Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g13680 Schrenkiella parvula HOM05D006925 ORTHO05D008830 1.9e-170 602.4 305 100.0
AL5G11640 Arabidopsis lyrata HOM05D006925 ORTHO05D008830 5.0e-155 551.2 306 92.5
BraA06t27246Z Brassica rapa HOM05D006925 ORTHO05D008830 4.2e-154 548.1 312 91.0
A06p43640 Brassica napus HOM05D006925 ORTHO05D008830 5.5e-154 547.7 313 90.7
BcaC06g34054 Brassica carinata HOM05D006925 ORTHO05D008830 2.2e-150 535.8 312 89.4
C07p33220 Brassica napus HOM05D006925 ORTHO05D008830 2.2e-150 535.8 312 89.4
BolC7t43833H Brassica oleracea HOM05D006925 ORTHO05D008830 2.2e-150 535.8 312 89.4
BcaC06g31233 Brassica carinata HOM05D006925 ORTHO05D008830 4.1e-149 531.6 310 89.7
Aa31LG2G7670 Aethionema arabicum HOM05D006925 ORTHO05D008830 4.8e-134 481.5 305 82.3
THA.LOC104824095 Tarenaya hassleriana HOM05D006925 ORTHO05D008830 3.1e-125 452.2 257 86.8
Thhalv10004663m.g Eutrema salsugineum HOM05D006925 ORTHO05D008830 9.1e-125 450.7 263 87.5
Carub.0005s0146 Capsella rubella HOM05D006925 ORTHO05D008830 1.0e-120 437.2 222 98.6
Cfa004416 Carpinus fangiana HOM05D006925 ORTHO05D008830 1.2e-116 423.7 267 77.5
CiPaw.05G000400 Carya illinoinensis HOM05D006925 ORTHO05D008830 1.0e-115 420.6 266 75.9
TWI14G0460 Tripterygium wilfordii HOM05D006925 ORTHO05D008830 5.0e-115 418.3 276 75.7
Dinv30983 Davidia involucrata HOM05D006925 ORTHO05D008830 6.6e-115 417.9 292 73.3
Duzib160G0166 Durio zibethinus HOM05D006925 ORTHO05D008830 2.5e-114 416.0 274 74.1
GSVIVG01023121001 Vitis vinifera HOM05D006925 ORTHO05D008830 4.3e-114 415.2 268 76.5
Migut.B00701 Erythranthe guttata HOM05D006925 ORTHO05D008830 5.6e-114 414.8 295 71.9
Hma1.2p1_0157F.1_g069250 Hydrangea macrophylla HOM05D006925 ORTHO05D008830 5.6e-114 414.8 262 77.1
MSTRG.16455 Avicennia marina HOM05D006925 ORTHO05D008830 1.2e-113 413.7 292 70.9
RcHm_v2.0_Chr7g0218321 Rosa chinensis HOM05D006925 ORTHO05D008830 1.2e-113 413.7 294 71.4
Gorai.011G089700 Gossypium raimondii HOM05D006925 ORTHO05D008830 1.6e-113 413.3 278 74.8
Haze_09956 Corylus avellana HOM05D006925 ORTHO05D008830 2.8e-113 412.5 296 70.9
COL.COLO4_31098 Corchorus olitorius HOM05D006925 ORTHO05D008830 3.6e-113 412.1 266 76.3
Glyma.07G271000 Glycine max HOM05D006925 ORTHO05D008830 4.7e-113 411.8 274 74.8
Gohir.D10G082800 Gossypium hirsutum HOM05D006925 ORTHO05D008830 1.0e-112 410.6 278 74.5
CSS0004280 Camellia sinensis var. sinensis HOM05D006925 ORTHO05D008830 1.4e-112 410.2 269 75.5
PGSC0003DMG400003436 Solanum tuberosum HOM05D006925 ORTHO05D008830 1.8e-112 409.8 266 75.2
