Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g15090 Schrenkiella parvula HOM05D006108 ORTHO05D007605 1.9e-59 232.3 113 100.0
BcaB07g30252 Brassica carinata HOM05D006108 ORTHO05D007605 1.4e-49 199.5 115 85.2
A02p34100 Brassica napus HOM05D006108 ORTHO05D007605 4.4e-48 194.5 114 84.2
AT3G25855 Arabidopsis thaliana HOM05D006108 ORTHO05D007605 1.8e-46 189.1 113 78.8
BcaC06g31111 Brassica carinata HOM05D006108 ORTHO05D007605 2.7e-45 185.3 116 81.0
Thhalv10005176m.g Eutrema salsugineum HOM05D006108 ORTHO05D007605 5.9e-45 184.1 104 85.6
AL5G14490 Arabidopsis lyrata HOM05D006108 ORTHO05D007605 2.9e-44 181.8 115 77.4
BcaC03g17291 Brassica carinata HOM05D006108 ORTHO05D007605 7.2e-43 177.2 111 79.3
BolC2t11319H Brassica oleracea HOM05D006108 ORTHO05D007605 7.2e-43 177.2 111 79.3
BraA02t08427Z Brassica rapa HOM05D006108 ORTHO05D007605 1.2e-42 176.4 104 83.7
A06p42440 Brassica napus HOM05D006108 ORTHO05D007605 1.8e-41 172.6 114 80.7
BraA06t27159Z Brassica rapa HOM05D006108 ORTHO05D007605 1.8e-41 172.6 114 80.7
BcaC06g33947 Brassica carinata HOM05D006108 ORTHO05D007605 3.4e-40 168.3 114 79.8
CARHR146800 Cardamine hirsuta HOM05D006108 ORTHO05D007605 3.4e-40 168.3 116 74.1
C07p34870 Brassica napus HOM05D006108 ORTHO05D007605 7.5e-40 167.2 114 78.9
BolC7t44019H Brassica oleracea HOM05D006108 ORTHO05D007605 1.7e-39 166.0 114 78.9
C02p52370 Brassica napus HOM05D006108 ORTHO05D007605 2.2e-39 165.6 103 80.6
Carub.0005s0368 Capsella rubella HOM05D006108 ORTHO05D007605 4.5e-37 157.9 110 68.2
THA.LOC104824033 Tarenaya hassleriana HOM05D006108 ORTHO05D007605 8.3e-31 137.1 124 58.9
Lsat_1_v5_gn_8_39200 Lactuca sativa HOM05D006108 ORTHO05D007605 6.8e-25 117.5 99 55.6
Eucgr.B03028 Eucalyptus grandis HOM05D006108 ORTHO05D007605 2.0e-24 115.9 87 60.9
Duzib248G0641 Durio zibethinus HOM05D006108 ORTHO05D007605 3.4e-24 115.2 82 61.0
Dinv04481 Davidia involucrata HOM05D001580 ORTHO05D001517 4.4e-24 114.8 87 58.6
Potri.008G119200 Populus trichocarpa HOM05D006108 ORTHO05D007605 4.4e-24 114.8 81 64.2
TWI79G0681 Tripterygium wilfordii HOM05D006108 ORTHO05D007605 9.8e-24 113.6 70 70.0
TPR.G38355 Trifolium pratense HOM05D006108 ORTHO05D007605 1.7e-23 112.8 93 60.2
Manes.06G070100 Manihot esculenta HOM05D006108 ORTHO05D007605 2.2e-23 112.5 73 63.0
PGR102G2516 Punica granatum HOM05D006108 ORTHO05D007605 2.2e-23 112.5 86 62.8
Manes.14G100500 Manihot esculenta HOM05D006108 ORTHO05D007605 2.9e-23 112.1 88 58.0
MD13G1043700 Malus domestica HOM05D006108 ORTHO05D007605 3.7e-23 111.7 101 53.5
COL.COLO4_07905 Corchorus olitorius HOM05D001580 ORTHO05D001517 8.3e-23 110.5 77 61.0
HanXRQChr02g0058721 Helianthus annuus HOM05D006108 ORTHO05D007605 1.1e-22 110.2 95 54.7
