Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g14610 Schrenkiella parvula HOM05D005250 ORTHO05D006342 7.9e-155 550.4 286 100.0
Thhalv10004726m.g Eutrema salsugineum HOM05D005250 ORTHO05D006342 5.0e-149 531.2 287 96.5
Carub.0005s0293 Capsella rubella HOM05D005250 ORTHO05D006342 9.4e-148 526.9 287 94.4
BcaB07g30645 Brassica carinata HOM05D005250 ORTHO05D006342 1.2e-147 526.6 288 95.1
AL5G13570 Arabidopsis lyrata HOM05D005250 ORTHO05D006342 2.3e-146 522.3 285 94.4
BcaC04g21447 Brassica carinata HOM05D005250 ORTHO05D006342 3.0e-146 521.9 288 94.4
C09p31650 Brassica napus HOM05D005250 ORTHO05D006342 3.3e-145 518.5 282 94.7
A09p24730 Brassica napus HOM05D005250 ORTHO05D000117 1.3e-144 516.5 282 94.3
BraA09t38059Z Brassica rapa HOM05D005250 ORTHO05D000117 4.1e-143 511.5 282 93.6
CARHR146190 Cardamine hirsuta HOM05D005250 ORTHO05D006342 1.7e-141 506.1 290 91.0
BcaC06g35305 Brassica carinata HOM05D005250 ORTHO05D006342 4.7e-123 444.9 267 87.3
THA.LOC104805209 Tarenaya hassleriana HOM05D005250 ORTHO05D006342 9.2e-119 430.6 284 77.8
BcaC04g19887 Brassica carinata HOM05D005250 ORTHO05D006342 2.0e-118 429.5 255 87.5
C04p21460 Brassica napus HOM05D005250 ORTHO05D006342 3.3e-116 422.2 284 80.6
Aa31LG2G6930 Aethionema arabicum HOM05D005250 ORTHO05D006342 4.7e-115 418.3 261 82.4
arahy.Tifrunner.gnm1.ann1.78R55B Arachis hypogaea HOM05D005250 ORTHO05D006342 3.4e-113 412.1 285 74.4
TWI79G0919 Tripterygium wilfordii HOM05D005250 ORTHO05D006342 2.9e-112 409.1 271 75.3
arahy.Tifrunner.gnm1.ann1.F58IRU Arachis hypogaea HOM05D005250 ORTHO05D006342 1.9e-111 406.4 292 72.9
Sed0024712 Sechium edule HOM05D005250 ORTHO05D006342 1.9e-111 406.4 272 76.5
BolC4t23671H Brassica oleracea HOM05D005250 ORTHO05D006342 5.4e-111 404.8 356 66.3
Manes.01G024400 Manihot esculenta HOM05D005250 ORTHO05D006342 5.4e-111 404.8 272 76.1
Thecc.02G322900 Theobroma cacao HOM05D005250 ORTHO05D006342 7.0e-111 404.4 285 74.7
COL.COLO4_27807 Corchorus olitorius HOM05D005250 ORTHO05D002390 1.2e-110 403.7 287 73.5
MD16G1056000 Malus domestica HOM05D005250 ORTHO05D006342 2.7e-110 402.5 272 76.5
Ca_22871_v3 Cicer arietinum L. HOM05D005250 ORTHO05D006342 1.0e-109 400.6 291 71.5
RcHm_v2.0_Chr4g0437361 Rosa chinensis HOM05D005250 ORTHO05D006342 1.7e-109 399.8 283 73.1
Sed0000568 Sechium edule HOM05D005250 ORTHO05D006342 1.7e-109 399.8 273 75.5
Gohir.A03G106400 Gossypium hirsutum HOM05D005250 ORTHO05D006342 5.6e-108 394.8 290 71.4
CsaV3_6G033890 Cucumis sativus L. HOM05D005250 ORTHO05D006342 9.5e-108 394.0 271 74.5
CAN.G263.5 Capsicum annuum HOM05D005250 ORTHO05D006342 1.2e-107 393.7 284 73.9
FAN12G3515 Fragaria x ananassa HOM05D005250 ORTHO05D006342 2.8e-107 392.5 279 72.8
Medtr8g066180 Medicago truncatula HOM05D005250 ORTHO05D006342 3.6e-107 392.1 292 70.2
Actinidia13405 Actinidia chinensis HOM05D005250 ORTHO05D006342 4.7e-107 391.7 283 72.4
Phvul.003G280700 Phaseolus vulgaris HOM05D005250 ORTHO05D006342 6.2e-107 391.3 270 73.3
PGSC0003DMG400001920 Solanum tuberosum HOM05D005250 ORTHO05D006342 8.1e-107 391.0 277 75.8
Ah.02g126720 Amaranthus hybridus HOM05D005250 ORTHO05D006342 1.1e-106 390.6 277 71.1