CSS0028149 Camellia sinensis var. sinensis HOM05D006925 ORTHO05D008830 2.3e-112 409.5 304 69.4
Ah.02g128580 Amaranthus hybridus HOM05D006925 ORTHO05D008830 5.2e-112 408.3 277 73.6
PGR042G2053 Punica granatum HOM05D006925 ORTHO05D008830 1.2e-111 407.1 271 75.6
VMungo1215G1006 Vigna mungo HOM05D006925 ORTHO05D008830 1.5e-111 406.8 263 75.3
Sopen10g013620 Solanum pennellii HOM05D006925 ORTHO05D008830 2.0e-111 406.4 266 75.2
Nitab4.5_0002274g0030 Nicotiana tabacum HOM05D006925 ORTHO05D008830 2.6e-111 406.0 264 75.8
CAN.G402.4 Capsicum annuum HOM05D006925 ORTHO05D008830 4.4e-111 405.2 266 75.6
Cc02_g23820 Coffea canephora HOM05D006925 ORTHO05D008830 4.4e-111 405.2 267 76.0
DCAR_004828 Daucus carota HOM05D006925 ORTHO05D008830 5.7e-111 404.8 279 71.3
arahy.Tifrunner.gnm1.ann1.EDE5FN Arachis hypogaea HOM05D006925 ORTHO05D008830 7.5e-111 404.4 265 77.4
QL02p103778 Quercus lobata HOM05D006925 ORTHO05D008830 7.5e-111 404.4 291 70.8
Solyc10g044840.2 Solanum lycopersicum HOM05D006925 ORTHO05D008830 9.8e-111 404.1 266 74.4
Sabra03G0019700 Salix brachista HOM05D006925 ORTHO05D000812 2.9e-110 402.5 303 67.0
Potri.003G046600 Populus trichocarpa HOM05D006925 ORTHO05D008830 4.9e-110 401.7 284 72.5
ClCG10G007640 Citrullus lanatus HOM05D006925 ORTHO05D008830 8.3e-110 401.0 252 77.8
HanXRQChr03g0071141 Helianthus annuus HOM05D006925 ORTHO05D008830 1.4e-109 400.2 259 76.8
FAN18G1352 Fragaria x ananassa HOM05D006925 ORTHO05D008830 4.1e-109 398.7 246 80.1
arahy.Tifrunner.gnm1.ann1.MTF64G Arachis hypogaea HOM05D006925 ORTHO05D008830 7.0e-109 397.9 265 76.2
FvH4_5g27220 Fragaria vesca HOM05D006925 ORTHO05D008830 1.2e-108 397.1 246 79.7
FAN08G3037 Fragaria x ananassa HOM05D006925 ORTHO05D008830 1.2e-108 397.1 244 80.3
MBI06_g17054_MAGBIO Magnolia biondii HOM05D006925 ORTHO05D008830 1.6e-108 396.7 285 69.5
ECA248G0237 Erigeron canadensis HOM05D002199 ORTHO05D007829 5.9e-108 394.8 255 76.5
Prupe.1G587400 Prunus persica HOM05D006925 ORTHO05D008830 5.9e-108 394.8 282 71.3
MD15G1445500 Malus domestica HOM05D006925 ORTHO05D008830 7.8e-108 394.4 273 73.3
CANSAT01G0563 Cannabis sativa HOM05D006925 ORTHO05D008830 3.9e-107 392.1 276 72.5
Aqoxy5G01835 Aquilegia oxysepala HOM05D006925 ORTHO05D008830 5.0e-107 391.7 288 69.4
Peaxi162Scf00055g00018 Petunia axillaris HOM05D006925 ORTHO05D008830 5.0e-107 391.7 287 69.3
unitig_8.g4519 Utricularia gibba HOM05D006925 ORTHO05D008830 6.6e-107 391.3 262 73.3
Lj4g0023352 Lotus japonicus HOM05D006925 ORTHO05D008830 8.6e-107 391.0 266 73.7
CDE05G0936 Ceratophyllum demersum HOM05D006925 ORTHO05D008830 4.3e-106 388.7 257 73.9