PSO017G5628 Papaver somniferum HOM05D006108 ORTHO05D007605 1.1e-22 110.2 86 55.8
TWI31G1391 Tripterygium wilfordii HOM05D006108 ORTHO05D007605 2.4e-22 109.0 84 59.5
Lj2g0013090 Lotus japonicus HOM05D006108 ORTHO05D007605 3.2e-22 108.6 92 59.8
RcHm_v2.0_Chr4g0435471 Rosa chinensis HOM05D006108 ORTHO05D007605 3.2e-22 108.6 77 63.6
CSS0049683 Camellia sinensis var. sinensis HOM05D006108 ORTHO05D007605 5.4e-22 107.8 78 61.5
Gorai.008G184200 Gossypium raimondii HOM05D006108 ORTHO05D007605 7.0e-22 107.5 75 65.3
Medtr5g055190 Medicago truncatula HOM05D006108 ORTHO05D007605 7.0e-22 107.5 70 64.3
Cc11_g10300 Coffea canephora HOM05D006108 ORTHO05D007605 9.2e-22 107.1 87 56.3
Glyma.01G082600 Glycine max HOM05D006108 ORTHO05D007605 9.2e-22 107.1 86 59.3
Lalb_Chr10g0099931 Lupinus albus HOM05D006108 ORTHO05D007605 9.2e-22 107.1 82 62.2
Sabra08G0090500 Salix brachista HOM05D006108 ORTHO05D007605 2.0e-21 105.9 81 58.0
Sed0000256 Sechium edule HOM05D006108 ORTHO05D007605 2.0e-21 105.9 84 54.8
Ciclev10033455m.g Citrus clementina HOM05D006108 ORTHO05D007605 2.7e-21 105.5 83 60.2
Oeu008040.1 Olea europaea HOM05D006108 ORTHO05D007605 2.7e-21 105.5 71 64.8
Phvul.003G034700 Phaseolus vulgaris HOM05D006108 ORTHO05D007605 2.7e-21 105.5 77 61.0
FAN07G1587 Fragaria x ananassa HOM05D006108 ORTHO05D007605 3.5e-21 105.1 73 64.4
Migut.L01077 Erythranthe guttata HOM05D006108 ORTHO05D007605 4.6e-21 104.8 74 64.9
Prupe.1G308800 Prunus persica HOM05D006108 ORTHO05D007605 5.9e-21 104.4 70 67.1
DCAR_026728 Daucus carota HOM05D006108 ORTHO05D007605 7.8e-21 104.0 77 57.1
Gohir.D09G173100 Gossypium hirsutum HOM05D006108 ORTHO05D007605 1.0e-20 103.6 75 60.0
Oeu041896.1 Olea europaea HOM05D006108 ORTHO05D007605 1.3e-20 103.2 71 64.8
FAN22G0059 Fragaria x ananassa HOM05D006108 ORTHO05D007605 2.3e-20 102.4 73 63.0
MD16G1044500 Malus domestica HOM05D006108 ORTHO05D007605 3.9e-20 101.7 72 65.3
Gohir.A09G177600 Gossypium hirsutum HOM05D006108 ORTHO05D007605 5.0e-20 101.3 111 45.0
Gorai.006G195000 Gossypium raimondii HOM05D006108 ORTHO05D007605 5.0e-20 101.3 111 45.0
CsaV3_6G003400 Cucumis sativus L. HOM05D006108 ORTHO05D007605 8.6e-20 100.5 77 58.4
Psat2g097920 Pisum sativum HOM05D006108 ORTHO05D007605 1.1e-19 100.1 84 56.0
Gohir.A12G168100 Gossypium hirsutum HOM05D006108 ORTHO05D007605 3.3e-19 98.6 71 63.4
QL01p043861 Quercus lobata HOM05D006108 ORTHO05D007605 3.3e-19 98.6 68 60.3
CiPaw.15G083500 Carya illinoinensis HOM05D006108 ORTHO05D007605 4.3e-19 98.2 72 58.3
Dinv09807 Davidia involucrata HOM05D006108 ORTHO05D007605 5.6e-19 97.8 78 57.7
Gohir.A09G047400 Gossypium hirsutum HOM05D006108 ORTHO05D007605 5.6e-19 97.8 88 47.7
Gorai.006G061500 Gossypium raimondii HOM05D006108 ORTHO05D007605 5.6e-19 97.8 88 47.7
