Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g14490 Schrenkiella parvula HOM05D005523 ORTHO05D007089 0.0e+00 1238.0 615 100.0
Thhalv10003838m.g Eutrema salsugineum HOM05D005523 ORTHO05D007089 0.0e+00 1102.4 617 89.3
C07p34020 Brassica napus HOM05D005523 ORTHO05D007089 4.2e-312 1074.3 614 87.8
A06p43010 Brassica napus HOM05D005523 ORTHO05D007089 8.4e-312 1072.8 614 88.8
CARHR145990 Cardamine hirsuta HOM05D005523 ORTHO05D007089 1.3e-311 1072.4 615 88.3
BolC7t43916H Brassica oleracea HOM05D005523 ORTHO05D007089 5.0e-311 1070.5 616 87.7
AL5G13440 Arabidopsis lyrata HOM05D005523 ORTHO05D007089 8.7e-308 1059.7 617 87.4
Carub.0005s0279 Capsella rubella HOM05D005523 ORTHO05D007089 3.4e-304 1047.7 617 86.1
AT2G03667 Arabidopsis thaliana HOM05D005523 ORTHO05D007089 6.0e-301 1036.9 617 85.3
BcaB07g30661 Brassica carinata HOM05D005523 ORTHO05D007089 1.6e-290 1002.3 632 82.0
Aa31LG2G7010 Aethionema arabicum HOM05D005523 ORTHO05D007089 4.2e-286 987.6 601 84.5
THA.LOC104805203 Tarenaya hassleriana HOM05D005523 ORTHO05D007089 4.2e-262 907.9 617 74.6
QL03p074443 Quercus lobata HOM05D005523 ORTHO05D007089 1.9e-222 776.2 683 59.9
Thecc.02G329500 Theobroma cacao HOM05D005523 ORTHO05D007089 2.5e-222 775.8 645 62.6
CiPaw.05G124500 Carya illinoinensis HOM05D005523 ORTHO05D007089 1.2e-221 773.5 684 59.1
QL03p074024 Quercus lobata HOM05D005523 ORTHO05D007089 2.8e-221 772.3 683 59.6
Ciclev10033727m.g Citrus clementina HOM05D005523 ORTHO05D007089 5.2e-220 768.1 650 62.0
Gorai.008G176600 Gossypium raimondii HOM05D005523 ORTHO05D007089 6.8e-220 767.7 634 62.1
Gohir.D12G164000 Gossypium hirsutum HOM05D005523 ORTHO05D007089 2.6e-219 765.8 634 62.1
GSVIVG01012228001 Vitis vinifera HOM05D005523 ORTHO05D007089 7.5e-219 764.2 650 61.7
CANSAT64G1787 Cannabis sativa HOM05D005523 ORTHO05D007089 4.9e-218 761.5 668 58.7
RcHm_v2.0_Chr4g0438141 Rosa chinensis HOM05D005523 ORTHO05D007089 9.2e-217 757.3 641 60.5
COL.COLO4_27873 Corchorus olitorius HOM05D005523 ORTHO05D007089 1.2e-216 756.9 641 61.8
Peaxi162Scf00175g00035 Petunia axillaris HOM05D005523 ORTHO05D007089 1.7e-215 753.1 651 61.6
MD13G1061700 Malus domestica HOM05D005523 ORTHO05D007089 6.6e-215 751.1 658 59.9
Sed0024899 Sechium edule HOM05D005523 ORTHO05D007089 1.5e-214 750.0 664 59.2
MD16G1060200 Malus domestica HOM05D005523 ORTHO05D007089 2.8e-213 745.7 652 60.1
CAN.G707.6 Capsicum annuum HOM05D005523 ORTHO05D007089 1.4e-212 743.4 664 59.9
FvH4_4g29880 Fragaria vesca HOM05D005523 ORTHO05D007089 1.8e-212 743.0 640 60.2
Solyc05g012200.3 Solanum lycopersicum HOM05D005523 ORTHO05D007089 1.8e-212 743.0 665 60.6
TWI79G0260 Tripterygium wilfordii HOM05D005523 ORTHO05D007089 1.8e-212 743.0 658 59.7
Duzib251G0966 Durio zibethinus HOM05D005523 ORTHO05D007089 2.3e-212 742.7 649 61.3
Atru.chr11.1618 Acer truncatum HOM05D005523 ORTHO05D007089 4.0e-212 741.9 635 61.9
FAN07G2138 Fragaria x ananassa HOM05D005523 ORTHO05D007089 4.0e-212 741.9 636 59.7
