Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g14510 Schrenkiella parvula HOM05D004399 ORTHO05D005303 8.3e-131 470.3 227 100.0
Thhalv10004874m.g Eutrema salsugineum HOM05D004399 ORTHO05D005303 2.3e-128 462.2 227 97.4
BcaC06g31172 Brassica carinata HOM05D004399 ORTHO05D005303 1.1e-127 459.9 227 96.9
BcaB07g30287 Brassica carinata HOM05D004399 ORTHO05D005303 1.5e-127 459.5 227 96.9
A06p42990 Brassica napus HOM05D004399 ORTHO05D005303 1.9e-127 459.1 227 96.5
BcaC06g31162 Brassica carinata HOM05D004399 ORTHO05D005303 5.6e-127 457.6 225 96.9
C07p34040 Brassica napus HOM05D004399 ORTHO05D005303 5.6e-127 457.6 225 96.9
BolC7t43918H Brassica oleracea HOM05D004399 ORTHO05D005303 5.6e-127 457.6 225 96.9
AL5G13480 Arabidopsis lyrata HOM05D004399 ORTHO05D005303 7.3e-127 457.2 227 96.5
Carub.0005s0281 Capsella rubella HOM05D004399 ORTHO05D005303 2.1e-126 455.7 227 96.0
A02p33520 Brassica napus HOM05D004399 ORTHO05D005303 3.6e-126 454.9 227 96.0
AT2G03690 Arabidopsis thaliana HOM05D004399 ORTHO05D005303 1.4e-125 453.0 227 95.6
BcaC03g17230 Brassica carinata HOM05D004399 ORTHO05D005303 3.1e-125 451.8 227 96.0
BolC2t11249H Brassica oleracea HOM05D004399 ORTHO05D005303 3.1e-125 451.8 227 96.0
AL5G13460 Arabidopsis lyrata HOM05D004399 ORTHO05D005303 5.2e-125 451.1 227 95.2
CARHR146010 Cardamine hirsuta HOM05D004399 ORTHO05D005303 5.2e-125 451.1 227 96.0
Aa31LG2G6990 Aethionema arabicum HOM05D004399 ORTHO05D005303 4.4e-124 448.0 227 93.8
THA.LOC104805201 Tarenaya hassleriana HOM05D004399 ORTHO05D005303 9.8e-116 420.2 227 87.7
Duzib251G0565 Durio zibethinus HOM05D004399 ORTHO05D005303 1.9e-114 416.0 225 85.3
C02p51640 Brassica napus HOM05D004399 ORTHO05D005303 1.2e-113 413.3 210 95.7
Thecc.02G328800 Theobroma cacao HOM05D004399 ORTHO05D005303 1.6e-113 412.9 225 86.2
QL03p073920 Quercus lobata HOM05D004399 ORTHO05D005303 3.9e-112 408.3 220 85.9
COL.COLO4_27864 Corchorus olitorius HOM05D004399 ORTHO05D005303 6.6e-112 407.5 221 86.4
Gohir.A03G104700 Gossypium hirsutum HOM05D004399 ORTHO05D005303 3.3e-111 405.2 225 84.0
MD13G1060600 Malus domestica HOM05D004399 ORTHO05D005303 7.3e-111 404.1 221 85.1
Prupe.1G288800 Prunus persica HOM05D004399 ORTHO05D005303 1.2e-110 403.3 224 83.0
TWI75G0511 Tripterygium wilfordii HOM05D004399 ORTHO05D005303 2.8e-110 402.1 224 83.0
Cpa.g.sc1.139 Carica papaya HOM05D004399 ORTHO05D005303 3.6e-110 401.7 220 84.1
Manes.05G109300 Manihot esculenta HOM05D004399 ORTHO05D005303 8.1e-110 400.6 224 82.1
PGR083G0959 Punica granatum HOM05D004399 ORTHO05D005303 1.4e-109 399.8 222 82.9
Potri.008G097100 Populus trichocarpa HOM05D004399 ORTHO05D005303 1.8e-109 399.4 219 84.0
Psat3g063920 Pisum sativum HOM05D004399 ORTHO05D005303 8.9e-109 397.1 223 83.4
Eucgr.B03145 Eucalyptus grandis HOM05D004399 ORTHO05D005303 1.5e-108 396.4 222 82.4
