Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g14870 Schrenkiella parvula HOM05D007408 ORTHO05D009325 1.5e-92 342.8 167 100.0
C07p34420 Brassica napus HOM05D007408 ORTHO05D009325 1.8e-82 309.3 167 89.8
A06p42710 Brassica napus HOM05D007408 ORTHO05D009325 6.8e-82 307.4 167 89.8
BcaC06g33976 Brassica carinata HOM05D007408 ORTHO05D009325 5.8e-81 304.3 167 88.6
Thhalv10005058m.g Eutrema salsugineum HOM05D007408 ORTHO05D009325 2.1e-78 295.8 156 90.4
BraA06t27184Z Brassica rapa HOM05D007408 ORTHO05D009325 1.5e-76 289.7 156 89.7
CARHR146570 Cardamine hirsuta HOM05D007408 ORTHO05D009325 7.3e-76 287.3 167 84.4
AL5G14110 Arabidopsis lyrata HOM05D007408 ORTHO05D009325 1.1e-74 283.5 157 89.8
BcaC03g17274 Brassica carinata HOM05D007408 ORTHO05D009325 2.4e-74 282.3 164 85.4
C02p52180 Brassica napus HOM05D007408 ORTHO05D009325 2.4e-74 282.3 164 85.4
BolC2t11303H Brassica oleracea HOM05D007408 ORTHO05D009325 2.4e-74 282.3 164 85.4
AT3G25597 Arabidopsis thaliana HOM05D007408 ORTHO05D009325 1.2e-73 280.0 158 88.6
BcaB07g30265 Brassica carinata HOM05D007408 ORTHO05D009325 1.9e-71 272.7 165 83.0
BraA02t08410Z Brassica rapa HOM05D007408 ORTHO05D009325 3.5e-70 268.5 156 85.9
Carub.0005s0338 Capsella rubella HOM05D007408 ORTHO05D009325 2.3e-69 265.8 160 85.0
BcaC06g31130 Brassica carinata HOM05D007408 ORTHO05D009325 6.6e-69 264.2 153 84.3
A02p33920 Brassica napus HOM05D007408 ORTHO05D009325 9.3e-63 243.8 143 85.3
BolC7t43970H Brassica oleracea HOM05D007408 ORTHO05D009325 2.1e-46 189.5 101 88.1
THA.LOC104805235 Tarenaya hassleriana HOM05D007408 ORTHO05D009325 1.6e-43 179.9 152 61.2
Glyma.16G099500 Glycine max HOM05D007408 ORTHO05D009325 8.8e-21 104.4 152 40.1
Potri.008G111500 Populus trichocarpa HOM05D007408 ORTHO05D009325 1.1e-20 104.0 149 42.3
Cpa.g.sc1.248 Carica papaya HOM05D007408 ORTHO05D009325 2.6e-20 102.8 117 49.6
Sabra08G0084200 Salix brachista HOM05D007408 ORTHO05D009325 2.6e-20 102.8 142 44.4
Cfa008792 Carpinus fangiana HOM05D007408 ORTHO05D009325 7.4e-20 101.3 155 41.9
Gorai.008G188700 Gossypium raimondii HOM05D007408 ORTHO05D009325 9.7e-20 100.9 160 41.9
Gohir.D12G176300 Gossypium hirsutum HOM05D007408 ORTHO05D009325 1.3e-19 100.5 160 41.2
MD13G1050800 Malus domestica HOM05D007408 ORTHO05D009325 1.3e-19 100.5 149 45.6
Haze_11804 Corylus avellana HOM05D007408 ORTHO05D009325 2.2e-19 99.8 119 47.1
RcHm_v2.0_Chr4g0436431 Rosa chinensis HOM05D007408 ORTHO05D009325 3.7e-19 99.0 150 46.0
PGR119G0146 Punica granatum HOM05D007408 ORTHO05D009325 6.3e-19 98.2 151 41.1
Manes.06G075900 Manihot esculenta HOM05D007408 ORTHO05D009325 8.2e-19 97.8 149 42.3
Atru.chr11.1432 Acer truncatum HOM05D007408 ORTHO05D009325 2.4e-18 96.3 153 40.5
Oeu024124.1 Olea europaea HOM05D007408 ORTHO05D009325 2.4e-18 96.3 133 44.4
Phvul.003G281600 Phaseolus vulgaris HOM05D007408 ORTHO05D009325 5.3e-18 95.1 150 43.3
Prupe.1G301300 Prunus persica HOM05D007408 ORTHO05D009325 9.1e-18 94.4 152 41.4
