Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g14860 Schrenkiella parvula HOM05D004568 ORTHO05D005343 4.7e-150 535.0 390 100.0
Thhalv10004268m.g Eutrema salsugineum HOM05D004568 ORTHO05D005343 2.4e-114 416.4 441 66.0
BolC2t11302H Brassica oleracea HOM05D004568 ORTHO05D005343 3.9e-96 355.9 425 55.1
BraA02t08408Z Brassica rapa HOM05D004568 ORTHO05D005343 1.9e-95 353.6 415 59.8
BcaC03g17273 Brassica carinata HOM05D004568 ORTHO05D005343 6.5e-91 338.6 416 54.1
BcaC06g31131 Brassica carinata HOM05D004568 ORTHO05D005343 3.0e-88 329.7 438 64.4
AT3G25590 Arabidopsis thaliana HOM05D004568 ORTHO05D005343 5.1e-88 328.9 448 53.8
BcaB07g30266 Brassica carinata HOM05D004568 ORTHO05D005343 1.9e-87 327.0 419 54.9
AL5G14100 Arabidopsis lyrata HOM05D004568 ORTHO05D005343 1.6e-86 323.9 448 57.6
BcaB07g30637 Brassica carinata HOM05D004568 ORTHO05D005343 4.1e-85 319.3 418 60.5
BolC9t56047H Brassica oleracea HOM05D004568 ORTHO05D005343 9.0e-85 318.2 409 56.5
A09p24900 Brassica napus HOM05D004568 ORTHO05D005343 7.7e-84 315.1 398 53.0
C09p31920 Brassica napus HOM05D004568 ORTHO05D005343 2.2e-83 313.5 409 56.0
BraA06t27185Z Brassica rapa HOM05D004568 ORTHO05D005343 3.8e-83 312.8 416 56.5
Aa31LG2G6720 Aethionema arabicum HOM05D004568 ORTHO05D005343 6.5e-83 312.0 479 52.0
A02p33910 Brassica napus HOM05D004568 ORTHO05D005343 3.2e-82 309.7 397 57.7
A06p42720 Brassica napus HOM05D004568 ORTHO05D005343 1.6e-81 307.4 416 55.5
C02p52170 Brassica napus HOM05D004568 ORTHO05D005343 3.6e-81 306.2 415 50.8
BcaC04g21427 Brassica carinata HOM05D004568 ORTHO05D005343 2.3e-80 303.5 396 58.1
BcaC06g33977 Brassica carinata HOM05D004568 ORTHO05D005343 6.7e-80 302.0 412 53.4
C07p34410 Brassica napus HOM05D004568 ORTHO05D005343 3.3e-79 299.7 418 52.6
BolC7t43969H Brassica oleracea HOM05D004568 ORTHO05D005343 7.4e-79 298.5 418 52.4
Carub.0005s0337 Capsella rubella HOM05D004568 ORTHO05D005343 1.0e-72 278.1 428 55.4
THA.LOC104805234 Tarenaya hassleriana HOM05D004568 ORTHO05D005343 4.8e-62 242.7 466 51.1
BraA09t38078Z Brassica rapa HOM05D004568 ORTHO05D005343 5.9e-60 235.7 232 62.9
BcaC04g21428 Brassica carinata HOM05D004568 ORTHO05D005343 8.5e-59 231.9 361 44.9
THA.LOC104824044 Tarenaya hassleriana HOM05D004568 ORTHO05D005343 1.2e-57 228.0 453 50.6
Thecc.09G210800 Theobroma cacao HOM05D004568 ORTHO05D005343 1.6e-41 174.5 419 39.4
Cpa.g.sc1.257 Carica papaya HOM05D004568 ORTHO05D005343 4.7e-41 172.9 430 38.6
Duzib251G0342 Durio zibethinus HOM05D004568 ORTHO05D005343 1.5e-39 167.9 418 39.2
Duzib168G1705 Durio zibethinus HOM05D004568 ORTHO05D005343 2.9e-38 163.7 420 39.5
Atru.chr11.1442 Acer truncatum HOM05D004568 ORTHO05D005343 3.7e-38 163.3 419 34.8
Atru.chr11.1472 Acer truncatum HOM05D004568 ORTHO05D005343 3.7e-38 163.3 419 34.8
Thecc.02G315200 Theobroma cacao HOM05D004568 ORTHO05D005343 5.4e-37 159.5 416 33.7
Ciclev10033580m.g Citrus clementina HOM05D004568 ORTHO05D005343 5.9e-36 156.0 434 42.2
Gorai.005G149300 Gossypium raimondii HOM05D004568 ORTHO05D005343 1.0e-35 155.2 425 38.6