FAN22G0589 Fragaria x ananassa HOM05D005523 ORTHO05D007089 6.8e-212 741.1 636 59.9
CsaV3_5G033360 Cucumis sativus L. HOM05D005523 ORTHO05D007089 4.4e-211 738.4 676 57.2
Prupe.1G288300 Prunus persica HOM05D005523 ORTHO05D007089 4.4e-211 738.4 676 58.7
PGSC0003DMG400028314 Solanum tuberosum HOM05D005523 ORTHO05D007089 9.9e-211 737.3 663 60.2
FAN17G1793 Fragaria x ananassa HOM05D005523 ORTHO05D007089 6.4e-210 734.6 660 57.7
Potri.010G157700 Populus trichocarpa HOM05D005523 ORTHO05D007089 8.3e-210 734.2 666 59.8
Psat7g133840 Pisum sativum HOM05D005523 ORTHO05D007089 2.4e-209 732.6 646 60.2
Lj4g0005251 Lotus japonicus HOM05D005523 ORTHO05D007089 9.2e-209 730.7 648 59.9
FAN12G2921 Fragaria x ananassa HOM05D005523 ORTHO05D007089 7.8e-208 727.6 672 57.0
arahy.Tifrunner.gnm1.ann1.1A68HA Arachis hypogaea HOM05D005523 ORTHO05D007089 3.0e-207 725.7 635 60.3
ECA234G2689 Erigeron canadensis HOM05D005523 ORTHO05D007089 3.0e-207 725.7 646 60.5
Medtr4g083180 Medicago truncatula HOM05D005523 ORTHO05D007089 1.5e-206 723.4 648 59.6
Haze_11899 Corylus avellana HOM05D005523 ORTHO05D007089 2.5e-206 722.6 634 60.4
arahy.Tifrunner.gnm1.ann1.5T11RT Arachis hypogaea HOM05D005523 ORTHO05D007089 4.3e-206 721.8 656 58.7
Ca_18798_v3 Cicer arietinum L. HOM05D005523 ORTHO05D007089 9.5e-206 720.7 638 59.4
Cfa008872 Carpinus fangiana HOM05D005523 ORTHO05D007089 1.2e-205 720.3 647 59.5
MELO3C012156.2 Cucumis melo HOM05D005523 ORTHO05D007089 1.2e-205 720.3 684 55.6
Phvul.002G101900 Phaseolus vulgaris HOM05D005523 ORTHO05D007089 8.1e-205 717.6 650 58.2
Cc11_g11910 Coffea canephora HOM05D005523 ORTHO05D007089 1.1e-204 717.2 666 58.1
EL10Ac6g15006 Beta vulgaris HOM05D005523 ORTHO05D007089 1.8e-204 716.5 658 55.9
Glyma.20G025400 Glycine max HOM05D005523 ORTHO05D007089 5.8e-203 711.4 654 57.6
Migut.L01183 Erythranthe guttata HOM05D005523 ORTHO05D007089 7.6e-203 711.1 647 58.3
Lsat_1_v5_gn_4_11761 Lactuca sativa HOM05D005523 ORTHO05D007089 2.9e-202 709.1 638 59.7
TPR.G34024 Trifolium pratense HOM05D005523 ORTHO05D007089 8.4e-202 707.6 648 58.8
PSO478G5042 Papaver somniferum HOM05D005523 ORTHO05D007089 1.9e-201 706.4 659 57.8
Nitab4.5_0007061g0020 Nicotiana tabacum HOM05D005523 ORTHO05D007089 3.2e-201 705.7 661 58.1
HanXRQChr17g0552771 Helianthus annuus HOM05D005523 ORTHO05D007089 4.1e-201 705.3 641 59.6
Rhsim02G0238300 Rhododendron simsii HOM05D005523 ORTHO05D007089 2.7e-200 702.6 721 53.3
Lalb_Chr05g0219911 Lupinus albus HOM05D005523 ORTHO05D007089 7.8e-200 701.0 662 56.6
Sopen05g007030 Solanum pennellii HOM05D005523 ORTHO05D007089 1.0e-199 700.7 561 64.5
PSO017G3752 Papaver somniferum HOM05D005523 ORTHO05D007089 1.1e-198 697.2 659 57.4
SalBow2G2481 Salvia bowleyana HOM05D005523 ORTHO05D007089 1.1e-198 697.2 672 55.2
Hund25171 Selenicereus undatus HOM05D005523 ORTHO05D007089 4.3e-198 695.3 661 56.7
AUR62003091 Chenopodium quinoa HOM05D005523 ORTHO05D007089 5.6e-198 694.9 624 57.2
