e-200 703.0 572 61.9
Os02g0556400 Oryza sativa ssp. japonica HOM05D004862 ORTHO05D005841 4.7e-200 701.4 482 68.7
MBI06_g20970_MAGBIO Magnolia biondii HOM05D004862 ORTHO05D005841 9.7e-198 693.7 487 68.8
Sabra01G0160300 Salix brachista HOM05D004862 ORTHO05D005841 1.9e-193 679.5 563 61.5
SalBow5G3806 Salvia bowleyana HOM05D004862 ORTHO05D005841 5.5e-193 677.9 567 60.3
AUR62004780 Chenopodium quinoa HOM05D004862 ORTHO05D005841 1.2e-192 676.8 540 62.4
SalBow5G4932 Salvia bowleyana HOM05D004862 ORTHO05D005841 4.4e-190 668.3 592 57.8
GSVIVG01029751001 Vitis vinifera HOM05D004862 ORTHO05D005841 1.7e-189 666.4 478 67.4
Eucgr.G00660 Eucalyptus grandis HOM05D004862 ORTHO05D005841 8.2e-189 664.1 411 75.9
SHI16537 Sapria himalayana HOM05D004862 ORTHO05D005841 1.2e-187 660.2 479 65.6
Peaxi162Scf00003g03739 Petunia axillaris HOM05D004862 ORTHO05D005841 9.4e-185 650.6 410 74.6
BcaC03g17340 Brassica carinata HOM05D004862 ORTHO05D005841 3.7e-181 638.6 360 87.5
BolC2t11366H Brassica oleracea HOM05D004862 ORTHO05D005841 1.7e-178 629.8 332 92.8
C02p53050 Brassica napus HOM05D004862 ORTHO05D005841 5.0e-178 628.2 324 93.8
Mapoly0006s0193 Marchantia polymorpha HOM05D004862 ORTHO05D005841 9.8e-174 614.0 482 61.2
Ciclev10008412m.g Citrus clementina HOM05D004862 ORTHO05D005841 5.4e-172 608.2 447 66.0
SEGI_34202 Sequoiadendron giganteum HOM05D004862 ORTHO05D005841 7.0e-172 607.8 426 67.4
TAR116G0002 Trochodendron aralioides HOM05D004862 ORTHO05D005841 3.7e-165 585.5 373 74.0
Pp3c13_18080 Physcomitrium patens HOM05D004862 ORTHO05D005841 2.3e-162 576.2 493 56.4
SMO115G0021 Selaginella moellendorffii HOM05D004862 ORTHO05D005841 3.9e-162 575.5 483 57.3
C02p52870 Brassica napus HOM05D004862 ORTHO05D005841 5.0e-162 575.1 326 87.7
Atru.chr6.1121 Acer truncatum HOM05D004862 ORTHO05D005841 8.6e-162 574.3 360 76.4
HPP92_004639 Vanilla planifolia HOM05D004862 ORTHO05D005841 1.5e-161 573.5 373 72.1
HPP92_004630 Vanilla planifolia HOM05D004862 ORTHO05D005841 8.0e-160 567.8 373 71.6
TPR.G31479 Trifolium pratense HOM05D004862 ORTHO05D005841 6.6e-154 548.1 342 74.6
Cpa.g.sc845.1 Carica papaya HOM05D004862 ORTHO05D005841 2.8e-152 542.7 326 80.1
FAN05G4337 Fragaria x ananassa HOM05D004862 ORTHO05D005841 2.6e-150 536.2 328 77.7
TAR628G0283 Trochodendron aralioides HOM05D004862 ORTHO05D005841 3.7e-149 532.3 327 77.7
CBR_g37214 Chara braunii HOM05D004862 ORTHO05D005841 2.7e-147 526.2 481 54.3
Zm00001eb243830 Zea mays HOM05D004862 ORTHO05D005841 2.2e-141 506.5 327 74.6
