Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g14650 Schrenkiella parvula HOM05D005726 ORTHO05D001733 5.9e-71 270.8 138 100.0
BcaC04g23031 Brassica carinata HOM05D005726 ORTHO05D001733 1.5e-63 246.1 138 88.4
C09p12890 Brassica napus HOM05D005726 ORTHO05D001733 1.5e-63 246.1 138 88.4
BolC9t54179H Brassica oleracea HOM05D005726 ORTHO05D001733 1.7e-62 242.7 138 87.7
A09p10920 Brassica napus HOM05D005726 ORTHO05D001733 6.5e-62 240.7 138 85.5
BraA09t36732Z Brassica rapa HOM05D005726 ORTHO05D001733 6.5e-62 240.7 138 85.5
BcaB07g31777 Brassica carinata HOM05D005726 ORTHO05D001733 7.2e-61 237.3 138 84.1
AL8G19700 Arabidopsis lyrata HOM05D005726 ORTHO05D001733 2.0e-58 229.2 138 81.2
AT5G42146 Arabidopsis thaliana HOM05D005726 ORTHO05D001733 3.3e-58 228.4 138 81.2
AL8G19720 Arabidopsis lyrata HOM05D005726 ORTHO05D001733 7.4e-58 227.3 138 80.4
Carub.0008s0720 Capsella rubella HOM05D005726 ORTHO05D001733 1.0e-54 216.9 138 77.5
CARHR284740 Cardamine hirsuta HOM05D005726 ORTHO05D001733 2.3e-51 205.7 138 71.7
C02p51810 Brassica napus HOM05D005726 ORTHO05D001733 7.0e-48 194.1 116 89.7
Thhalv10015257m.g Eutrema salsugineum HOM05D005726 ORTHO05D001733 1.2e-47 193.4 139 72.7
A02p33660 Brassica napus HOM05D005726 ORTHO05D001733 3.5e-47 191.8 116 88.8
BraA02t08386Z Brassica rapa HOM05D005726 ORTHO05D001733 7.7e-47 190.7 116 87.9
BcaC03g17246 Brassica carinata HOM05D005726 ORTHO05D001733 1.3e-46 189.9 114 89.5
BolC2t11266H Brassica oleracea HOM05D005726 ORTHO05D001733 1.3e-46 189.9 114 89.5
THA.LOC104821582 Tarenaya hassleriana HOM05D005726 ORTHO05D001733 1.2e-44 183.3 138 65.2
Thecc.08G044700 Theobroma cacao HOM05D005726 ORTHO05D001733 1.6e-23 113.2 137 43.8
CiPaw.07G149600 Carya illinoinensis HOM05D005726 ORTHO05D001733 3.5e-23 112.1 137 43.8
MD05G1115600 Malus domestica HOM05D005726 ORTHO05D001733 3.5e-23 112.1 138 47.1
Nn1g05896 Nelumbo nucifera HOM05D005726 ORTHO05D001733 3.9e-22 108.6 137 40.9
Sed0021833 Sechium edule HOM05D005726 ORTHO05D001733 3.9e-22 108.6 137 40.9
Cfa013952 Carpinus fangiana HOM05D005726 ORTHO05D001733 1.1e-21 107.1 139 41.7
QL02p011637 Quercus lobata HOM05D005726 ORTHO05D001733 1.5e-21 106.7 139 43.2
Atru.chr5.3224 Acer truncatum HOM05D005726 ORTHO05D001733 3.3e-21 105.5 136 43.4
RcHm_v2.0_Chr6g0245271 Rosa chinensis HOM05D005726 ORTHO05D001733 3.3e-21 105.5 142 42.3
TAR625G1501 Trochodendron aralioides HOM05D005726 ORTHO05D001733 5.6e-21 104.8 139 43.2
Gorai.010G004200 Gossypium raimondii HOM05D005726 ORTHO05D001733 7.3e-21 104.4 137 41.6
TAR376G0138 Trochodendron aralioides HOM05D005726 ORTHO05D001733 1.2e-20 103.6 127 46.5
Gohir.D06G006900 Gossypium hirsutum HOM05D005726 ORTHO05D001733 1.6e-20 103.2 137 40.9