Aqoxy3G00520 Aquilegia oxysepala HOM05D005523 ORTHO05D007089 2.1e-197 693.0 706 54.1
Nn4g23450 Nelumbo nucifera HOM05D005523 ORTHO05D007089 2.0e-195 686.4 719 53.8
Manes.05G109800 Manihot esculenta HOM05D005523 ORTHO05D007089 2.6e-195 686.0 619 58.6
vmacro10430 Vaccinium macrocarpon HOM05D005523 ORTHO05D007089 7.1e-193 677.9 681 55.1
Oeu021803.1 Olea europaea HOM05D005523 ORTHO05D007089 1.2e-192 677.2 625 58.4
DCAR_026677 Daucus carota HOM05D005523 ORTHO05D007089 9.6e-190 667.5 630 57.5
PGR119G1690 Punica granatum HOM05D005523 ORTHO05D007089 1.3e-189 667.2 638 57.8
Nitab4.5_0000231g0170 Nicotiana tabacum HOM05D005523 ORTHO05D007089 1.5e-187 660.2 642 57.2
AUR62007908 Chenopodium quinoa HOM05D005523 ORTHO05D007089 4.5e-187 658.7 609 56.3
Rhsim09G0126700 Rhododendron simsii HOM05D005523 ORTHO05D007089 6.7e-183 644.8 660 54.1
Cc03_g11190 Coffea canephora HOM05D005523 ORTHO05D007089 1.9e-182 643.3 532 62.8
Lj6A778G61 Lonicera japonica HOM05D005523 ORTHO05D007089 1.3e-181 640.6 735 50.2
Sc14g0007970 Simmondsia chinensis HOM05D005523 ORTHO05D007089 3.1e-180 636.0 608 54.6
HPP92_001825 Vanilla planifolia HOM05D005523 ORTHO05D007089 6.2e-173 611.7 632 51.9
SGA_v2.0_scaffold16G07795 Striga asiatica HOM05D005523 ORTHO05D007089 1.5e-171 607.1 655 51.1
Zm00001eb029510 Zea mays HOM05D005523 ORTHO05D007089 6.5e-162 575.1 553 55.5
unitig_26.g10286 Utricularia gibba HOM05D005523 ORTHO05D007089 3.0e-159 566.2 643 49.8
Pp3c13_5080 Physcomitrium patens HOM05D005523 ORTHO05D007089 5.1e-159 565.5 681 47.4
SMO364G0955 Selaginella moellendorffii HOM05D005523 ORTHO05D007089 1.2e-155 554.3 588 51.4
CSS0034602 Camellia sinensis var. sinensis HOM05D005523 ORTHO05D007089 7.9e-152 541.6 412 67.5
Eucgr.G02442 Eucalyptus grandis HOM05D005523 ORTHO05D007089 1.4e-151 540.8 420 65.7
AagrBONN_evm.TU.Sc2ySwM_228.676 Anthoceros agrestis HOM05D005523 ORTHO05D007089 6.7e-151 538.5 639 48.2
Gohir.A12G160700 Gossypium hirsutum HOM05D005523 ORTHO05D007089 3.4e-147 526.2 361 71.7
TAR374G1461 Trochodendron aralioides HOM05D005523 ORTHO05D007089 2.9e-146 523.1 440 63.2
Mapoly0013s0146 Marchantia polymorpha HOM05D005523 ORTHO05D007089 1.4e-124 451.1 488 48.2
VMungo0251G0731 Vigna mungo HOM05D005523 ORTHO05D007089 9.5e-121 438.3 284 75.0
MBI19_g25293_MAGBIO Magnolia biondii HOM05D005523 ORTHO05D007089 6.1e-120 435.6 469 50.7
Oeu021804.1 Olea europaea HOM05D005523 ORTHO05D007089 2.4e-116 423.7 465 51.2
BcaC04g21469 Brassica carinata HOM05D000070 ORTHO05D006344 5.9e-115 419.1 337 69.7
Actinidia28650 Actinidia chinensis HOM05D005523 ORTHO05D007089 1.9e-108 397.5 456 53.9
BcaC06g31164 Brassica carinata HOM05D005523 ORTHO05D006344 3.7e-101 373.2 196 93.9
Actinidia36738 Actinidia chinensis HOM05D005523 ORTHO05D007089 2.7e-99 367.1 252 75.4
BolC9t56002H Brassica oleracea HOM05D005523 ORTHO05D007089 6.6e-98 362.5 333 62.2
C09p31430 Brassica napus HOM05D000070 ORTHO05D006344 3.3e-97 360.1 333 62.2