CiPaw.05G124200 Carya illinoinensis HOM05D004399 ORTHO05D005303 2.0e-108 396.0 224 81.7
ECA233G2368 Erigeron canadensis HOM05D004399 ORTHO05D005303 3.4e-108 395.2 225 81.8
CsaV3_6G033760 Cucumis sativus L. HOM05D004399 ORTHO05D005303 4.4e-108 394.8 216 83.8
Lj1g0019699 Lotus japonicus HOM05D004399 ORTHO05D005303 4.4e-108 394.8 225 83.6
Lalb_Chr17g0341271 Lupinus albus HOM05D004399 ORTHO05D005303 4.4e-108 394.8 216 85.2
CAN.G707.11 Capsicum annuum HOM05D004399 ORTHO05D005303 5.8e-108 394.4 224 81.7
Haze_11894 Corylus avellana HOM05D004399 ORTHO05D005303 5.8e-108 394.4 224 83.0
DCAR_024127 Daucus carota HOM05D004399 ORTHO05D005303 5.8e-108 394.4 219 83.1
Dinv34060 Davidia involucrata HOM05D004399 ORTHO05D005303 5.8e-108 394.4 220 82.7
Cfa008867 Carpinus fangiana HOM05D004399 ORTHO05D005303 7.6e-108 394.0 224 82.6
Lj3C1029T7 Lonicera japonica HOM05D004399 ORTHO05D005303 7.6e-108 394.0 220 83.2
SGA_v2.0_scaffold16G07803 Striga asiatica HOM05D004399 ORTHO05D005303 1.3e-107 393.3 223 83.9
TAR622G1336 Trochodendron aralioides HOM05D004399 ORTHO05D005303 1.3e-107 393.3 224 82.1
Cc06_g15640 Coffea canephora HOM05D004399 ORTHO05D005303 2.2e-107 392.5 224 81.2
MELO3C011412.2 Cucumis melo HOM05D004399 ORTHO05D005303 2.2e-107 392.5 216 82.9
MD16G1059800 Malus domestica HOM05D004399 ORTHO05D005303 2.2e-107 392.5 221 82.4
CANSAT11G0637 Cannabis sativa HOM05D004399 ORTHO05D005303 2.9e-107 392.1 221 81.9
ClCG08G010510 Citrullus lanatus HOM05D004399 ORTHO05D005303 2.9e-107 392.1 220 82.3
Ciclev10032681m.g Citrus clementina HOM05D004399 ORTHO05D005303 3.7e-107 391.7 223 81.2
CSS0044473 Camellia sinensis var. sinensis HOM05D004399 ORTHO05D005303 4.9e-107 391.3 220 82.3
Ca_25695_v3 Cicer arietinum L. HOM05D004399 ORTHO05D005303 4.9e-107 391.3 219 83.6
Lj6A777T47 Lonicera japonica HOM05D004399 ORTHO05D005303 6.4e-107 391.0 216 83.3
Hund05832 Selenicereus undatus HOM05D004399 ORTHO05D005303 6.4e-107 391.0 220 82.3
Gorai.005G145900 Gossypium raimondii HOM05D004399 ORTHO05D005303 8.3e-107 390.6 212 85.4
Sc11g0002530 Simmondsia chinensis HOM05D004399 ORTHO05D005303 8.3e-107 390.6 220 82.3
Ah.02g126810 Amaranthus hybridus HOM05D004399 ORTHO05D005303 1.1e-106 390.2 216 82.9
Ah.03g138840 Amaranthus hybridus HOM05D004399 ORTHO05D005303 1.1e-106 390.2 220 81.4
CANSAT64G2641 Cannabis sativa HOM05D004399 ORTHO05D005303 1.1e-106 390.2 221 82.4
FAN22G0874 Fragaria x ananassa HOM05D004399 ORTHO05D005303 1.1e-106 390.2 220 81.8
Peaxi162Scf00175g00428 Petunia axillaris HOM05D004399 ORTHO05D005303 1.1e-106 390.2 220 82.7
Potri.010G157500 Populus trichocarpa HOM05D004399 ORTHO05D005303 1.1e-106 390.2 219 83.6
HanXRQChr12g0363151 Helianthus annuus HOM05D004399 ORTHO05D005303 1.4e-106 389.8 220 83.6
Sabra08G0073300 Salix brachista HOM05D004399 ORTHO05D005303 1.4e-106 389.8 219 82.6