Gohir.A12G173800 Gossypium hirsutum HOM05D007408 ORTHO05D009325 1.6e-17 93.6 155 38.1
THA.LOC104822179 Tarenaya hassleriana HOM05D007408 ORTHO05D009325 1.6e-17 93.6 124 43.5
Eucgr.B03072 Eucalyptus grandis HOM05D007408 ORTHO05D009325 2.0e-17 93.2 153 37.9
Cc11_g10990 Coffea canephora HOM05D007408 ORTHO05D009325 2.6e-17 92.8 125 45.6
Solyc05g010130.1 Solanum lycopersicum HOM05D007408 ORTHO05D009325 5.9e-17 91.7 111 44.1
SGA_v2.0_scaffold36G14509 Striga asiatica HOM05D007408 ORTHO05D009325 7.7e-17 91.3 138 39.9
CiPaw.06G098200 Carya illinoinensis HOM05D007408 ORTHO05D009325 1.0e-16 90.9 161 40.4
DCAR_026703 Daucus carota HOM05D002818 ORTHO05D003244 1.7e-16 90.1 120 39.2
Lj4g0027659 Lotus japonicus HOM05D007408 ORTHO05D009325 1.7e-16 90.1 150 38.7
TWI79G0837 Tripterygium wilfordii HOM05D007408 ORTHO05D009325 1.7e-16 90.1 155 40.6
FAN17G1226 Fragaria x ananassa HOM05D000085 ORTHO05D000274 2.2e-16 89.7 141 44.0
FAN07G2148 Fragaria x ananassa HOM05D000085 ORTHO05D000274 2.9e-16 89.4 149 43.0
FAN22G2286 Fragaria x ananassa HOM05D000227 ORTHO05D001491 5.0e-16 88.6 144 43.1
CANSAT64G2960 Cannabis sativa HOM05D007408 ORTHO05D009325 8.5e-16 87.8 137 41.6
FAN12G0389 Fragaria x ananassa HOM05D000085 ORTHO05D000274 8.5e-16 87.8 140 43.6
VMungo0251G2162 Vigna mungo HOM05D007408 ORTHO05D009325 1.5e-15 87.0 125 43.2
Lalb_Chr20g0122411 Lupinus albus HOM05D007408 ORTHO05D009325 2.5e-15 86.3 124 41.9
TAR629G0610 Trochodendron aralioides HOM05D007408 ORTHO05D009325 3.2e-15 85.9 151 37.7
HanXRQChr17g0551421 Helianthus annuus HOM05D007408 ORTHO05D009325 4.2e-15 85.5 122 43.4
Sp5g23800 Schrenkiella parvula HOM05D007408 ORTHO05D009325 9.4e-15 84.3 169 33.7
Thecc.02G364900 Theobroma cacao HOM05D007408 ORTHO05D009325 9.4e-15 84.3 127 43.3
Ciclev10033573m.g Citrus clementina HOM05D007408 ORTHO05D009325 1.2e-14 84.0 111 41.4
Migut.L01119 Erythranthe guttata HOM05D007408 ORTHO05D009325 1.2e-14 84.0 140 38.6
TPR.G24816 Trifolium pratense HOM05D007408 ORTHO05D009325 1.2e-14 84.0 155 38.1
Lsat_1_v5_gn_3_60200 Lactuca sativa HOM05D007408 ORTHO05D009325 2.1e-14 83.2 123 39.8
Ah.02g127260 Amaranthus hybridus HOM05D007408 ORTHO05D009325 3.6e-14 82.4 154 33.8
AL1G39610 Arabidopsis lyrata HOM05D007408 ORTHO05D009325 3.6e-14 82.4 115 40.0
CARHR061510 Cardamine hirsuta HOM05D007408 ORTHO05D009325 3.6e-14 82.4 131 32.8
A08p27160 Brassica napus HOM05D007408 ORTHO05D009325 6.1e-14 81.6 115 40.9
C06p41170 Brassica napus HOM05D000085 ORTHO05D000274 1.0e-13 80.9 167 35.3
BcaC08g46321 Brassica carinata HOM05D000085 ORTHO05D000274 1.4e-13 80.5 167 34.7
BolC6t39308H Brassica oleracea HOM05D000085 ORTHO05D000274 1.4e-13 80.5 167 34.7
HanXRQChr15g0475971 Helianthus annuus HOM05D007408 ORTHO05D009325 1.4e-13 80.5 122 41.0
Medtr8g069910 Medicago truncatula HOM05D007408 ORTHO05D009325 1.4e-13 80.5 141 35.5
BcaB03g15446 Brassica carinata HOM05D007408 ORTHO05D009325 1.8e-13 80.1 155 33.5
BcaB03g15828 Brassica carinata HOM05D007408 ORTHO05D009325 1.8e-13 80.1 114 38.6
