Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g15200 Schrenkiella parvula HOM05D004675 ORTHO05D005631 4.7e-112 407.9 210 100.0
Thhalv10004915m.g Eutrema salsugineum HOM05D004675 ORTHO05D005631 2.0e-110 402.5 210 98.6
AL5G14640 Arabidopsis lyrata HOM05D004675 ORTHO05D005631 2.4e-108 395.6 210 95.7
BcaB07g30625 Brassica carinata HOM05D004675 ORTHO05D005631 2.4e-108 395.6 210 96.2
A09p25100 Brassica napus HOM05D004675 ORTHO05D005631 2.4e-108 395.6 210 96.2
BraA09t38098Z Brassica rapa HOM05D004675 ORTHO05D005631 2.4e-108 395.6 210 96.2
Carub.0005s0383 Capsella rubella HOM05D004675 ORTHO05D005631 2.4e-108 395.6 210 95.7
C09p32160 Brassica napus HOM05D004675 ORTHO05D005631 9.1e-108 393.7 210 95.7
BcaC04g21407 Brassica carinata HOM05D004675 ORTHO05D005631 3.5e-107 391.7 210 95.2
BolC9t56064H Brassica oleracea HOM05D004675 ORTHO05D005631 3.5e-107 391.7 210 95.2
AT3G25980 Arabidopsis thaliana HOM05D004675 ORTHO05D005631 2.7e-104 382.1 210 93.8
THA.LOC104805258 Tarenaya hassleriana HOM05D004675 ORTHO05D005631 1.4e-103 379.8 208 93.3
Aa31LG2G6360 Aethionema arabicum HOM05D004675 ORTHO05D005631 1.2e-102 376.7 208 92.8
Phvul.001G258800 Phaseolus vulgaris HOM05D004675 ORTHO05D005631 1.8e-100 369.4 208 90.4
Duzib251G0102 Durio zibethinus HOM05D004675 ORTHO05D005631 4.1e-100 368.2 208 91.3
Manes.13G014900 Manihot esculenta HOM05D004675 ORTHO05D005631 5.4e-100 367.9 208 90.4
VMungo1383G2932 Vigna mungo HOM05D004675 ORTHO05D005631 5.4e-100 367.9 208 90.4
Manes.12G015800 Manihot esculenta HOM05D004675 ORTHO05D005631 7.0e-100 367.5 208 90.4
Thecc.02G273100 Theobroma cacao HOM05D004675 ORTHO05D005631 7.0e-100 367.5 208 90.4
Lalb_Chr08g0230731 Lupinus albus HOM05D004675 ORTHO05D005631 9.1e-100 367.1 208 88.9
Ciclev10032763m.g Citrus clementina HOM05D004675 ORTHO05D005631 1.2e-99 366.7 208 90.4
Atru.chr11.2230 Acer truncatum HOM05D004675 ORTHO05D005631 1.6e-99 366.3 208 88.9
Glyma.18G009900 Glycine max HOM05D004675 ORTHO05D005631 1.6e-99 366.3 208 89.9
COL.COLO4_23607 Corchorus olitorius HOM05D004675 ORTHO05D005631 2.0e-99 365.9 208 90.4
Cpa.g.c35504 Carica papaya HOM05D004675 ORTHO05D005631 3.5e-99 365.2 208 89.4
arahy.Tifrunner.gnm1.ann1.06P6RC Arachis hypogaea HOM05D004675 ORTHO05D005631 4.5e-99 364.8 207 89.4
arahy.Tifrunner.gnm1.ann1.J0N2EL Arachis hypogaea HOM05D004675 ORTHO05D005631 4.5e-99 364.8 207 89.4
MSTRG.7971 Avicennia marina HOM05D004675 ORTHO05D005631 4.5e-99 364.8 207 90.3
Gohir.A03G129700 Gossypium hirsutum HOM05D004675 ORTHO05D005631 7.7e-99 364.0 208 89.4
FvH4_4g24620 Fragaria vesca HOM05D004675 ORTHO05D005631 1.0e-98 363.6 208 88.0
Oeu038665.1 Olea europaea HOM05D004675 ORTHO05D005631 1.0e-98 363.6 207 89.4