Aqoxy3G03260 Aquilegia oxysepala HOM05D004399 ORTHO05D005303 1.9e-106 389.4 219 82.2
arahy.Tifrunner.gnm1.ann1.MJW4NY Arachis hypogaea HOM05D004399 ORTHO05D005303 1.9e-106 389.4 220 83.2
Hma1.2p1_0566F.1_g179870 Hydrangea macrophylla HOM05D004399 ORTHO05D005303 1.9e-106 389.4 221 81.4
Phvul.010G102900 Phaseolus vulgaris HOM05D004399 ORTHO05D005303 1.9e-106 389.4 223 82.5
RcHm_v2.0_Chr4g0438081 Rosa chinensis HOM05D004399 ORTHO05D005303 1.9e-106 389.4 221 81.0
PGSC0003DMG402028313 Solanum tuberosum HOM05D004399 ORTHO05D005303 2.4e-106 389.0 224 81.2
Nn3g17119 Nelumbo nucifera HOM05D004399 ORTHO05D005303 3.2e-106 388.7 223 80.3
Atru.chr11.1611 Acer truncatum HOM05D004399 ORTHO05D005303 4.1e-106 388.3 226 79.6
EL10Ac6g15013 Beta vulgaris HOM05D004399 ORTHO05D005303 4.1e-106 388.3 220 81.8
Ca_08608_v3 Cicer arietinum L. HOM05D004399 ORTHO05D005303 4.1e-106 388.3 214 84.6
FvH4_4g29830 Fragaria vesca HOM05D004399 ORTHO05D005303 4.1e-106 388.3 220 80.9
Gohir.D02G129900 Gossypium hirsutum HOM05D004399 ORTHO05D005303 4.1e-106 388.3 212 84.9
FAN17G2847 Fragaria x ananassa HOM05D004399 ORTHO05D005303 5.4e-106 387.9 220 80.9
MBI14_g37191_MAGBIO Magnolia biondii HOM05D004399 ORTHO05D005303 5.4e-106 387.9 220 81.4
AUR62003087 Chenopodium quinoa HOM05D004399 ORTHO05D005303 7.1e-106 387.5 220 81.4
PSO017G5651 Papaver somniferum HOM05D004399 ORTHO05D005303 9.2e-106 387.1 225 79.1
VMungo0331G0538 Vigna mungo HOM05D004399 ORTHO05D005303 1.2e-105 386.7 223 81.6
Solyc05g012150.4 Solanum lycopersicum HOM05D004399 ORTHO05D005303 1.6e-105 386.3 217 82.5
Sopen05g006940 Solanum pennellii HOM05D004399 ORTHO05D005303 1.6e-105 386.3 217 82.5
Lsat_1_v5_gn_8_46460 Lactuca sativa HOM05D004399 ORTHO05D005303 2.1e-105 386.0 216 82.9
Migut.L01179 Erythranthe guttata HOM05D004399 ORTHO05D005303 3.5e-105 385.2 220 81.4
arahy.Tifrunner.gnm1.ann1.E76E6E Arachis hypogaea HOM05D004399 ORTHO05D005303 4.6e-105 384.8 220 82.7
FAN12G0059 Fragaria x ananassa HOM05D004399 ORTHO05D005303 4.6e-105 384.8 220 80.5
PSO832G2862 Papaver somniferum HOM05D004399 ORTHO05D005303 4.6e-105 384.8 225 79.1
HanXRQChr08g0211681 Helianthus annuus HOM05D004399 ORTHO05D005303 6.0e-105 384.4 220 80.5
Glyma.16G032800 Glycine max HOM05D004399 ORTHO05D005303 7.8e-105 384.0 220 83.2
vmacro10433 Vaccinium macrocarpon HOM05D004399 ORTHO05D005303 7.8e-105 384.0 223 79.4
Aqoxy4G03091 Aquilegia oxysepala HOM05D004399 ORTHO05D005303 1.3e-104 383.3 215 82.3
Nn4g24779 Nelumbo nucifera HOM05D004399 ORTHO05D005303 1.3e-104 383.3 224 79.5
AUR62007904 Chenopodium quinoa HOM05D004399 ORTHO05D005303 1.7e-104 382.9 220 80.9
Sed0000590 Sechium edule HOM05D004399 ORTHO05D005303 1.7e-104 382.9 221 79.6
DCAR_026680 Daucus carota HOM05D004399 ORTHO05D005303 2.3e-104 382.5 221 81.0
