Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g15050 Schrenkiella parvula HOM05D006863 ORTHO05D009101 6.4e-196 687.2 335 100.0
BcaC04g21415 Brassica carinata HOM05D006863 ORTHO05D005487 3.8e-172 608.2 331 90.0
BolC9t56057H Brassica oleracea HOM05D006863 ORTHO05D005487 3.8e-172 608.2 331 90.0
C09p32050 Brassica napus HOM05D006863 ORTHO05D009101 1.9e-171 605.9 331 89.7
Thhalv10004539m.g Eutrema salsugineum HOM05D006863 ORTHO05D009101 1.9e-171 605.9 338 88.2
BraA09t38093Z Brassica rapa HOM05D006863 ORTHO05D005487 2.7e-170 602.1 332 88.3
AT3G25805 Arabidopsis thaliana HOM05D006863 ORTHO05D009101 5.1e-169 597.8 334 86.8
A09p25060 Brassica napus HOM05D006863 ORTHO05D005487 6.6e-169 597.4 332 88.0
AL5G14420 Arabidopsis lyrata HOM05D006863 ORTHO05D009101 1.4e-163 579.7 335 85.1
BcaB07g30631 Brassica carinata HOM05D001825 ORTHO05D009101 5.6e-160 567.8 309 89.6
Carub.0005s0363 Capsella rubella HOM05D006863 ORTHO05D009101 3.4e-157 558.5 336 83.6
Aa31LG2G6540 Aethionema arabicum HOM05D006863 ORTHO05D009101 2.3e-153 545.8 340 78.2
THA.LOC104825705 Tarenaya hassleriana HOM05D006863 ORTHO05D009101 2.2e-140 502.7 337 73.6
Gohir.1Z049378 Gossypium hirsutum HOM05D006863 ORTHO05D009101 1.5e-120 436.8 279 73.8
Gohir.A13G053600 Gossypium hirsutum HOM05D006863 ORTHO05D009101 1.5e-120 436.8 279 73.8
Gohir.D13G071100 Gossypium hirsutum HOM05D006863 ORTHO05D009101 2.6e-120 436.0 279 73.5
Gorai.013G081400 Gossypium raimondii HOM05D006863 ORTHO05D009101 9.7e-120 434.1 279 73.5
Prupe.1G308400 Prunus persica HOM05D006863 ORTHO05D009101 3.5e-117 425.6 309 66.0
RcHm_v2.0_Chr4g0435511 Rosa chinensis HOM05D006863 ORTHO05D009101 7.7e-117 424.5 270 75.6
Dinv04484 Davidia involucrata HOM05D006863 ORTHO05D009101 1.0e-116 424.1 256 75.8
CANSAT56G0117 Cannabis sativa HOM05D006863 ORTHO05D009101 6.5e-116 421.4 280 73.2
Thecc.02G357800 Theobroma cacao HOM05D006863 ORTHO05D009101 1.1e-115 420.6 277 72.6
MD13G1044100 Malus domestica HOM05D006863 ORTHO05D009101 1.5e-115 420.2 290 68.6
Cpa.g.sc1.191 Carica papaya HOM05D006863 ORTHO05D009101 1.9e-115 419.9 301 70.1
Lalb_Chr17g0342021 Lupinus albus HOM05D006863 ORTHO05D009101 1.6e-114 416.8 278 70.5
QL01p043996 Quercus lobata HOM05D006863 ORTHO05D009101 3.6e-114 415.6 253 76.7
CSS0023691 Camellia sinensis var. sinensis HOM05D006863 ORTHO05D009101 1.8e-113 413.3 293 66.2
Ciclev10031676m.g Citrus clementina HOM05D006863 ORTHO05D009101 1.8e-113 413.3 312 66.7
GSVIVG01011920001 Vitis vinifera HOM05D006863 ORTHO05D009101 1.8e-113 413.3 277 70.8