Psat5g093080 Pisum sativum HOM05D004675 ORTHO05D005631 1.0e-98 363.6 208 88.5
Aqoxy5G03546 Aquilegia oxysepala HOM05D004675 ORTHO05D005631 1.3e-98 363.2 208 89.4
Duzib268G1570 Durio zibethinus HOM05D004675 ORTHO05D005631 1.3e-98 363.2 208 88.9
Potri.008G179600 Populus trichocarpa HOM05D004675 ORTHO05D005631 1.3e-98 363.2 208 88.9
CiPaw.06G062900 Carya illinoinensis HOM05D004675 ORTHO05D005631 1.7e-98 362.8 208 88.0
Gohir.D02G155000 Gossypium hirsutum HOM05D004675 ORTHO05D005631 1.7e-98 362.8 208 89.4
Gorai.005G172500 Gossypium raimondii HOM05D004675 ORTHO05D005631 1.7e-98 362.8 208 89.4
Lj6g0000646 Lotus japonicus HOM05D004675 ORTHO05D005631 2.3e-98 362.5 208 88.5
TWI18G0072 Tripterygium wilfordii HOM05D004675 ORTHO05D005631 3.8e-98 361.7 208 88.0
GSVIVG01010325001 Vitis vinifera HOM05D004675 ORTHO05D005631 3.8e-98 361.7 208 88.5
MSTRG.527 Avicennia marina HOM05D004675 ORTHO05D005631 5.0e-98 361.3 207 88.9
CANSAT01G3139 Cannabis sativa HOM05D004675 ORTHO05D005631 5.0e-98 361.3 207 88.9
Potri.010G055100 Populus trichocarpa HOM05D004675 ORTHO05D005631 5.0e-98 361.3 208 88.5
PGR102G1366 Punica granatum HOM05D004675 ORTHO05D005631 5.0e-98 361.3 208 88.0
TAR629G1273 Trochodendron aralioides HOM05D004675 ORTHO05D005631 6.6e-98 360.9 208 88.5
Haze_12338 Corylus avellana HOM05D004675 ORTHO05D005631 8.6e-98 360.5 208 88.0
Medtr3g085940 Medicago truncatula HOM05D004675 ORTHO05D005631 1.5e-97 359.8 208 88.0
Gohir.A01G156300 Gossypium hirsutum HOM05D004675 ORTHO05D005631 2.5e-97 359.0 208 87.5
Gohir.D01G154000 Gossypium hirsutum HOM05D004675 ORTHO05D005631 2.5e-97 359.0 208 87.5
Gorai.002G190700 Gossypium raimondii HOM05D004675 ORTHO05D005631 2.5e-97 359.0 208 87.5
RcHm_v2.0_Chr4g0431671 Rosa chinensis HOM05D004675 ORTHO05D005631 2.5e-97 359.0 208 86.5
Oeu041690.1 Olea europaea HOM05D004675 ORTHO05D005631 3.3e-97 358.6 211 87.7
Sabra08G0137200 Salix brachista HOM05D004675 ORTHO05D005631 3.3e-97 358.6 208 88.5
CSS0008983 Camellia sinensis var. sinensis HOM05D004675 ORTHO05D005631 4.2e-97 358.2 210 86.7
Dinv18164 Davidia involucrata HOM05D004675 ORTHO05D005631 4.2e-97 358.2 208 87.0
MD13G1109700 Malus domestica HOM05D004675 ORTHO05D005631 4.2e-97 358.2 208 87.0
SalBow2G2451 Salvia bowleyana HOM05D004675 ORTHO05D005631 4.2e-97 358.2 207 87.0
Cc11_g16480 Coffea canephora HOM05D004675 ORTHO05D005631 5.5e-97 357.8 201 90.0
TWI75G1255 Tripterygium wilfordii HOM05D004675 ORTHO05D005631 5.5e-97 357.8 213 86.9
Duzib248G1503 Durio zibethinus HOM05D004675 ORTHO05D005631 7.2e-97 357.5 208 87.5
MD16G1109600 Malus domestica HOM05D004675 ORTHO05D005631 9.5e-97 357.1 208 86.5