PSO170G6562 Papaver somniferum HOM05D005726 ORTHO05D001733 1.6e-20 103.2 152 39.5
Gohir.A06G004000 Gossypium hirsutum HOM05D005726 ORTHO05D001733 2.8e-20 102.4 137 40.1
Haze_22635 Corylus avellana HOM05D005726 ORTHO05D001733 4.7e-20 101.7 139 40.3
Cpa.g.sc26.44 Carica papaya HOM05D005726 ORTHO05D001733 6.1e-20 101.3 130 43.8
TWI56G0219 Tripterygium wilfordii HOM05D005726 ORTHO05D001733 1.0e-19 100.5 140 42.9
Ciclev10003161m.g Citrus clementina HOM05D005726 ORTHO05D001733 1.4e-19 100.1 138 44.2
Prupe.8G160400 Prunus persica HOM05D005726 ORTHO05D001733 1.4e-19 100.1 138 45.7
Atru.chr13.290 Acer truncatum HOM05D005726 ORTHO05D001733 1.8e-19 99.8 138 39.1
Manes.05G147300 Manihot esculenta HOM05D005726 ORTHO05D001733 1.8e-19 99.8 137 41.6
CiPaw.05G077000 Carya illinoinensis HOM05D005726 ORTHO05D001733 8.9e-19 97.4 137 38.7
Thecc.02G067200 Theobroma cacao HOM05D005726 ORTHO05D001733 8.9e-19 97.4 139 38.1
Glyma.04G024200 Glycine max HOM05D005726 ORTHO05D001733 1.2e-18 97.1 144 39.6
COL.COLO4_17253 Corchorus olitorius HOM05D005726 ORTHO05D001733 1.5e-18 96.7 135 37.8
CANSAT01G1229 Cannabis sativa HOM05D005726 ORTHO05D001733 2.0e-18 96.3 145 35.2
Cfa005182 Carpinus fangiana HOM05D005726 ORTHO05D001733 2.0e-18 96.3 140 39.3
MD10G1118100 Malus domestica HOM05D005726 ORTHO05D001733 2.0e-18 96.3 136 42.6
MBI05_g33718_MAGBIO Magnolia biondii HOM05D005726 ORTHO05D001733 3.4e-18 95.5 137 38.7
Migut.N01283 Erythranthe guttata HOM05D005726 ORTHO05D001733 4.4e-18 95.1 139 39.6
Haze_02200 Corylus avellana HOM05D005726 ORTHO05D001733 7.5e-18 94.4 140 38.6
Nn5g30142 Nelumbo nucifera HOM05D005726 ORTHO05D001733 7.5e-18 94.4 137 38.7
Duzib132G0889 Durio zibethinus HOM05D005726 ORTHO05D001733 1.3e-17 93.6 133 37.6
MD08G1013100 Malus domestica HOM05D005726 ORTHO05D001733 2.2e-17 92.8 135 43.7
Potri.002G022100 Populus trichocarpa HOM05D005726 ORTHO05D001733 2.2e-17 92.8 138 37.0
Potri.009G129301 Populus trichocarpa HOM05D005726 ORTHO05D001733 2.2e-17 92.8 139 36.7
Gohir.A12G039400 Gossypium hirsutum HOM05D005726 ORTHO05D001733 3.7e-17 92.0 138 39.1
Phvul.009G017000 Phaseolus vulgaris HOM05D005726 ORTHO05D001733 4.9e-17 91.7 138 37.7
Potri.004G167800 Populus trichocarpa HOM05D005726 ORTHO05D001733 6.4e-17 91.3 137 36.5
Oeu037538.1 Olea europaea HOM05D005726 ORTHO05D001733 8.3e-17 90.9 134 40.3
CsaV3_2G029540 Cucumis sativus L. HOM05D005726 ORTHO05D001733 1.4e-16 90.1 137 36.5
FAN04G1699 Fragaria x ananassa HOM05D005726 ORTHO05D001733 1.4e-16 90.1 122 41.8
Ciclev10029543m.g Citrus clementina HOM05D005726 ORTHO05D001733 1.9e-16 89.7 136 36.8
Gohir.D12G033000 Gossypium hirsutum HOM05D005726 ORTHO05D001733 1.9e-16 89.7 141 39.0