Atru.chr11.1297 Acer truncatum HOM05D006863 ORTHO05D009101 2.3e-113 412.9 290 69.0
ClCG08G005160 Citrullus lanatus HOM05D006863 ORTHO05D009101 8.8e-113 411.0 304 67.4
HanXRQChr17g0552211 Helianthus annuus HOM05D006863 ORTHO05D009101 8.8e-113 411.0 283 67.8
Manes.14G100000 Manihot esculenta HOM05D006863 ORTHO05D009101 1.2e-112 410.6 325 60.9
Potri.010G127200 Populus trichocarpa HOM05D006863 ORTHO05D009101 3.3e-112 409.1 322 64.3
TPR.G38252 Trifolium pratense HOM05D006863 ORTHO05D009101 3.3e-112 409.1 277 71.1
CsaV3_6G003370 Cucumis sativus L. HOM05D006863 ORTHO05D009101 4.4e-112 408.7 273 71.8
Sed0022103 Sechium edule HOM05D006863 ORTHO05D009101 7.5e-112 407.9 272 70.2
arahy.Tifrunner.gnm1.ann1.S0U20I Arachis hypogaea HOM05D006863 ORTHO05D009101 3.7e-111 405.6 278 70.1
Duzib251G0889 Durio zibethinus HOM05D006863 ORTHO05D009101 6.3e-111 404.8 324 63.6
arahy.Tifrunner.gnm1.ann1.2EV214 Arachis hypogaea HOM05D006863 ORTHO05D009101 1.1e-110 404.1 278 69.8
ECA246G5009 Erigeron canadensis HOM05D006863 ORTHO05D009101 1.8e-110 403.3 257 72.4
Medtr5g054910 Medicago truncatula HOM05D006863 ORTHO05D009101 2.4e-110 402.9 272 72.4
Sabra10G0096600 Salix brachista HOM05D006863 ORTHO05D009101 2.4e-110 402.9 281 70.5
FAN12G1275 Fragaria x ananassa HOM05D006863 ORTHO05D009101 3.1e-110 402.5 275 72.4
Lj3C1017T9 Lonicera japonica HOM05D006863 ORTHO05D009101 3.1e-110 402.5 315 64.8
Rhsim09G0110000 Rhododendron simsii HOM05D006863 ORTHO05D009101 9.1e-110 401.0 289 67.5
Lj2g0005111 Lotus japonicus HOM05D006863 ORTHO05D009101 1.2e-109 400.6 265 72.8
Cc11_g10350 Coffea canephora HOM05D006863 ORTHO05D009101 3.5e-109 399.1 279 68.8
Phvul.002G082500 Phaseolus vulgaris HOM05D006863 ORTHO05D009101 5.9e-109 398.3 268 70.9
PGSC0003DMG401015876 Solanum tuberosum HOM05D006863 ORTHO05D009101 7.7e-109 397.9 256 70.7
TAR371G0467 Trochodendron aralioides HOM05D006863 ORTHO05D009101 1.0e-108 397.5 280 66.8
Nitab4.5_0000280g0240 Nicotiana tabacum HOM05D006863 ORTHO05D009101 2.2e-108 396.4 256 70.7
Lsat_1_v5_gn_3_59660 Lactuca sativa HOM05D006863 ORTHO05D009101 3.8e-108 395.6 319 60.5
Migut.L01080 Erythranthe guttata HOM05D006863 ORTHO05D009101 5.0e-108 395.2 258 71.3
Eucgr.G02336 Eucalyptus grandis HOM05D006863 ORTHO05D009101 1.5e-107 393.7 268 70.1
Solyc04g007110.4 Solanum lycopersicum HOM05D006863 ORTHO05D009101 1.5e-107 393.7 257 70.8
Sopen04g002190 Solanum pennellii HOM05D006863 ORTHO05D009101 1.5e-107 393.7 256 70.3
Glyma.08G260300 Glycine max HOM05D006863 ORTHO05D009101 7.2e-107 391.3 267 68.9
Nitab4.5_0009260g0040 Nicotiana tabacum HOM05D006863 ORTHO05D009101 1.2e-106 390.6 256 69.9