SGA_v2.0_scaffold1G00563 Striga asiatica HOM05D004675 ORTHO05D005631 9.5e-97 357.1 207 88.4
HanXRQChr06g0174811 Helianthus annuus HOM05D004675 ORTHO05D005631 1.2e-96 356.7 208 86.5
HanXRQChr17g0540031 Helianthus annuus HOM05D004675 ORTHO05D005631 1.2e-96 356.7 208 87.0
ClCG05G026270 Citrullus lanatus HOM05D004675 ORTHO05D005631 1.6e-96 356.3 208 87.0
Prupe.1G235600 Prunus persica HOM05D004675 ORTHO05D005631 1.6e-96 356.3 208 86.1
SalBow8G5054 Salvia bowleyana HOM05D004675 ORTHO05D005631 1.6e-96 356.3 208 86.1
Nn3g16555 Nelumbo nucifera HOM05D004675 ORTHO05D005631 2.1e-96 355.9 208 88.0
CsaV3_5G030550 Cucumis sativus L. HOM05D004675 ORTHO05D005631 2.8e-96 355.5 208 87.0
Prupe.1G235300 Prunus persica HOM05D004675 ORTHO05D005631 3.6e-96 355.1 208 85.6
Migut.K00688 Erythranthe guttata HOM05D004675 ORTHO05D005631 4.7e-96 354.8 207 87.0
MBI11_g02883_MAGBIO Magnolia biondii HOM05D004675 ORTHO05D005631 8.0e-96 354.0 208 87.0
MELO3C011895.2 Cucumis melo HOM05D004675 ORTHO05D005631 1.0e-95 353.6 210 86.2
Lsat_1_v5_gn_3_29441 Lactuca sativa HOM05D004675 ORTHO05D005631 1.4e-95 353.2 209 84.7
Actinidia30679 Actinidia chinensis HOM05D004675 ORTHO05D005631 3.0e-95 352.1 208 85.1
CAN.G227.11 Capsicum annuum HOM05D004675 ORTHO05D005631 4.0e-95 351.7 208 87.0
Solyc05g014370.3 Solanum lycopersicum HOM05D004675 ORTHO05D005631 6.8e-95 350.9 208 87.0
Sopen05g009500 Solanum pennellii HOM05D004675 ORTHO05D005631 6.8e-95 350.9 208 87.0
PGSC0003DMG400017457 Solanum tuberosum HOM05D004675 ORTHO05D005631 6.8e-95 350.9 208 87.0
unitig_8.g3141 Utricularia gibba HOM05D004675 ORTHO05D005631 6.8e-95 350.9 208 86.1
PSO782G3312 Papaver somniferum HOM05D004675 ORTHO05D005631 1.2e-94 350.1 206 86.9
QL03p055286 Quercus lobata HOM05D004675 ORTHO05D005631 1.2e-94 350.1 208 87.0
Hund02761 Selenicereus undatus HOM05D004675 ORTHO05D005631 1.2e-94 350.1 208 86.1
DCAR_007019 Daucus carota HOM05D004675 ORTHO05D005631 2.6e-94 349.0 208 84.6
ATR0686G191 Amborella trichopoda HOM05D004675 ORTHO05D005631 4.4e-94 348.2 208 85.6
PSO063G1359 Papaver somniferum HOM05D004675 ORTHO05D005631 5.7e-94 347.8 206 86.4
Sed0023640 Sechium edule HOM05D004675 ORTHO05D005631 1.7e-93 346.3 210 84.3
Hma1.2p1_0079F.1_g041690 Hydrangea macrophylla HOM05D004675 ORTHO05D005631 2.2e-93 345.9 208 85.6
vmacro01089 Vaccinium macrocarpon HOM05D004675 ORTHO05D005631 4.9e-93 344.7 218 81.2
CDE02G3169 Ceratophyllum demersum HOM05D004675 ORTHO05D005631 6.3e-93 344.4 208 84.6
CARHR146960 Cardamine hirsuta HOM05D004675 ORTHO05D005631 2.4e-92 342.4 178 96.6
Os04g0486500 Oryza sativa ssp. japonica HOM05D004675 ORTHO05D005631 3.2e-92 342.0 208 83.7
Peaxi162Scf00128g00833 Petunia axillaris HOM05D004675 ORTHO05D005631 9.2e-92 340.5 208 85.6