Gorai.008G033800 Gossypium raimondii HOM05D005726 ORTHO05D001733 1.9e-16 89.7 141 39.0
VMungo1309G2498 Vigna mungo HOM05D005726 ORTHO05D001733 1.9e-16 89.7 138 38.4
Ciclev10029854m.g Citrus clementina HOM05D005726 ORTHO05D001733 2.4e-16 89.4 136 36.8
QL11p047517 Quercus lobata HOM05D005726 ORTHO05D001733 2.4e-16 89.4 137 40.1
RcHm_v2.0_Chr6g0302871 Rosa chinensis HOM05D005726 ORTHO05D001733 2.4e-16 89.4 127 43.3
Cpa.g.sc37.193 Carica papaya HOM05D005726 ORTHO05D001733 4.1e-16 88.6 137 35.8
Eucgr.F00586 Eucalyptus grandis HOM05D005726 ORTHO05D001733 5.4e-16 88.2 135 38.5
Oeu027542.1 Olea europaea HOM05D005726 ORTHO05D001733 7.0e-16 87.8 134 38.8
ATR0810G150 Amborella trichopoda HOM05D005726 ORTHO05D001733 4.6e-15 85.1 137 39.4
DCAR_003698 Daucus carota HOM05D005726 ORTHO05D001733 4.6e-15 85.1 136 35.3
Lalb_Chr11g0061921 Lupinus albus HOM05D005726 ORTHO05D001733 7.8e-15 84.3 137 36.5
Nitab4.5_0002561g0020 Nicotiana tabacum HOM05D005726 ORTHO05D001733 1.3e-14 83.6 140 35.0
Sopen04g035070 Solanum pennellii HOM05D005726 ORTHO05D001733 3.9e-14 82.0 145 34.5
PGSC0003DMG400009937 Solanum tuberosum HOM05D005726 ORTHO05D001733 3.9e-14 82.0 145 34.5
CANSAT25G0582 Cannabis sativa HOM05D005726 ORTHO05D001733 6.6e-14 81.3 137 33.6
PGR031G2508 Punica granatum HOM05D005726 ORTHO05D001733 6.6e-14 81.3 135 36.3
Cc02_g16550 Coffea canephora HOM05D005726 ORTHO05D001733 5.6e-13 78.2 141 37.6
MBI05_g46327_MAGBIO Magnolia biondii HOM05D005726 ORTHO05D001733 5.6e-13 78.2 121 37.2
Manes.04G078400 Manihot esculenta HOM05D005726 ORTHO05D001733 1.6e-12 76.6 138 35.5
Sabra09G0098800 Salix brachista HOM05D005726 ORTHO05D001733 4.7e-12 75.1 125 32.0
Actinidia00594 Actinidia chinensis HOM05D005726 ORTHO05D001733 8.1e-12 74.3 120 35.8
ClCG05G018250 Citrullus lanatus HOM05D005726 ORTHO05D001733 8.1e-12 74.3 135 36.3
Sed0014046 Sechium edule HOM05D005726 ORTHO05D001733 8.1e-12 74.3 131 36.6
SHI08068 Sapria himalayana HOM05D005726 ORTHO05D001733 3.1e-11 72.4 110 40.0
Lsat_1_v5_gn_2_9581 Lactuca sativa HOM05D005726 ORTHO05D001733 2.0e-10 69.7 136 34.6
CsaV3_3G045890 Cucumis sativus L. HOM05D005726 ORTHO05D001733 5.8e-10 68.2 135 34.1
Prupe.1G365100 Prunus persica HOM05D005726 ORTHO05D001733 5.8e-10 68.2 139 33.1
Migut.C00838 Erythranthe guttata HOM05D005726 ORTHO05D001733 7.5e-10 67.8 119 33.6
MELO3C003749.2 Cucumis melo HOM05D005726 ORTHO05D001733 2.2e-09 66.2 135 33.3
Migut.N03162 Erythranthe guttata HOM05D005726 ORTHO05D001733 4.9e-09 65.1 134 33.6
Ah.11g039720 Amaranthus hybridus HOM05D005726 ORTHO05D001733 1.9e-08 63.2 128 36.7
TPR.G38487 Trifolium pratense HOM05D005726 ORTHO05D001733 2.4e-08 62.8 79 38.0