PGR119G0754 Punica granatum HOM05D006863 ORTHO05D009101 6.1e-106 388.3 273 70.3
SalBow8G2780 Salvia bowleyana HOM05D006863 ORTHO05D009101 6.1e-106 388.3 253 70.4
VMungo1215G1485 Vigna mungo HOM05D006863 ORTHO05D009101 6.1e-106 388.3 267 67.4
EL10Ac6g14444 Beta vulgaris HOM05D006863 ORTHO05D009101 3.0e-105 386.0 271 69.0
vmacro10546 Vaccinium macrocarpon HOM05D006863 ORTHO05D009101 3.0e-105 386.0 350 56.6
Aqoxy3G00331 Aquilegia oxysepala HOM05D006863 ORTHO05D009101 6.8e-105 384.8 280 66.4
arahy.Tifrunner.gnm1.ann1.PE9U7E Arachis hypogaea HOM05D006863 ORTHO05D009101 2.6e-104 382.9 312 61.5
MSTRG.824 Avicennia marina HOM05D006863 ORTHO05D009101 6.3e-103 378.3 256 68.0
FvH4_4g27661 Fragaria vesca HOM05D006863 ORTHO05D009101 1.1e-102 377.5 226 78.8
AUR62035252 Chenopodium quinoa HOM05D006863 ORTHO05D009101 5.4e-102 375.2 269 67.3
MBI12_g32420_MAGBIO Magnolia biondii HOM05D006863 ORTHO05D009101 9.1e-102 374.4 246 69.1
CiPaw.15G005400 Carya illinoinensis HOM05D006863 ORTHO05D009101 2.7e-101 372.9 225 76.4
Os04g0462300 Oryza sativa ssp. japonica HOM05D006863 ORTHO05D009101 4.5e-101 372.1 252 67.9
CARHR146720 Cardamine hirsuta HOM05D006863 ORTHO05D009101 5.9e-101 371.7 197 89.3
Peaxi162Scf00086g00919 Petunia axillaris HOM05D006863 ORTHO05D009101 5.0e-100 368.6 283 61.1
Ah.03g137770 Amaranthus hybridus HOM05D006863 ORTHO05D005487 3.2e-99 365.9 305 59.7
PSO210G1549 Papaver somniferum HOM05D006863 ORTHO05D009101 2.1e-98 363.2 249 66.7
PSO447G0382 Papaver somniferum HOM05D006863 ORTHO05D009101 3.6e-98 362.5 250 65.6
Actinidia14870 Actinidia chinensis HOM05D006863 ORTHO05D009101 1.8e-97 360.1 245 69.8
HPP92_023480 Vanilla planifolia HOM05D006863 ORTHO05D009101 4.4e-96 355.5 264 64.0
Nn4g23802 Nelumbo nucifera HOM05D006863 ORTHO05D009101 4.5e-93 345.5 225 69.8
SGA_v2.0_scaffold32G13125 Striga asiatica HOM05D006863 ORTHO05D009101 7.8e-93 344.7 292 56.5
DCAR_026725 Daucus carota HOM05D006863 ORTHO05D009101 5.9e-85 318.5 321 50.8
Peaxi162Scf00086g00918 Petunia axillaris HOM05D006863 ORTHO05D009101 1.1e-83 314.3 257 59.1
unitig_22.g6873 Utricularia gibba HOM05D001580 ORTHO05D009101 6.2e-82 308.5 252 59.9
Psat4g144720 Pisum sativum HOM05D006863 ORTHO05D009101 4.4e-80 302.4 206 68.4
Mapoly0073s0050 Marchantia polymorpha HOM05D006863 ORTHO05D009101 7.5e-80 301.6 252 59.9
ATR0141G001 Amborella trichopoda HOM05D006863 ORTHO05D009101 1.3e-79 300.8 285 53.3
TWI75G0199 Tripterygium wilfordii HOM05D006863 ORTHO05D009101 2.4e-78 296.6 182 76.4
Zm00001eb080610 Zea mays HOM05D006863 ORTHO05D009101 1.2e-77 294.3 228 62.7