FAN07G1447 Fragaria x ananassa HOM05D004675 ORTHO05D005631 2.7e-91 339.0 208 84.1
FAN12G3600 Fragaria x ananassa HOM05D004675 ORTHO05D005631 2.7e-91 339.0 208 84.1
HPP92_024295 Vanilla planifolia HOM05D004675 ORTHO05D005631 4.5e-91 338.2 208 82.2
HPP92_024302 Vanilla planifolia HOM05D004675 ORTHO05D005631 4.5e-91 338.2 208 81.7
Dinv11000 Davidia involucrata HOM05D004675 ORTHO05D005631 1.0e-90 337.0 197 87.3
FAN17G2208 Fragaria x ananassa HOM05D004675 ORTHO05D005631 1.0e-90 337.0 208 83.7
Sabra10G0049900 Salix brachista HOM05D004675 ORTHO05D005631 1.7e-90 336.3 208 84.6
FAN22G1703 Fragaria x ananassa HOM05D004675 ORTHO05D005631 9.5e-89 330.5 208 81.7
Rhsim12G0035500 Rhododendron simsii HOM05D004675 ORTHO05D005631 2.1e-88 329.3 208 82.2
QL11p019873 Quercus lobata HOM05D004675 ORTHO05D005631 4.7e-88 328.2 178 90.4
Ca_16490_v3 Cicer arietinum L. HOM05D004675 ORTHO05D005631 6.1e-88 327.8 178 91.0
CiPaw.05G173000 Carya illinoinensis HOM05D004675 ORTHO05D005631 1.8e-87 326.2 177 91.0
QL11p019923 Quercus lobata HOM05D004675 ORTHO05D005631 3.4e-86 322.0 178 89.3
Hund25435 Selenicereus undatus HOM05D004675 ORTHO05D005631 4.9e-85 318.2 208 80.3
SEGI_13539 Sequoiadendron giganteum HOM05D004675 ORTHO05D005631 2.7e-83 312.4 201 74.6
AUR62024170 Chenopodium quinoa HOM05D004675 ORTHO05D005631 1.0e-82 310.5 209 78.9
ECA246G2134 Erigeron canadensis HOM05D004675 ORTHO05D005631 5.0e-82 308.1 178 83.7
Zm00001eb425240 Zea mays HOM05D004675 ORTHO05D005631 8.0e-80 300.8 191 81.2
Dinv18160 Davidia involucrata HOM05D004675 ORTHO05D005631 1.1e-79 300.4 208 78.4
AUR62005564 Chenopodium quinoa HOM05D004675 ORTHO05D005631 1.2e-78 297.0 208 77.9
Sed0021695 Sechium edule HOM05D004675 ORTHO05D005631 2.7e-75 285.8 167 83.2
Glyma.11G247400 Glycine max HOM05D004675 ORTHO05D005631 3.0e-74 282.3 155 89.7
Zm00001eb079190 Zea mays HOM05D004675 ORTHO05D005631 3.3e-73 278.9 206 72.8
Sc04g0009910 Simmondsia chinensis HOM05D004675 ORTHO05D005631 4.3e-73 278.5 154 89.0
EL10Ac6g13425 Beta vulgaris HOM05D004675 ORTHO05D005631 3.7e-69 265.4 208 70.2
Mapoly0038s0109 Marchantia polymorpha HOM05D004675 ORTHO05D005631 7.1e-68 261.2 195 64.6
Nitab4.5_0001898g0060 Nicotiana tabacum HOM05D004675 ORTHO05D005631 5.6e-65 251.5 212 67.0
Pp3c4_13910 Physcomitrium patens HOM05D004675 ORTHO05D005631 5.6e-65 251.5 204 60.8
AagrBONN_evm.TU.Sc2ySwM_228.148 Anthoceros agrestis HOM05D004675 ORTHO05D005631 1.6e-64 250.0 198 61.6
SMO201G0213 Selaginella moellendorffii HOM05D004675 ORTHO05D005631 1.1e-63 247.3 199 60.3
Eucgr.B03457 Eucalyptus grandis HOM05D004675 ORTHO05D005631 4.0e-63 245.4 161 79.5
Nitab4.5_0000581g0180 Nicotiana tabacum HOM05D004675 ORTHO05D005631 2.0e-62 243.0 207 64.7