Hma1.2p1_0473F.1_g160080 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 1.1e-106 390.6 260 76.2
Sopen04g001290 Solanum pennellii HOM05D005250 ORTHO05D006342 1.1e-106 390.6 283 73.9
TPR.G3346 Trifolium pratense HOM05D005250 ORTHO05D006342 1.8e-106 389.8 293 69.6
Nn7g36775 Nelumbo nucifera HOM05D005250 ORTHO05D006342 3.1e-106 389.0 282 72.7
FAN22G1621 Fragaria x ananassa HOM05D000202 ORTHO05D006342 4.0e-106 388.7 276 73.2
Gorai.005G147500 Gossypium raimondii HOM05D005250 ORTHO05D006342 4.0e-106 388.7 289 71.3
Duzib251G0604 Durio zibethinus HOM05D005250 ORTHO05D006342 6.8e-106 387.9 306 69.0
Psat4g092800 Pisum sativum HOM05D005250 ORTHO05D006342 8.9e-106 387.5 288 70.5
Prupe.1G293300 Prunus persica HOM05D005250 ORTHO05D006342 2.0e-105 386.3 244 79.1
Atru.chr11.1561 Acer truncatum HOM05D005250 ORTHO05D006342 4.4e-105 385.2 285 71.9
PGR119G1921 Punica granatum HOM05D005250 ORTHO05D006342 1.7e-104 383.3 287 71.8
TAR623G0863 Trochodendron aralioides HOM05D005250 ORTHO05D006342 2.2e-104 382.9 282 72.3
FAN17G2738 Fragaria x ananassa HOM05D000202 ORTHO05D006342 3.7e-104 382.1 294 69.0
Lsat_1_v5_gn_8_35661 Lactuca sativa HOM05D005250 ORTHO05D006342 3.7e-104 382.1 271 73.1
FvH4_4g29320 Fragaria vesca HOM05D005250 ORTHO05D006342 8.3e-104 380.9 241 78.8
Hund25156 Selenicereus undatus HOM05D005250 ORTHO05D006342 1.1e-103 380.6 248 76.6
Sc11g0002640 Simmondsia chinensis HOM05D005250 ORTHO05D006342 1.4e-103 380.2 278 70.5
EL10Ac6g14674 Beta vulgaris HOM05D005250 ORTHO05D006342 3.2e-103 379.0 306 64.7
Eucgr.G02422 Eucalyptus grandis HOM05D005250 ORTHO05D006342 3.2e-103 379.0 280 71.4
PSO339G6010 Papaver somniferum HOM05D005250 ORTHO05D006342 3.2e-103 379.0 278 70.9
GSVIVG01010104001 Vitis vinifera HOM05D005250 ORTHO05D006342 3.2e-103 379.0 266 72.9
Lj2g0021011 Lotus japonicus HOM05D005250 ORTHO05D006342 4.1e-103 378.6 284 70.8
CiPaw.06G094800 Carya illinoinensis HOM05D005250 ORTHO05D006342 5.4e-103 378.3 277 70.4
Glyma.11G011400 Glycine max HOM05D005250 ORTHO05D006342 5.4e-103 378.3 266 72.6
Lalb_Chr16g0391841 Lupinus albus HOM05D005250 ORTHO05D006342 1.6e-102 376.7 295 68.1
PSO384G2373 Papaver somniferum HOM05D005250 ORTHO05D006342 1.6e-102 376.7 278 70.5
HanXRQChr12g0365051 Helianthus annuus HOM05D005250 ORTHO05D006342 6.0e-102 374.8 276 71.4
AUR62003059 Chenopodium quinoa HOM05D005250 ORTHO05D006342 1.0e-101 374.0 296 66.2
Ciclev10032293m.g Citrus clementina HOM05D005250 ORTHO05D006342 1.7e-101 373.2 268 70.9
Nitab4.5_0000591g0010 Nicotiana tabacum HOM05D005250 ORTHO05D006342 3.9e-101 372.1 287 70.0
Psat4g118880 Pisum sativum HOM05D005250 ORTHO05D006342 1.1e-100 370.5 290 67.2
Cc11_g11570 Coffea canephora HOM05D005250 ORTHO05D006342 2.5e-100 369.4 296 67.2
MD13G1056700 Malus domestica HOM05D005250 ORTHO05D006342 2.5e-100 369.4 248 78.2
Rhsim09G0122300 Rhododendron simsii HOM05D005250 ORTHO05D006342 1.2e-99 367.1 311 64.0
MBI19_g36132_MAGBIO Magnolia biondii HOM05D005250 ORTHO05D006342 1.6e-99 366.7 259 71.0
AT2G03780 Arabidopsis thaliana HOM05D005250 ORTHO05D006342 8.1e-99 364.4 198 93.4
ECA233G0908 Erigeron canadensis HOM05D005250 ORTHO05D006342 8.1e-99 364.4 249 74.3
MELO3C011403.2 Cucumis melo HOM05D005250 ORTHO05D006342 1.8e-98 363.2 238 77.3