Nn2g15754 Nelumbo nucifera HOM05D003064 ORTHO05D001733 7.1e-08 61.2 114 34.2
TPR.G34542 Trifolium pratense HOM05D005726 ORTHO05D001733 7.1e-08 61.2 119 34.5
Gorai.004G017800 Gossypium raimondii HOM05D003064 ORTHO05D001733 1.2e-07 60.5 115 35.7
PGR042G3858 Punica granatum HOM05D005726 ORTHO05D001733 1.2e-07 60.5 145 35.2
Peaxi162Scf00438g00833 Petunia axillaris HOM05D005726 ORTHO05D001733 1.6e-07 60.1 138 31.2
ClCG02G004310 Citrullus lanatus HOM05D007714 ORTHO05D009659 2.1e-07 59.7 116 36.2
Gohir.D08G022500 Gossypium hirsutum HOM05D003064 ORTHO05D001733 2.1e-07 59.7 115 35.7
Gohir.A08G012000 Gossypium hirsutum HOM05D003064 ORTHO05D001733 2.7e-07 59.3 115 35.7
Medtr3g113930 Medicago truncatula HOM05D005726 ORTHO05D001733 2.7e-07 59.3 117 35.0
Medtr4g094472 Medicago truncatula HOM05D018548 ORTHO05D020752 2.7e-07 59.3 140 34.3
THA.LOC104807528 Tarenaya hassleriana HOM05D003064 ORTHO05D001733 2.7e-07 59.3 110 35.5
MELO3C020779.2 Cucumis melo HOM05D005726 ORTHO05D001733 3.5e-07 58.9 134 34.3
Peaxi162Scf00400g00087 Petunia axillaris HOM05D005726 ORTHO05D001733 4.6e-07 58.5 120 30.0
EL10Ac1g02194 Beta vulgaris HOM05D005726 ORTHO05D001733 6.0e-07 58.2 132 32.6
TAR633G1282 Trochodendron aralioides HOM05D003064 ORTHO05D001733 6.0e-07 58.2 123 33.3
BcaB07g30277 Brassica carinata HOM05D005726 ORTHO05D001733 1.0e-06 57.4 33 84.8
CsaV3_2G015680 Cucumis sativus L. HOM05D005726 ORTHO05D001733 1.3e-06 57.0 134 34.3
TAR623G1618 Trochodendron aralioides HOM05D003064 ORTHO05D001733 1.3e-06 57.0 123 31.7
CsaV3_7G000790 Cucumis sativus L. HOM05D007714 ORTHO05D009659 3.0e-06 55.8 117 33.3
Gohir.A13G213900 Gossypium hirsutum HOM05D003064 ORTHO05D001733 3.0e-06 55.8 110 36.4
Gohir.D13G217700 Gossypium hirsutum HOM05D003064 ORTHO05D001733 3.0e-06 55.8 110 36.4
Gorai.013G248300 Gossypium raimondii HOM05D003064 ORTHO05D001733 3.0e-06 55.8 110 36.4
Lj1g0006182 Lotus japonicus HOM05D005726 ORTHO05D001733 3.0e-06 55.8 124 33.1
Lj4g0016221 Lotus japonicus HOM05D018548 ORTHO05D020752 3.0e-06 55.8 117 35.0
Solyc04g081460.2 Solanum lycopersicum HOM05D005726 ORTHO05D001733 3.0e-06 55.8 61 41.0
Sed0013832 Sechium edule HOM05D007714 ORTHO05D009659 3.9e-06 55.5 117 34.2
Aa31LG5G5080 Aethionema arabicum HOM05D003064 ORTHO05D001733 5.1e-06 55.1 115 36.5
CsaV3_7G031520 Cucumis sativus L. HOM05D003064 ORTHO05D001733 8.6e-06 54.3 113 37.2
Eucgr.B03628 Eucalyptus grandis HOM05D003064 ORTHO05D001733 8.6e-06 54.3 115 33.9
Glyma.12G024300 Glycine max HOM05D005726 ORTHO05D001733 8.6e-06 54.3 104 34.6
TPR.G23812 Trifolium pratense HOM05D018548 ORTHO05D020752 8.6e-06 54.3 126 34.9


User provided reference genes

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