FAN22G1855 Fragaria x ananassa HOM05D006863 ORTHO05D009101 2.0e-77 293.5 182 74.7
Pp3c1_42010 Physcomitrium patens HOM05D006863 ORTHO05D009101 6.0e-77 292.0 267 53.2
AUR62002895 Chenopodium quinoa HOM05D006863 ORTHO05D009101 3.3e-75 286.2 190 72.1
SEGI_08911 Sequoiadendron giganteum HOM05D006863 ORTHO05D009101 2.8e-74 283.1 231 58.0
SEGI_20209 Sequoiadendron giganteum HOM05D006863 ORTHO05D009101 2.8e-74 283.1 231 58.0
Haze_17458 Corylus avellana HOM05D006863 ORTHO05D009101 9.9e-72 274.6 253 56.5
SMO111G0216 Selaginella moellendorffii HOM05D006863 ORTHO05D009101 8.3e-71 271.6 269 47.2
Sc04g0006570 Simmondsia chinensis HOM05D006863 ORTHO05D009101 1.5e-67 260.8 184 67.9
Glyma.20G042600 Glycine max HOM05D006863 ORTHO05D009101 1.9e-67 260.4 164 71.3
AUR62002896 Chenopodium quinoa HOM05D006863 ORTHO05D009101 9.5e-67 258.1 191 64.4
MELO3C011551.2 Cucumis melo HOM05D006863 ORTHO05D009101 6.2e-66 255.4 168 70.2
AagrBONN_evm.TU.Sc2ySwM_117.2959 Anthoceros agrestis HOM05D006863 ORTHO05D009101 3.9e-60 236.1 215 51.6
CSS0005134 Camellia sinensis var. sinensis HOM05D006863 ORTHO05D009101 5.8e-56 222.2 273 44.7
CSS0013896 Camellia sinensis var. sinensis HOM05D006863 ORTHO05D009101 5.8e-56 222.2 273 44.7
COL.COLO4_07899 Corchorus olitorius HOM05D006863 ORTHO05D009101 4.6e-53 212.6 331 40.8
Ca_27358_v3 Cicer arietinum L. HOM05D006863 ORTHO05D009101 3.0e-52 209.9 195 55.4
Hund25085 Selenicereus undatus HOM05D006863 ORTHO05D009101 1.5e-51 207.6 200 56.0
Gorai.012G052200 Gossypium raimondii HOM05D006863 ORTHO05D009101 4.5e-48 196.1 131 67.9
Gohir.D04G047100 Gossypium hirsutum HOM05D006863 ORTHO05D009101 4.9e-47 192.6 131 67.2
Gohir.D11G195601 Gossypium hirsutum HOM05D006863 ORTHO05D009101 1.4e-41 174.5 131 64.9
SMO358G0636 Selaginella moellendorffii HOM05D006863 ORTHO05D009101 1.5e-40 171.0 242 38.4
CDE11G0826 Ceratophyllum demersum HOM05D006863 ORTHO05D009101 2.7e-29 133.7 181 42.0
MD16G1044900 Malus domestica HOM05D006863 ORTHO05D009101 1.8e-28 131.0 91 67.0
PRCOL_00006784 Prasinoderma coloniale HOM05D006863 ORTHO05D002945 3.3e-27 126.7 276 34.1
MCO04G047 Micromonas commoda HOM05D006863 ORTHO05D002945 2.2e-26 124.0 274 32.5
Oeu042053.1 Olea europaea HOM05D006863 ORTHO05D009101 9.4e-22 108.6 74 66.2
Cre02.g088500 Chlamydomonas reinhardtii HOM05D002745 ORTHO05D002945 3.9e-20 103.2 258 29.8
Sc04g0006560 Simmondsia chinensis HOM05D006863 ORTHO05D009101 2.2e-18 97.4 73 60.3
Haze_17459 Corylus avellana HOM05D006863 ORTHO05D044797 3.2e-06 57.0 82 46.3


User provided reference genes

Program Settings