Duzib268G1242 Durio zibethinus HOM05D004568 ORTHO05D005343 3.9e-35 153.3 420 39.0
Gohir.D02G133400 Gossypium hirsutum HOM05D004568 ORTHO05D005343 5.6e-34 149.4 426 38.5
Cfa008803 Carpinus fangiana HOM05D004568 ORTHO05D005343 1.2e-33 148.3 419 33.4
Gohir.A03G108200 Gossypium hirsutum HOM05D004568 ORTHO05D005343 2.1e-33 147.5 425 38.1
COL.COLO4_34999 Corchorus olitorius HOM05D004568 ORTHO05D005343 3.6e-33 146.7 447 37.8
VMungo1215G2036 Vigna mungo HOM05D004568 ORTHO05D005343 3.6e-33 146.7 417 35.3
Lj2g0022626 Lotus japonicus HOM05D004568 ORTHO05D005343 2.3e-32 144.1 422 32.7
MD13G1052200 Malus domestica HOM05D004568 ORTHO05D005343 2.3e-32 144.1 409 36.9
QL03p044380 Quercus lobata HOM05D004568 ORTHO05D005343 4.0e-32 143.3 417 32.4
ClCG05G023290 Citrullus lanatus HOM05D004568 ORTHO05D005343 6.8e-32 142.5 421 38.5
Prupe.1G299900 Prunus persica HOM05D004568 ORTHO05D005343 6.8e-32 142.5 433 37.6
COL.COLO4_27716 Corchorus olitorius HOM05D004568 ORTHO05D005343 4.4e-31 139.8 427 34.0
MD16G1057700 Malus domestica HOM05D004568 ORTHO05D005343 7.5e-31 139.0 417 35.7
CANSAT64G0418 Cannabis sativa HOM05D004568 ORTHO05D005343 9.8e-31 138.7 433 35.1
Lalb_Chr10g0099511 Lupinus albus HOM05D004568 ORTHO05D005343 1.7e-30 137.9 422 35.3
CiPaw.05G118300 Carya illinoinensis HOM05D004568 ORTHO05D005343 3.7e-30 136.7 417 34.8
MELO3C012188.2 Cucumis melo HOM05D004568 ORTHO05D005343 6.4e-30 136.0 418 38.5
Ca_05120_v3 Cicer arietinum L. HOM05D004568 ORTHO05D005343 8.3e-30 135.6 418 36.4
Eucgr.G02393 Eucalyptus grandis HOM05D004568 ORTHO05D005343 2.4e-29 134.0 440 38.0
Sed0022479 Sechium edule HOM05D004568 ORTHO05D005343 2.4e-29 134.0 421 34.4
CsaV3_5G033720 Cucumis sativus L. HOM05D004568 ORTHO05D005343 5.4e-29 132.9 426 38.0
CSS0002717 Camellia sinensis var. sinensis HOM05D004568 ORTHO05D005343 2.0e-28 131.0 401 36.7
Gohir.A12G157850 Gossypium hirsutum HOM05D004568 ORTHO05D005343 2.7e-28 130.6 386 31.1
Gohir.A12G157951 Gossypium hirsutum HOM05D004568 ORTHO05D005343 2.7e-28 130.6 386 31.1
Gohir.D12G160800 Gossypium hirsutum HOM05D004568 ORTHO05D005343 2.7e-28 130.6 385 31.4
Sabra10G0102200 Salix brachista HOM05D004568 ORTHO05D005343 1.0e-27 128.6 436 35.1
Medtr6g472100 Medicago truncatula HOM05D004568 ORTHO05D005343 1.7e-27 127.9 407 42.0
RcHm_v2.0_Chr4g0436671 Rosa chinensis HOM05D004568 ORTHO05D005343 1.7e-27 127.9 418 36.6
TWI75G0122 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 3.0e-27 127.1 409 34.0
TWI79G0507 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 3.0e-27 127.1 410 33.2
Gorai.008G173800 Gossypium raimondii HOM05D004568 ORTHO05D005343 6.6e-27 125.9 385 33.2
Potri.008G109600 Populus trichocarpa HOM05D004568 ORTHO05D005343 6.6e-27 125.9 437 33.2
FvH4_4g28580 Fragaria vesca HOM05D004568 ORTHO05D005343 1.1e-26 125.2 255 45.5
FAN07G0048 Fragaria x ananassa HOM05D004568 ORTHO05D005343 1.1e-26 125.2 255 45.5
FAN12G0798 Fragaria x ananassa HOM05D004568 ORTHO05D005343 1.1e-26 125.2 255 45.5
FAN22G1274 Fragaria x ananassa HOM05D004568 ORTHO05D005343 1.1e-26 125.2 255 45.5