CBR_g22979 Chara braunii HOM05D004675 ORTHO05D005631 8.7e-58 227.6 208 53.4
Actinidia08092 Actinidia chinensis HOM05D004675 ORTHO05D005631 2.8e-56 222.6 119 90.8
C07p35010 Brassica napus HOM05D004675 ORTHO05D005631 7.6e-54 214.5 167 69.5
TPR.G22441 Trifolium pratense HOM05D004675 ORTHO05D005631 3.8e-53 212.2 134 85.8
HanXRQChr01g0005811 Helianthus annuus HOM05D004675 ORTHO05D005631 4.3e-49 198.7 150 69.3
Lsat_1_v5_gn_0_42421 Lactuca sativa HOM05D004675 ORTHO05D005631 2.1e-48 196.4 208 51.4
MCO12G028 Micromonas commoda HOM05D004675 ORTHO05D005631 3.1e-47 192.6 202 52.5
PRCOL_00002054 Prasinoderma coloniale HOM05D004675 ORTHO05D005631 3.8e-45 185.7 204 45.6
Cre08.g380400 Chlamydomonas reinhardtii HOM05D004675 ORTHO05D005631 6.4e-45 184.9 204 46.1
Ah.03g133810 Amaranthus hybridus HOM05D004675 ORTHO05D005631 2.3e-42 176.4 209 52.2
Oeu060827.1 Olea europaea HOM05D004675 ORTHO05D005631 1.3e-40 170.6 160 62.5
HanXRQChr14g0462331 Helianthus annuus HOM05D004675 ORTHO05D005631 9.0e-39 164.5 98 81.6
Lsat_1_v5_gn_3_72261 Lactuca sativa HOM05D004675 ORTHO05D005631 1.5e-38 163.7 232 42.7
Dinv15224 Davidia involucrata HOM05D004675 ORTHO05D005631 2.1e-35 153.3 208 47.6
Atru.chr2.951 Acer truncatum HOM05D004675 ORTHO05D005631 8.2e-32 141.4 95 77.9
HanXRQChr13g0416091 Helianthus annuus HOM05D004675 ORTHO05D005631 3.1e-31 139.4 99 72.7
Oeu049161.1 Olea europaea HOM05D004675 ORTHO05D005631 4.5e-30 135.6 207 45.4
BcaC06g33934 Brassica carinata HOM05D004675 ORTHO05D005631 1.1e-28 131.0 92 75.0
Haze_26713 Corylus avellana HOM05D000877 ORTHO05D005631 1.2e-27 127.5 187 36.9
Atru.chr9.690 Acer truncatum HOM05D004675 ORTHO05D005631 6.1e-27 125.2 135 54.8
HanXRQChr11g0351801 Helianthus annuus HOM05D004675 ORTHO05D005631 1.3e-24 117.5 59 88.1
BolC7t44033H Brassica oleracea HOM05D004675 ORTHO05D005631 1.4e-23 114.0 82 72.0
Actinidia08091 Actinidia chinensis HOM05D004675 ORTHO05D005631 5.3e-23 112.1 75 77.3
A06p42320 Brassica napus HOM05D004675 ORTHO05D005631 3.4e-22 109.4 60 90.0
HanXRQChr10g0283671 Helianthus annuus HOM05D004675 ORTHO05D005631 5.9e-22 108.6 73 76.7
Actinidia25751 Actinidia chinensis HOM05D004675 ORTHO05D005631 7.7e-22 108.2 84 67.9
Cc11_g17360 Coffea canephora HOM05D004675 ORTHO05D005631 5.5e-12 75.5 61 60.7
BcaB01g02675 Brassica carinata HOM05D004675 ORTHO05D000065 1.6e-11 73.9 62 69.4
Atru.chr4.1238 Acer truncatum HOM05D004675 ORTHO05D052308 4.8e-08 62.4 39 69.2
BcaB04g19721 Brassica carinata HOM05D004675 ORTHO05D092614 4.8e-08 62.4 47 74.5
Hma1.2p1_3454F.1_g336085 Hydrangea macrophylla HOM05D004675 ORTHO05D005631 8.2e-08 61.6 38 73.7


User provided reference genes

Program Settings