Actinidia00135 Actinidia chinensis HOM05D006925 ORTHO05D008830 5.6e-106 388.3 249 75.9
ATR1089G139 Amborella trichopoda HOM05D006925 ORTHO05D008830 2.1e-105 386.3 285 68.4
Lalb_Chr07g0176851 Lupinus albus HOM05D006925 ORTHO05D008830 4.7e-105 385.2 273 71.1
CsaV3_3G006780 Cucumis sativus L. HOM05D006925 ORTHO05D008830 1.8e-104 383.3 246 74.8
PSO210G4845 Papaver somniferum HOM05D006925 ORTHO05D008830 1.8e-104 383.3 265 72.5
Lsat_1_v5_gn_7_69720 Lactuca sativa HOM05D006925 ORTHO05D008830 7.0e-101 371.3 317 63.1
FAN13G1230 Fragaria x ananassa HOM05D006925 ORTHO05D008830 1.1e-98 364.0 264 70.8
Gohir.A10G068400 Gossypium hirsutum HOM05D006925 ORTHO05D008830 2.1e-97 359.8 245 73.5
Nn5g27113 Nelumbo nucifera HOM05D006925 ORTHO05D008830 2.1e-97 359.8 229 76.0
Medtr4g134410 Medicago truncatula HOM05D006925 ORTHO05D008830 1.4e-96 357.1 252 69.8
Thecc.06G062200 Theobroma cacao HOM05D006925 ORTHO05D008830 1.8e-96 356.7 230 76.1
AT2G02410 Arabidopsis thaliana HOM05D006925 ORTHO05D008830 4.0e-96 355.5 244 79.1
SGA_v2.0_scaffold254G45226 Striga asiatica HOM05D006925 ORTHO05D008830 1.7e-94 350.1 336 55.7
Nitab4.5_0000288g0050 Nicotiana tabacum HOM05D006925 ORTHO05D008830 4.1e-93 345.5 266 66.5
Eucgr.G00053 Eucalyptus grandis HOM05D006925 ORTHO05D008830 7.8e-92 341.3 219 78.1
CARHR144990 Cardamine hirsuta HOM05D006925 ORTHO05D008830 1.9e-90 336.7 217 82.0
HPP92_001204 Vanilla planifolia HOM05D006925 ORTHO05D008830 1.9e-90 336.7 244 67.6
Sc03g0005610 Simmondsia chinensis HOM05D006925 ORTHO05D008830 4.3e-90 335.5 218 74.8
Phvul.003G090400 Phaseolus vulgaris HOM05D006925 ORTHO05D008830 7.3e-90 334.7 213 74.6
Psat4g001760 Pisum sativum HOM05D006925 ORTHO05D008830 4.7e-89 332.0 254 63.0
Ca_13518_v3 Cicer arietinum L. HOM05D006925 ORTHO05D008830 2.4e-85 319.7 213 71.8
Sed0012673 Sechium edule HOM05D006925 ORTHO05D008830 2.7e-84 316.2 204 74.0
Manes.06G015100 Manihot esculenta HOM05D006925 ORTHO05D008830 3.5e-84 315.8 207 72.5
EL10Ac6g13952 Beta vulgaris HOM05D006925 ORTHO05D008830 3.6e-81 305.8 274 58.4
Lj5A307T31 Lonicera japonica HOM05D006925 ORTHO05D008830 3.6e-81 305.8 260 60.0
Mapoly0001s0380 Marchantia polymorpha HOM05D006925 ORTHO05D008830 1.4e-80 303.9 256 61.3
AUR62032491 Chenopodium quinoa HOM05D006925 ORTHO05D008830 3.1e-80 302.8 196 74.0
Pp3c15_4340 Physcomitrium patens HOM05D006925 ORTHO05D008830 3.0e-75 286.2 245 57.1
AUR62040119 Chenopodium quinoa HOM05D006925 ORTHO05D008830 3.9e-75 285.8 308 53.2
Pp3c9_8480 Physcomitrium patens HOM05D006925 ORTHO05D008830 1.9e-74 283.5 269 54.6