Lj2g0017619 Lotus japonicus HOM05D006108 ORTHO05D007605 5.6e-19 97.8 87 51.7
Psat6g222560 Pisum sativum HOM05D006108 ORTHO05D007605 5.6e-19 97.8 90 52.2
Thecc.03G033400 Theobroma cacao HOM05D006108 ORTHO05D007605 1.2e-18 96.7 73 54.8
Atru.chr9.818 Acer truncatum HOM05D006108 ORTHO05D007605 1.6e-18 96.3 72 58.3
Gohir.D12G171700 Gossypium hirsutum HOM05D006108 ORTHO05D007605 1.6e-18 96.3 71 62.0
TAR371G1266 Trochodendron aralioides HOM05D006108 ORTHO05D007605 1.6e-18 96.3 81 49.4
Actinidia35084 Actinidia chinensis HOM05D006108 ORTHO05D007605 2.1e-18 95.9 79 57.0
Eucgr.B00718 Eucalyptus grandis HOM05D006108 ORTHO05D007605 2.8e-18 95.5 79 53.2
Gohir.D09G048600 Gossypium hirsutum HOM05D006108 ORTHO05D007605 2.8e-18 95.5 85 48.2
TPR.G35239 Trifolium pratense HOM05D006108 ORTHO05D007605 2.8e-18 95.5 89 51.7
FAN12G0874 Fragaria x ananassa HOM05D006108 ORTHO05D007605 3.6e-18 95.1 80 56.2
FAN13G1808 Fragaria x ananassa HOM05D006108 ORTHO05D007605 4.7e-18 94.7 73 56.2
FAN18G0723 Fragaria x ananassa HOM05D006108 ORTHO05D007605 4.7e-18 94.7 73 56.2
FAN18G1336 Fragaria x ananassa HOM05D006108 ORTHO05D007605 4.7e-18 94.7 73 56.2
RcHm_v2.0_Chr7g0185241 Rosa chinensis HOM05D006108 ORTHO05D007605 4.7e-18 94.7 73 56.2
FvH4_5g12320 Fragaria vesca HOM05D006108 ORTHO05D007605 6.2e-18 94.4 73 56.2
GSVIVG01008271001 Vitis vinifera HOM05D006108 ORTHO05D007605 6.2e-18 94.4 82 51.2
Glyma.09G185400 Glycine max HOM05D006108 ORTHO05D007605 8.0e-18 94.0 84 48.8
CDE05G0497 Ceratophyllum demersum HOM05D006108 ORTHO05D007605 1.1e-17 93.6 76 55.3
Phvul.004G158700 Phaseolus vulgaris HOM05D006108 ORTHO05D007605 1.1e-17 93.6 78 48.7
Cfa019791 Carpinus fangiana HOM05D006108 ORTHO05D007605 1.4e-17 93.2 83 51.8
MD14G1225800 Malus domestica HOM05D006108 ORTHO05D007605 1.4e-17 93.2 91 48.4
Manes.05G140027 Manihot esculenta HOM05D006108 ORTHO05D007605 1.4e-17 93.2 70 57.1
Rhsim12G0143800 Rhododendron simsii HOM05D006108 ORTHO05D007605 1.4e-17 93.2 84 52.4
Glyma.07G090500 Glycine max HOM05D006108 ORTHO05D007605 1.8e-17 92.8 84 50.0
Nn3g17803 Nelumbo nucifera HOM05D006108 ORTHO05D007605 1.8e-17 92.8 82 54.9
VMungo0464G0155 Vigna mungo HOM05D006108 ORTHO05D007605 2.3e-17 92.4 84 47.6
Duzib084G1067 Durio zibethinus HOM05D006108 ORTHO05D007605 3.1e-17 92.0 88 47.7
FAN08G0393 Fragaria x ananassa HOM05D006108 ORTHO05D007605 3.1e-17 92.0 73 54.8
Sopen03g038460 Solanum pennellii HOM05D006108 ORTHO05D007605 5.2e-17 91.3 106 45.3
CAN.G388.38 Capsicum annuum HOM05D006108 ORTHO05D007605 6.8e-17 90.9 84 50.0
Prupe.5G220300 Prunus persica HOM05D006108 ORTHO05D007605 6.8e-17 90.9 87 50.6
Sc14g0007540 Simmondsia chinensis HOM05D006108 ORTHO05D007605 6.8e-17 90.9 84 53.6