Potri.010G133600 Populus trichocarpa HOM05D004568 ORTHO05D005343 1.1e-26 125.2 431 34.8
TPR.G2653 Trifolium pratense HOM05D004568 ORTHO05D005343 1.5e-26 124.8 242 51.7
Potri.T062072 Populus trichocarpa HOM05D004568 ORTHO05D005343 1.9e-26 124.4 437 33.0
FAN17G1809 Fragaria x ananassa HOM05D004568 ORTHO05D005343 3.3e-26 123.6 255 45.1
Gohir.A13G213600 Gossypium hirsutum HOM05D004568 ORTHO05D005343 2.8e-25 120.6 393 36.1
Gohir.D13G217400 Gossypium hirsutum HOM05D004568 ORTHO05D005343 6.2e-25 119.4 393 33.1
Gorai.013G247900 Gossypium raimondii HOM05D004568 ORTHO05D005343 6.2e-25 119.4 393 33.1
Manes.14G094400 Manihot esculenta HOM05D004568 ORTHO05D005343 2.0e-23 114.4 426 33.3
Sabra08G0083400 Salix brachista HOM05D004568 ORTHO05D005343 2.0e-23 114.4 408 31.1
Manes.06G076600 Manihot esculenta HOM05D004568 ORTHO05D005343 2.6e-23 114.0 422 31.0
Psat2g096280 Pisum sativum HOM05D004568 ORTHO05D005343 2.6e-23 114.0 406 38.4
CiPaw.06G097400 Carya illinoinensis HOM05D004568 ORTHO05D005343 9.8e-23 112.1 422 32.9
PGR119G0824 Punica granatum HOM05D004568 ORTHO05D005343 2.2e-22 110.9 423 36.9
Hma1.2p1_1459F.1_g284900 Hydrangea macrophylla HOM05D004568 ORTHO05D005343 3.7e-22 110.2 394 29.9
Glyma.02G128700 Glycine max HOM05D004568 ORTHO05D005343 8.3e-22 109.0 451 32.6
Hma1.2p1_1424F.1_g282720 Hydrangea macrophylla HOM05D004568 ORTHO05D005343 1.1e-21 108.6 392 29.8
Dinv16554 Davidia involucrata HOM05D004568 ORTHO05D005343 1.9e-21 107.8 256 40.6
TWI31G1373 Tripterygium wilfordii HOM05D004568 ORTHO05D005343 7.1e-21 105.9 388 29.6
Oeu033529.1 Olea europaea HOM05D004568 ORTHO05D005343 1.2e-20 105.1 394 32.2
GSVIVG01012027001 Vitis vinifera HOM05D004568 ORTHO05D005343 1.6e-20 104.8 254 37.8
Sc04g0007050 Simmondsia chinensis HOM05D004568 ORTHO05D005343 4.6e-20 103.2 401 28.9
Phvul.003G034500 Phaseolus vulgaris HOM05D004568 ORTHO05D005343 1.3e-19 101.7 345 29.9
Glyma.04G152800 Glycine max HOM05D004568 ORTHO05D005343 2.3e-19 100.9 431 36.4
Lsat_1_v5_gn_3_58841 Lactuca sativa HOM05D004568 ORTHO05D005343 3.9e-19 100.1 267 41.9
Peaxi162Scf00208g00131 Petunia axillaris HOM05D004568 ORTHO05D005343 3.9e-19 100.1 252 35.7
PGSC0003DMG400002843 Solanum tuberosum HOM05D004568 ORTHO05D005343 4.3e-18 96.7 246 41.5
ECA246G3306 Erigeron canadensis HOM05D004568 ORTHO05D005343 7.3e-18 95.9 259 42.1
DCAR_026699 Daucus carota HOM05D004568 ORTHO05D005343 9.5e-18 95.5 391 33.0
Solyc04g005920.1 Solanum lycopersicum HOM05D004568 ORTHO05D005343 9.5e-18 95.5 246 41.1
Sopen04g001970 Solanum pennellii HOM05D004568 ORTHO05D005343 1.2e-17 95.1 246 41.1
Migut.L01125 Erythranthe guttata HOM05D004568 ORTHO05D005343 3.6e-17 93.6 405 31.9
Aqoxy3G03818 Aquilegia oxysepala HOM05D004568 ORTHO05D005343 8.1e-17 92.4 410 35.4
HanXRQChr17g0551111 Helianthus annuus HOM05D004568 ORTHO05D005343 1.8e-16 91.3 260 41.2
HanXRQChr17g0551511 Helianthus annuus HOM05D004568 ORTHO05D005343 1.8e-16 91.3 260 41.2
SalBow8G3235 Salvia bowleyana HOM05D004568 ORTHO05D005343 3.1e-16 90.5 384 28.4
SalBow8G5572 Salvia bowleyana HOM05D004568 ORTHO05D005343 3.1e-16 90.5 384 28.4