CsaV3_7G014980 Cucumis sativus L. HOM05D004862 ORTHO05D005841 2.7e-131 473.0 296 75.0
SEGI_00112 Sequoiadendron giganteum HOM05D004862 ORTHO05D005841 1.7e-130 470.3 351 65.5
MCO05G740 Micromonas commoda HOM05D004862 ORTHO05D005841 1.2e-99 367.9 454 43.4
CsaV3_UNG189490 Cucumis sativus L. HOM05D004862 ORTHO05D005841 7.9e-99 365.2 222 76.6
Cre08.g359100 Chlamydomonas reinhardtii HOM05D004862 ORTHO05D005841 3.3e-97 359.8 387 48.1
Ca_29817_v3 Cicer arietinum L. HOM05D004862 ORTHO05D005841 1.8e-87 327.4 210 73.8
PRCOL_00003583 Prasinoderma coloniale HOM05D004862 ORTHO05D005841 3.4e-86 323.2 430 42.8
unitig_26.g9584 Utricularia gibba HOM05D004862 ORTHO05D005841 1.9e-84 317.4 227 63.4
Ca_25384_v3 Cicer arietinum L. HOM05D004862 ORTHO05D005841 1.4e-74 284.6 186 72.6
CsaV3_7G015000 Cucumis sativus L. HOM05D004862 ORTHO05D005841 4.4e-73 279.6 159 83.0
CsaV3_UNG187480 Cucumis sativus L. HOM05D004862 ORTHO05D005841 4.4e-73 279.6 159 83.0
CsaV3_7G014960 Cucumis sativus L. HOM05D004862 ORTHO05D005841 2.0e-70 270.8 159 81.8
unitig_26.g9585 Utricularia gibba HOM05D004862 ORTHO05D005841 2.8e-64 250.4 145 76.6
Cfa021801 Carpinus fangiana HOM05D004862 ORTHO05D005841 7.7e-54 215.7 416 32.7
BolC2t11379H Brassica oleracea HOM05D004862 ORTHO05D005841 1.0e-45 188.7 119 79.8
Ca_31280_v3 Cicer arietinum L. HOM05D004862 ORTHO05D005841 6.2e-43 179.5 106 79.2
CsaV3_7G014970 Cucumis sativus L. HOM05D004862 ORTHO05D005841 1.4e-42 178.3 94 89.4
CsaV3_7G015010 Cucumis sativus L. HOM05D004862 ORTHO05D005841 1.8e-42 177.9 93 90.3
CsaV3_UNG197500 Cucumis sativus L. HOM05D004862 ORTHO05D005841 5.8e-41 172.9 106 80.2
AagrBONN_evm.TU.Sc2ySwM_344.4621 Anthoceros agrestis HOM05D004862 ORTHO05D005841 3.2e-39 167.2 137 56.2
Potri.003G022650 Populus trichocarpa HOM05D004862 ORTHO05D005841 2.1e-30 137.9 91 71.4
TAR628G0087 Trochodendron aralioides HOM05D004862 ORTHO05D005841 5.2e-18 96.7 93 46.2
Cfa010153 Carpinus fangiana HOM05D004862 ORTHO05D005841 4.4e-17 93.6 70 64.3
CsaV3_7G014950 Cucumis sativus L. HOM05D004862 ORTHO05D005841 5.8e-17 93.2 65 60.0
Actinidia00239 Actinidia chinensis HOM05D004862 ORTHO05D005841 7.6e-17 92.8 87 52.9
Potri.003G022701 Populus trichocarpa HOM05D004862 ORTHO05D005841 1.1e-15 89.0 76 59.2
unitig_26.g9586 Utricularia gibba HOM05D004862 ORTHO05D005841 3.2e-15 87.4 68 63.2
Dinv28090 Davidia involucrata HOM05D000259 ORTHO05D000155 2.1e-06 58.2 34 70.6


User provided reference genes

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