Ciclev10022919m.g Citrus clementina HOM05D006108 ORTHO05D007605 8.9e-17 90.5 75 53.3
MD06G1214900 Malus domestica HOM05D006108 ORTHO05D007605 8.9e-17 90.5 92 44.6
PGSC0003DMG402005714 Solanum tuberosum HOM05D006108 ORTHO05D007605 8.9e-17 90.5 104 45.2
Nitab4.5_0003285g0040 Nicotiana tabacum HOM05D006108 ORTHO05D007605 1.2e-16 90.1 92 47.8
Nn4g23806 Nelumbo nucifera HOM05D006108 ORTHO05D007605 3.4e-16 88.6 68 54.4
CsaV3_1G006560 Cucumis sativus L. HOM05D006108 ORTHO05D007605 5.8e-16 87.8 68 52.9
Nitab4.5_0001914g0010 Nicotiana tabacum HOM05D006108 ORTHO05D007605 9.8e-16 87.0 67 53.7
Nitab4.5_0004412g0100 Nicotiana tabacum HOM05D006108 ORTHO05D007605 1.3e-15 86.7 88 48.9
Nitab4.5_0001599g0060 Nicotiana tabacum HOM05D006108 ORTHO05D007605 1.7e-15 86.3 88 48.9
Sed0021850 Sechium edule HOM05D006108 ORTHO05D007605 2.9e-15 85.5 72 51.4
QL10p025064 Quercus lobata HOM05D006108 ORTHO05D007605 3.7e-15 85.1 83 49.4
arahy.Tifrunner.gnm1.ann1.1V8BDZ Arachis hypogaea HOM05D006108 ORTHO05D007605 4.9e-15 84.7 82 45.1
CiPaw.15G129300 Carya illinoinensis HOM05D006108 ORTHO05D007605 4.9e-15 84.7 76 52.6
arahy.Tifrunner.gnm1.ann1.L19XPP Arachis hypogaea HOM05D006108 ORTHO05D007605 6.4e-15 84.3 82 45.1
Sopen05g012490 Solanum pennellii HOM05D006108 ORTHO05D007605 6.4e-15 84.3 68 54.4
Cpa.g.sc1.185 Carica papaya HOM05D006108 ORTHO05D007605 1.1e-14 83.6 64 56.2
HPP92_026959 Vanilla planifolia HOM05D006108 ORTHO05D007605 9.2e-14 80.5 76 47.4
ECA233G5877 Erigeron canadensis HOM05D006108 ORTHO05D007605 7.8e-13 77.4 61 55.7
Os09g0408550 Oryza sativa ssp. japonica HOM05D006108 ORTHO05D007605 7.8e-13 77.4 68 48.5
Zm00001eb099300 Zea mays HOM05D006108 ORTHO05D007605 3.0e-12 75.5 86 41.9
Rhsim09G0109500 Rhododendron simsii HOM05D006290 ORTHO05D007734 2.5e-11 72.4 53 60.4
arahy.Tifrunner.gnm1.ann1.384K0G Arachis hypogaea HOM05D006108 ORTHO05D007605 1.2e-10 70.1 65 53.8
Sed0027931 Sechium edule HOM05D006108 ORTHO05D007605 2.1e-10 69.3 73 49.3
Peaxi162Scf00015g00844 Petunia axillaris HOM05D006108 ORTHO05D007605 1.8e-09 66.2 69 50.7
Hund05757 Selenicereus undatus HOM05D006108 ORTHO05D007605 1.5e-08 63.2 69 44.9
CAN.G438.131 Capsicum annuum HOM05D006108 ORTHO05D007605 4.4e-08 61.6 46 58.7
ClCG04G011190 Citrullus lanatus HOM05D006108 ORTHO05D007605 5.8e-08 61.2 44 56.8
ClCG08G005220 Citrullus lanatus HOM05D006108 ORTHO05D007605 1.3e-07 60.1 95 37.9
BcaB02g07811 Brassica carinata HOM05D006108 ORTHO05D007605 2.9e-07 58.9 40 67.5
TWI15G1195 Tripterygium wilfordii HOM05D006108 ORTHO05D007605 4.1e-06 55.1 75 37.3
Zm00001eb078160 Zea mays HOM05D000262 ORTHO05D009865 7.1e-06 54.3 93 35.5


User provided reference genes

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