Migut.L01163 Erythranthe guttata HOM05D005250 ORTHO05D006342 6.8e-98 361.3 287 67.9
Lj3A1027G83 Lonicera japonica HOM05D005250 ORTHO05D006342 1.2e-97 360.5 270 70.4
SGA_v2.0_scaffold36G14486 Striga asiatica HOM05D005250 ORTHO05D006342 2.6e-97 359.4 305 64.6
SalBow2G3543 Salvia bowleyana HOM05D005250 ORTHO05D006342 9.9e-97 357.5 284 68.3
CANSAT64G2789 Cannabis sativa HOM05D005250 ORTHO05D006342 3.7e-96 355.5 218 82.1
Potri.010G138300 Populus trichocarpa HOM05D005250 ORTHO05D006342 2.4e-95 352.8 278 66.9
ATR1096G147 Amborella trichopoda HOM05D005250 ORTHO05D006342 2.7e-94 349.4 266 68.4
BcaC09g49168 Brassica carinata HOM05D005250 ORTHO05D006342 2.7e-94 349.4 208 88.5
unitig_26.g10282 Utricularia gibba HOM05D005250 ORTHO05D006342 1.3e-93 347.1 299 62.9
CSS0000657 Camellia sinensis var. sinensis HOM05D005250 ORTHO05D006342 5.6e-92 341.7 224 76.8
ClCG08G010590 Citrullus lanatus HOM05D005250 ORTHO05D006342 7.3e-92 341.3 272 67.3
MSTRG.778 Avicennia marina HOM05D005250 ORTHO05D006342 2.8e-91 339.3 267 67.0
Sabra10G0106500 Salix brachista HOM05D005250 ORTHO05D006342 3.4e-89 332.4 246 71.1
Oeu048123.1 Olea europaea HOM05D005250 ORTHO05D006342 1.3e-88 330.5 288 61.5
Os01g0265900 Oryza sativa ssp. japonica HOM05D005250 ORTHO05D006342 1.4e-87 327.0 232 70.3
AUR62007874 Chenopodium quinoa HOM05D005250 ORTHO05D006342 4.2e-87 325.5 231 71.4
CDE02G4654 Ceratophyllum demersum HOM05D005250 ORTHO05D006342 3.5e-86 322.4 243 67.1
Haze_11860 Corylus avellana HOM05D005250 ORTHO05D006342 3.5e-86 322.4 289 60.6
Aqoxy2G00415 Aquilegia oxysepala HOM05D005250 ORTHO05D006342 3.0e-85 319.3 289 59.5
DCAR_007208 Daucus carota HOM05D005250 ORTHO05D006342 1.6e-83 313.5 223 69.5
MBI19_g20787_MAGBIO Magnolia biondii HOM05D005250 ORTHO05D006342 2.1e-83 313.2 286 61.5
Nitab4.5_0000014g0530 Nicotiana tabacum HOM05D005250 ORTHO05D006342 6.2e-83 311.6 224 73.7
C07p17630 Brassica napus HOM05D005250 ORTHO05D006342 3.1e-82 309.3 341 56.0
Zm00001eb333230 Zea mays HOM05D005250 ORTHO05D006342 5.3e-82 308.5 257 64.2
arahy.Tifrunner.gnm1.ann1.LMD1JY Arachis hypogaea HOM05D005250 ORTHO05D006342 9.0e-82 307.8 278 61.5
Gohir.D02G131600 Gossypium hirsutum HOM05D005250 ORTHO05D006342 5.8e-81 305.1 191 78.0
Solyc04g005310.3 Solanum lycopersicum HOM05D005250 ORTHO05D006342 2.7e-78 296.2 198 77.8
vmacro10476 Vaccinium macrocarpon HOM05D005250 ORTHO05D006342 3.5e-78 295.8 337 52.2
SHI16015 Sapria himalayana HOM05D005250 ORTHO05D006342 4.6e-70 268.9 196 68.4
Peaxi162Scf00873g00111 Petunia axillaris HOM05D005250 ORTHO05D006342 1.8e-69 266.9 234 62.0
Dinv34022 Davidia involucrata HOM05D005250 ORTHO05D006342 9.6e-68 261.2 172 75.0
Hma1.2p1_1307F.1_g274740 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 1.1e-66 257.7 176 73.3
BolC9t57871H Brassica oleracea HOM05D005250 ORTHO05D006342 1.2e-65 254.2 267 58.8
HPP92_021194 Vanilla planifolia HOM05D005250 ORTHO05D006342 3.4e-65 252.7 253 54.9
Mapoly0009s0086 Marchantia polymorpha HOM05D005250 ORTHO05D006342 1.5e-57 227.3 233 51.5
EL10Ac8g19720 Beta vulgaris HOM05D005250 ORTHO05D006342 2.6e-57 226.5 220 57.3