MELO3C016443.2 Cucumis melo HOM05D006925 ORTHO05D008830 7.3e-74 281.6 167 78.4
Hund15314 Selenicereus undatus HOM05D006925 ORTHO05D008830 1.3e-73 280.8 207 68.6
SMO358G0233 Selaginella moellendorffii HOM05D006925 ORTHO05D008830 3.5e-68 262.7 246 54.1
vmacro01630 Vaccinium macrocarpon HOM05D006925 ORTHO05D008830 7.9e-68 261.5 204 65.2
TAR628G1169 Trochodendron aralioides HOM05D006925 ORTHO05D008830 3.9e-67 259.2 212 62.7
TPR.G5931 Trifolium pratense HOM05D006925 ORTHO05D008830 1.3e-65 254.2 235 55.3
Zm00001eb064090 Zea mays HOM05D006925 ORTHO05D008830 3.8e-62 242.7 181 66.3
AagrBONN_evm.TU.Sc2ySwM_369.585 Anthoceros agrestis HOM05D006925 ORTHO05D008830 4.9e-62 242.3 226 54.9
SEGI_06138 Sequoiadendron giganteum HOM05D006925 ORTHO05D008830 2.8e-57 226.5 271 46.1
Sabra03G0019900 Salix brachista HOM05D006925 ORTHO05D008830 2.0e-47 193.7 175 56.6
Rhsim11G0114700 Rhododendron simsii HOM05D006925 ORTHO05D008830 2.6e-47 193.4 255 46.7
Ciclev10003645m.g Citrus clementina HOM05D006925 ORTHO05D008830 1.6e-44 184.1 178 57.3
AL5G11650 Arabidopsis lyrata HOM05D006925 ORTHO05D008830 1.3e-43 181.0 94 97.9
Glyma.17G002900 Glycine max HOM05D006925 ORTHO05D008830 4.4e-34 149.4 92 81.5
Os03g0843200 Oryza sativa ssp. japonica HOM05D006925 ORTHO05D008830 1.4e-29 134.4 107 61.7
SMO201G0205 Selaginella moellendorffii HOM05D006925 ORTHO05D008830 2.8e-25 120.2 98 54.1
SEGI_30664 Sequoiadendron giganteum HOM05D006925 ORTHO05D008830 1.6e-20 104.4 140 45.0
CBR_g49407 Chara braunii HOM05D000019 ORTHO05D000002 4.7e-20 102.8 121 47.1
Oeu016658.1 Olea europaea HOM05D006925 ORTHO05D008830 3.0e-19 100.1 76 64.5
Oeu016657.1 Olea europaea HOM05D006925 ORTHO05D008830 2.6e-18 97.1 60 80.0
SMO199G0001 Selaginella moellendorffii HOM05D006925 ORTHO05D008830 4.4e-18 96.3 98 49.0
TAR628G1563 Trochodendron aralioides HOM05D006925 ORTHO05D008830 2.8e-17 93.6 56 76.8
PRCOL_00002508 Prasinoderma coloniale HOM05D006925 ORTHO05D008830 1.6e-12 77.8 218 29.4
EL10Ac6g13953 Beta vulgaris HOM05D006925 ORTHO05D008830 8.8e-11 72.0 51 68.6
CBR_g46374 Chara braunii HOM05D000019 ORTHO05D000353 1.3e-09 68.2 47 63.8
Glyma.20G064100 Glycine max HOM05D006925 ORTHO05D008830 1.8e-08 64.3 41 70.7
Ciclev10003790m.g Citrus clementina HOM05D006925 ORTHO05D008830 7.0e-08 62.4 35 88.6
MCO01G431 Micromonas commoda HOM05D006925 ORTHO05D008830 2.7e-07 60.5 238 25.6
vmacro01629 Vaccinium macrocarpon HOM05D006925 ORTHO05D008830 7.7e-07 58.9 54 53.7


User provided reference genes

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