Medtr4g094990 Medicago truncatula HOM05D004399 ORTHO05D005303 3.9e-104 381.7 218 81.7
Sed0002833 Sechium edule HOM05D004399 ORTHO05D005303 6.6e-104 380.9 221 79.6
Medtr7g095060 Medicago truncatula HOM05D004399 ORTHO05D005303 1.5e-103 379.8 218 81.7
Os04g0674200 Oryza sativa ssp. japonica HOM05D004399 ORTHO05D005303 2.5e-103 379.0 224 78.1
Nitab4.5_0007061g0010 Nicotiana tabacum HOM05D004399 ORTHO05D005303 4.3e-103 378.3 224 79.0
Zm00001eb433530 Zea mays HOM05D004399 ORTHO05D005303 9.6e-103 377.1 217 80.6
PSO478G0010 Papaver somniferum HOM05D004399 ORTHO05D005303 1.2e-102 376.7 225 78.2
MSTRG.7738 Avicennia marina HOM05D004399 ORTHO05D005303 1.6e-102 376.3 218 80.3
Os05g0188800 Oryza sativa ssp. japonica HOM05D004399 ORTHO05D005303 1.6e-102 376.3 224 77.7
Glyma.07G066700 Glycine max HOM05D004399 ORTHO05D005303 2.8e-102 375.6 223 80.7
Medtr4g094998 Medicago truncatula HOM05D004399 ORTHO05D005303 4.7e-102 374.8 218 80.3
Nitab4.5_0000231g0090 Nicotiana tabacum HOM05D004399 ORTHO05D005303 6.2e-102 374.4 245 73.1
Oeu031535.3 Olea europaea HOM05D004399 ORTHO05D005303 1.1e-101 373.6 250 71.6
Rhsim09G0126300 Rhododendron simsii HOM05D004399 ORTHO05D005303 1.4e-101 373.2 236 75.0
SalBow4G1206 Salvia bowleyana HOM05D004399 ORTHO05D005303 1.8e-101 372.9 219 78.5
CDE02G0376 Ceratophyllum demersum HOM05D004399 ORTHO05D005303 2.6e-100 369.0 215 79.1
TPR.G29232 Trifolium pratense HOM05D004399 ORTHO05D005303 3.8e-99 365.2 218 79.8
CDE04G3031 Ceratophyllum demersum HOM05D004399 ORTHO05D005303 1.1e-98 363.6 215 77.7
SalBow2G2941 Salvia bowleyana HOM05D004399 ORTHO05D005303 9.3e-98 360.5 274 65.7
SEGI_29941 Sequoiadendron giganteum HOM05D004399 ORTHO05D005303 1.2e-97 360.1 217 72.4
AagrBONN_evm.TU.Sc2ySwM_368.1886 Anthoceros agrestis HOM05D004399 ORTHO05D005303 5.8e-92 341.3 219 70.3
AUR62019674 Chenopodium quinoa HOM05D004399 ORTHO05D005303 9.9e-92 340.5 227 71.8
Mapoly0124s0026 Marchantia polymorpha HOM05D004399 ORTHO05D005303 3.5e-89 332.0 221 67.9
Pp3c2_220 Physcomitrium patens HOM05D004399 ORTHO05D005303 5.1e-88 328.2 217 67.3
SMO196G0238 Selaginella moellendorffii HOM05D004399 ORTHO05D005303 1.2e-84 317.0 222 65.8
MD13G1061300 Malus domestica HOM05D004399 ORTHO05D005303 9.0e-77 290.8 160 87.5
GSVIVG01000552001 Vitis vinifera HOM05D004399 ORTHO05D005303 8.4e-75 284.3 157 87.3
Sed0017877 Sechium edule HOM05D004399 ORTHO05D005303 5.5e-74 281.6 168 73.8
ATR1120G108 Amborella trichopoda HOM05D004399 ORTHO05D005303 1.2e-73 280.4 161 78.9
CBR_g38753 Chara braunii HOM05D004399 ORTHO05D001303 3.0e-72 275.8 215 60.5
SalBow4G2688 Salvia bowleyana HOM05D004399 ORTHO05D005303 8.7e-72 274.2 153 80.4
Cre03.g154850 Chlamydomonas reinhardtii HOM05D004399 ORTHO05D005303 8.7e-64 247.7 220 53.6
TPR.G35678 Trifolium pratense HOM05D004399 ORTHO05D005303 1.9e-63 246.5 131 84.7