AagrBONN_evm.TU.Sc2ySwM_117.326 Anthoceros agrestis HOM05D005250 ORTHO05D006342 5.0e-56 222.2 229 49.8
SMO236G0018 Selaginella moellendorffii HOM05D005250 ORTHO05D006342 9.3e-55 218.0 231 48.5
arahy.Tifrunner.gnm1.ann1.M1Z73T Arachis hypogaea HOM05D005250 ORTHO05D006342 1.8e-50 203.8 197 57.9
A07p01490 Brassica napus HOM05D005250 ORTHO05D006342 3.1e-50 203.0 123 89.4
C09p61860 Brassica napus HOM05D005250 ORTHO05D006342 1.9e-47 193.7 123 86.2
SEGI_07586 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 2.5e-47 193.4 167 58.1
A05p26370 Brassica napus HOM05D005250 ORTHO05D006342 3.3e-44 183.0 123 82.1
Hma1.2p1_0473F.1_g160070 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 7.4e-44 181.8 134 72.4
Aa31LG5G22420 Aethionema arabicum HOM05D001647 ORTHO05D001191 2.2e-40 170.2 138 66.7
BraA04t18025Z Brassica rapa HOM05D005250 ORTHO05D006342 2.2e-40 170.2 96 92.7
BolC7t42269H Brassica oleracea HOM05D005250 ORTHO05D006342 7.9e-38 161.8 287 42.2
Hma1.2p1_0473F.1_g160090 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 1.6e-30 137.5 92 73.9
C07p34180 Brassica napus HOM05D005250 ORTHO05D006342 1.5e-28 131.0 200 51.0
BolC7t43944H Brassica oleracea HOM05D005250 ORTHO05D006342 1.5e-28 131.0 200 50.5
A03p09860 Brassica napus HOM05D001868 ORTHO05D003985 2.0e-28 130.6 73 93.2
A03p09870 Brassica napus HOM05D005250 ORTHO05D006342 9.1e-26 121.7 88 77.3
C08p18960 Brassica napus HOM05D005250 ORTHO05D006342 5.9e-25 119.0 79 79.7
CBR_g489 Chara braunii HOM05D000019 ORTHO05D000048 7.2e-23 112.1 113 51.3
SEGI_14635 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 4.7e-22 109.4 166 39.8
PGSC0003DMG400008670 Solanum tuberosum HOM05D005250 ORTHO05D006342 8.0e-22 108.6 78 65.4
BcaB07g30653 Brassica carinata HOM05D005250 ORTHO05D006342 3.0e-21 106.7 56 96.4
BcaB07g30654 Brassica carinata HOM05D005250 ORTHO05D006342 3.0e-21 106.7 56 96.4
RcHm_v2.0_Chr3g0459601 Rosa chinensis HOM05D005250 ORTHO05D006342 3.7e-19 99.8 59 78.0
BcaC03g14881 Brassica carinata HOM05D022129 ORTHO05D027289 1.4e-18 97.8 102 55.9
BcaB07g30647 Brassica carinata HOM05D005250 ORTHO05D006342 5.9e-17 92.4 56 83.9
Cfa027242 Carpinus fangiana HOM05D005250 ORTHO05D006342 3.2e-15 86.7 250 30.8
A02p10340 Brassica napus HOM05D022129 ORTHO05D006342 4.2e-15 86.3 93 54.8
RcHm_v2.0_Chr3g0459611 Rosa chinensis HOM05D005250 ORTHO05D006342 2.3e-13 80.5 50 74.0
Ah.03g138620 Amaranthus hybridus HOM05D005250 ORTHO05D006342 4.4e-12 76.3 50 72.0
Glyma.01G228600 Glycine max HOM05D005250 ORTHO05D006342 2.2e-11 73.9 49 69.4
SGA_v2.0_scaffold139G35371 Striga asiatica HOM05D005250 ORTHO05D006342 2.8e-11 73.6 110 41.8
SEGI_39770 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 1.4e-10 71.2 59 52.5
SGA_v2.0_scaffold32G13106 Striga asiatica HOM05D005250 ORTHO05D006342 3.1e-10 70.1 89 48.3
PRCOL_00004570 Prasinoderma coloniale HOM05D006384 ORTHO05D007917 1.9e-07 60.8 178 25.3
SEGI_17465 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 7.3e-07 58.9 58 55.2
BolC7t43933H Brassica oleracea HOM05D000003 ORTHO05D001498 1.2e-06 58.2 59 59.3
A02p31010 Brassica napus HOM05D005250 ORTHO05D096592 4.7e-06 56.2 74 48.6


User provided reference genes

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