CSS0045744 Camellia sinensis var. sinensis HOM05D004568 ORTHO05D005343 5.2e-16 89.7 242 35.1
PSO782G5402 Papaver somniferum HOM05D004568 ORTHO05D005343 6.8e-16 89.4 424 30.2
Nitab4.5_0001554g0060 Nicotiana tabacum HOM05D004568 ORTHO05D005343 8.9e-16 89.0 258 34.1
Nitab4.5_0004681g0010 Nicotiana tabacum HOM05D004568 ORTHO05D005343 3.4e-15 87.0 259 34.0
PSO063G5818 Papaver somniferum HOM05D004568 ORTHO05D005343 4.4e-15 86.7 431 29.9
TAR622G0675 Trochodendron aralioides HOM05D004568 ORTHO05D005343 8.4e-14 82.4 269 40.5
arahy.Tifrunner.gnm1.ann1.35X7C5 Arachis hypogaea HOM05D004568 ORTHO05D005343 9.2e-13 79.0 263 36.5
PGSC0003DMG400007516 Solanum tuberosum HOM05D004568 ORTHO05D005343 1.6e-12 78.2 384 26.0
Dinv27412 Davidia involucrata HOM05D006650 ORTHO05D008401 2.7e-12 77.4 336 28.3
HanXRQChr12g0365221 Helianthus annuus HOM05D004568 ORTHO05D005343 3.5e-12 77.0 269 30.9
BcaC04g21425 Brassica carinata HOM05D004568 ORTHO05D005343 4.6e-12 76.6 203 32.5
Haze_11818 Corylus avellana HOM05D004568 ORTHO05D005343 4.6e-12 76.6 267 31.1
SGA_v2.0_scaffold16G07859 Striga asiatica HOM05D004568 ORTHO05D005343 4.6e-12 76.6 256 30.5
TAR374G1393 Trochodendron aralioides HOM05D004568 ORTHO05D005343 4.6e-12 76.6 259 30.1
arahy.Tifrunner.gnm1.ann1.Y3DNXR Arachis hypogaea HOM05D004568 ORTHO05D005343 6.0e-12 76.3 269 37.9
Rhsim09G0116400 Rhododendron simsii HOM05D004568 ORTHO05D005343 6.0e-12 76.3 410 29.8
Rhsim09G0116100 Rhododendron simsii HOM05D004568 ORTHO05D005343 7.8e-12 75.9 395 29.6
SGA_v2.0_scaffold36G14507 Striga asiatica HOM05D004568 ORTHO05D005343 1.3e-11 75.1 248 30.2
EL10Ac6g14584 Beta vulgaris HOM05D004568 ORTHO05D005343 2.3e-11 74.3 262 32.4
Cc11_g11080 Coffea canephora HOM05D004568 ORTHO05D005343 2.3e-11 74.3 277 36.1
Nn3g17622 Nelumbo nucifera HOM05D004568 ORTHO05D005343 2.3e-11 74.3 218 33.0
Solyc05g010450.1 Solanum lycopersicum HOM05D004568 ORTHO05D005343 6.6e-11 72.8 382 25.1
Sopen05g006240 Solanum pennellii HOM05D004568 ORTHO05D005343 6.6e-11 72.8 382 25.1
Lsat_1_v5_gn_8_37860 Lactuca sativa HOM05D004568 ORTHO05D005343 1.9e-10 71.2 256 37.9
DCAR_030135 Daucus carota HOM05D004568 ORTHO05D005343 3.3e-10 70.5 378 25.4
unitig_747.g21193 Utricularia gibba HOM05D004568 ORTHO05D005343 8.1e-09 65.9 225 30.2
AUR62039200 Chenopodium quinoa HOM05D004568 ORTHO05D005343 1.4e-08 65.1 413 26.2
Haze_11819 Corylus avellana HOM05D004568 ORTHO05D005343 1.4e-08 65.1 95 41.1
AUR62019434 Chenopodium quinoa HOM05D000052 ORTHO05D000046 5.2e-08 63.2 267 28.5
CDE04G2972 Ceratophyllum demersum HOM05D004568 ORTHO05D005343 3.4e-07 60.5 204 28.9
Nitab4.5_0012448g0010 Nicotiana tabacum HOM05D004568 ORTHO05D005343 5.8e-07 59.7 180 33.3
HanXRQChr08g0214641 Helianthus annuus HOM05D004568 ORTHO05D005343 1.3e-06 58.5 256 30.9
HanXRQChr08g0214671 Helianthus annuus HOM05D004568 ORTHO05D005343 1.3e-06 58.5 256 30.9
AUR62007782 Chenopodium quinoa HOM05D004568 ORTHO05D005343 1.7e-06 58.2 255 29.4


User provided reference genes

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