BraA08t34661Z Brassica rapa HOM05D007408 ORTHO05D009325 4.0e-13 79.0 115 40.0
arahy.Tifrunner.gnm1.ann1.24G1QJ Arachis hypogaea HOM05D007408 ORTHO05D009325 6.7e-13 78.2 144 33.3
C03p72700 Brassica napus HOM05D007408 ORTHO05D009325 6.7e-13 78.2 115 40.0
C06p37420 Brassica napus HOM05D007408 ORTHO05D009325 6.7e-13 78.2 128 37.5
BolC3t19568H Brassica oleracea HOM05D007408 ORTHO05D009325 6.7e-13 78.2 115 40.0
AT1G26140 Arabidopsis thaliana HOM05D007408 ORTHO05D009325 1.2e-12 77.4 115 40.9
AT1G68700 Arabidopsis thaliana HOM05D007408 ORTHO05D009325 1.2e-12 77.4 119 39.5
A07p35100 Brassica napus HOM05D000085 ORTHO05D000274 1.2e-12 77.4 159 35.2
A09p39710 Brassica napus HOM05D007408 ORTHO05D009325 1.2e-12 77.4 112 38.4
BraA07t31103Z Brassica rapa HOM05D000085 ORTHO05D000274 1.2e-12 77.4 159 35.2
BraA09t39470Z Brassica rapa HOM05D007408 ORTHO05D009325 1.2e-12 77.4 112 38.4
CsaV3_2G010890 Cucumis sativus L. HOM05D007408 ORTHO05D009325 2.0e-12 76.6 152 37.5
BraA07t30814Z Brassica rapa HOM05D007408 ORTHO05D009325 2.6e-12 76.3 109 39.4
SalBow8G1270 Salvia bowleyana HOM05D007408 ORTHO05D009325 2.6e-12 76.3 146 40.4
SalBow8G3082 Salvia bowleyana HOM05D007408 ORTHO05D009325 2.6e-12 76.3 146 40.4
A07p31850 Brassica napus HOM05D007408 ORTHO05D009325 3.3e-12 75.9 109 39.4
CARHR025780 Cardamine hirsuta HOM05D007408 ORTHO05D009325 3.3e-12 75.9 114 42.1
Thhalv10009687m.g Eutrema salsugineum HOM05D007408 ORTHO05D009325 3.3e-12 75.9 124 40.3
Carub.0001s2482 Capsella rubella HOM05D007408 ORTHO05D009325 4.4e-12 75.5 121 39.7
Sp1g22520 Schrenkiella parvula HOM05D007408 ORTHO05D009325 9.7e-12 74.3 115 40.9
BcaC05g26429 Brassica carinata HOM05D007408 ORTHO05D009325 8.2e-11 71.2 118 40.7
C05p24760 Brassica napus HOM05D007408 ORTHO05D009325 8.2e-11 71.2 118 40.7
PSO782G1144 Papaver somniferum HOM05D007408 ORTHO05D009325 1.4e-10 70.5 116 37.9
Sc11g0002930 Simmondsia chinensis HOM05D007408 ORTHO05D009325 1.4e-10 70.5 150 36.0
Psat4g113200 Pisum sativum HOM05D007408 ORTHO05D009325 4.1e-10 68.9 146 33.6
BolC6t38845H Brassica oleracea HOM05D000085 ORTHO05D000274 7.0e-10 68.2 121 36.4
Carub.0002s1524 Capsella rubella HOM05D007408 ORTHO05D009325 9.1e-10 67.8 124 32.3
HanXRQChr12g0365241 Helianthus annuus HOM05D007408 ORTHO05D009325 2.0e-09 66.6 135 31.9
MELO3C020393.2 Cucumis melo HOM05D007408 ORTHO05D009325 5.0e-08 62.0 147 32.0
Manes.14G095101 Manihot esculenta HOM05D007408 ORTHO05D009325 5.0e-08 62.0 108 38.0
Aqoxy3G03838 Aquilegia oxysepala HOM05D007408 ORTHO05D009325 2.5e-07 59.7 153 32.7
Sed0018728 Sechium edule HOM05D007408 ORTHO05D009325 4.2e-07 58.9 119 37.0
HPP92_003100 Vanilla planifolia HOM05D007408 ORTHO05D009325 4.2e-07 58.9 43 58.1
HPP92_003114 Vanilla planifolia HOM05D007408 ORTHO05D009325 1.2e-06 57.4 110 36.4
BcaC08g43155 Brassica carinata HOM05D007408 ORTHO05D009325 6.1e-06 55.1 112 34.8


User provided reference genes

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