CDE10G0904 Ceratophyllum demersum HOM05D005523 ORTHO05D007089 2.8e-96 357.1 264 69.7
ClCG05G023660 Citrullus lanatus HOM05D005523 ORTHO05D007089 1.1e-95 355.1 451 45.0
ATR0177G042 Amborella trichopoda HOM05D005523 ORTHO05D007089 2.7e-91 340.5 397 47.9
PRCOL_00003408 Prasinoderma coloniale HOM05D005523 ORTHO05D007089 4.3e-89 333.2 561 38.3
MBI19_g44450_MAGBIO Magnolia biondii HOM05D005523 ORTHO05D007089 5.6e-89 332.8 266 66.2
CBR_g50115 Chara braunii HOM05D005523 ORTHO05D007089 8.7e-82 308.9 442 40.3
Actinidia14169 Actinidia chinensis HOM05D005523 ORTHO05D007089 1.9e-81 307.8 187 80.7
VMungo0251G1186 Vigna mungo HOM05D005523 ORTHO05D007089 6.0e-75 286.2 359 45.1
Actinidia12916 Actinidia chinensis HOM05D005523 ORTHO05D007089 8.7e-74 282.3 610 35.6
Lsat_1_v5_gn_7_112061 Lactuca sativa HOM05D005523 ORTHO05D007089 1.5e-73 281.6 306 54.6
RcHm_v2.0_Chr7g0182531 Rosa chinensis HOM05D005523 ORTHO05D007089 2.5e-73 280.8 174 77.0
Lsat_1_v5_gn_5_143020 Lactuca sativa HOM05D005523 ORTHO05D007089 2.2e-69 267.7 184 72.8
Cre07.g321050 Chlamydomonas reinhardtii HOM05D005523 ORTHO05D007089 3.5e-67 260.4 361 41.8
Lsat_1_v5_gn_5_70240 Lactuca sativa HOM05D005523 ORTHO05D007089 4.6e-67 260.0 184 71.7
Cpa.g.sc1.134 Carica papaya HOM05D005523 ORTHO05D007089 1.8e-66 258.1 151 81.5
BcaB03g12091 Brassica carinata HOM05D005523 ORTHO05D007089 3.1e-63 247.3 131 90.8
CDE10G0400 Ceratophyllum demersum HOM05D005523 ORTHO05D007089 2.2e-53 214.5 380 35.8
Cpa.g.sc1.132 Carica papaya HOM05D005523 ORTHO05D007089 4.6e-51 206.8 441 34.7
CSS0024141 Camellia sinensis var. sinensis HOM05D005523 ORTHO05D007089 1.2e-30 139.0 204 37.7
TAR374G1311 Trochodendron aralioides HOM05D005523 ORTHO05D007089 3.0e-26 124.4 208 38.0
CSS0004547 Camellia sinensis var. sinensis HOM05D005523 ORTHO05D007089 1.4e-23 115.5 117 50.4
Lsat_1_v5_gn_7_82480 Lactuca sativa HOM05D005523 ORTHO05D007089 1.4e-23 115.5 152 49.3
EL10Ac6g15009 Beta vulgaris HOM05D005523 ORTHO05D007089 1.6e-22 112.1 215 34.9
Os12g0574900 Oryza sativa ssp. japonica HOM05D005523 ORTHO05D007089 3.5e-22 110.9 167 37.7
CSS0023178 Camellia sinensis var. sinensis HOM05D005523 ORTHO05D007089 5.0e-21 107.1 114 47.4
SEGI_10872 Sequoiadendron giganteum HOM05D005523 ORTHO05D007089 5.7e-17 93.6 61 60.7
CAN.G553.8 Capsicum annuum HOM05D001766 ORTHO05D043404 7.5e-17 93.2 85 57.6
Cpa.g.sc1.135 Carica papaya HOM05D005523 ORTHO05D007089 1.0e-13 82.8 55 80.0
HanXRQChr15g0470871 Helianthus annuus HOM05D005523 ORTHO05D007089 1.0e-13 82.8 75 50.7
CSS0028074 Camellia sinensis var. sinensis HOM05D005523 ORTHO05D026295 3.8e-13 80.9 114 39.5
CAN.G602.9 Capsicum annuum HOM05D005523 ORTHO05D007089 4.2e-12 77.4 55 69.1
HanXRQChr16g0520621 Helianthus annuus HOM05D005523 ORTHO05D007089 4.1e-07 60.8 62 53.2
MBI19_g26864_MAGBIO Magnolia biondii HOM05D005523 ORTHO05D007089 7.0e-07 60.1 38 65.8


User provided reference genes

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