SalBow4G1336 Salvia bowleyana HOM05D004399 ORTHO05D005303 4.3e-63 245.4 163 70.6
PRCOL_00001738 Prasinoderma coloniale HOM05D004399 ORTHO05D005303 1.9e-58 229.9 217 53.9
MCO10G350 Micromonas commoda HOM05D004399 ORTHO05D005303 2.3e-56 223.0 213 48.4
HanXRQChr10g0298331 Helianthus annuus HOM05D004399 ORTHO05D005303 8.8e-56 221.1 128 80.5
unitig_8.g3180 Utricularia gibba HOM05D004399 ORTHO05D005303 1.2e-52 210.7 111 87.4
vmacro20929 Vaccinium macrocarpon HOM05D004399 ORTHO05D005303 9.4e-50 201.1 147 72.1
Glyma.02G119500 Glycine max HOM05D004399 ORTHO05D005303 2.3e-48 196.4 112 76.8
Phvul.007G165400 Phaseolus vulgaris HOM05D004399 ORTHO05D005303 3.9e-48 195.7 115 76.5
Carub.0005s2415 Capsella rubella HOM05D004399 ORTHO05D005303 2.0e-47 193.4 105 90.5
SMO187G0002 Selaginella moellendorffii HOM05D004399 ORTHO05D005303 5.0e-43 178.7 130 60.0
MBI14_g45258_MAGBIO Magnolia biondii HOM05D004399 ORTHO05D005303 4.1e-37 159.1 86 80.2
BcaB07g30659 Brassica carinata HOM05D004399 ORTHO05D005303 1.5e-34 150.6 134 58.2
Cfa024149 Carpinus fangiana HOM05D004399 ORTHO05D005303 9.4e-34 147.9 218 37.6
HanXRQChr13g0414251 Helianthus annuus HOM05D004399 ORTHO05D005303 9.8e-31 137.9 96 74.0
SalBow4G1060 Salvia bowleyana HOM05D004399 ORTHO05D005303 3.8e-27 125.9 67 82.1
FAN04G2106 Fragaria x ananassa HOM05D004399 ORTHO05D005303 1.9e-26 123.6 74 79.7
TPR.G30910 Trifolium pratense HOM05D004399 ORTHO05D005303 9.4e-26 121.3 61 90.2
Actinidia12918 Actinidia chinensis HOM05D004399 ORTHO05D005303 5.2e-24 115.5 83 62.7
Phvul.007G165450 Phaseolus vulgaris HOM05D004399 ORTHO05D005303 6.8e-24 115.2 77 77.9
HanXRQChr01g0013031 Helianthus annuus HOM05D004399 ORTHO05D005303 3.5e-20 102.8 54 79.6
SalBow4G1755 Salvia bowleyana HOM05D004399 ORTHO05D005303 1.7e-19 100.5 57 70.2
Nn4g23036 Nelumbo nucifera HOM05D004399 ORTHO05D005303 5.6e-18 95.5 64 71.9
ATR1120G192 Amborella trichopoda HOM05D004399 ORTHO05D005303 2.1e-17 93.6 60 76.7
SalBow4G1426 Salvia bowleyana HOM05D000195 ORTHO05D000377 4.7e-17 92.4 56 83.9
RcHm_v2.0_Chr7g0182561 Rosa chinensis HOM05D004399 ORTHO05D005303 6.1e-17 92.0 57 80.7
TPR.G35682 Trifolium pratense HOM05D004399 ORTHO05D005303 3.0e-16 89.7 59 76.3
HPP92_015023 Vanilla planifolia HOM05D000240 ORTHO05D001153 9.8e-15 84.7 100 47.0
A09p24540 Brassica napus HOM05D004399 ORTHO05D005303 2.7e-12 76.6 39 87.2
Glyma.07G066400 Glycine max HOM05D004399 ORTHO05D005303 5.9e-12 75.5 53 73.6
SEGI_28424 Sequoiadendron giganteum HOM05D004399 ORTHO05D005303 7.8e-12 75.1 50 72.0
FAN08G1770 Fragaria x ananassa HOM05D004399 ORTHO05D005303 3.0e-11 73.2 122 41.8
SalBow4G0663 Salvia bowleyana HOM05D000195 ORTHO05D000377 3.7e-06 56.2 35 77.1


User provided reference genes

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