Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g13290 Schrenkiella parvula HOM05D007890 ORTHO05D009945 6.0e-86 320.9 168 100.0
BcaC06g34102 Brassica carinata HOM05D007890 ORTHO05D009945 2.6e-65 252.3 173 80.9
C07p32670 Brassica napus HOM05D001297 ORTHO05D001135 2.6e-65 252.3 173 80.9
BolC7t43788H Brassica oleracea HOM05D001297 ORTHO05D001135 3.4e-65 251.9 174 80.5
BcaC06g31267 Brassica carinata HOM05D007890 ORTHO05D009945 3.8e-64 248.4 169 81.1
A06p43960 Brassica napus HOM05D001297 ORTHO05D001135 2.5e-63 245.7 172 78.5
BraA06t27271Z Brassica rapa HOM05D001297 ORTHO05D001135 2.5e-63 245.7 172 78.5
Carub.0005s0083 Capsella rubella HOM05D007890 ORTHO05D009945 1.3e-59 233.4 169 76.9
Thhalv10005015m.g Eutrema salsugineum HOM05D007890 ORTHO05D009945 3.1e-58 228.8 173 72.3
AL5G10980 Arabidopsis lyrata HOM05D007890 ORTHO05D009945 9.0e-58 227.3 172 75.0
AT2G01870 Arabidopsis thaliana HOM05D007890 ORTHO05D009945 7.7e-57 224.2 168 74.4
CARHR144430 Cardamine hirsuta HOM05D007890 ORTHO05D009945 6.5e-56 221.1 170 72.4
Aa31LG2G8040 Aethionema arabicum HOM05D007890 ORTHO05D009945 2.8e-35 152.5 188 49.5
THA.LOC104801952 Tarenaya hassleriana HOM05D007890 ORTHO05D009945 1.5e-23 113.6 157 46.5
Ah.06g194130 Amaranthus hybridus HOM05D007890 ORTHO05D009945 7.0e-18 94.7 129 46.5
Nitab4.5_0002741g0090 Nicotiana tabacum HOM05D007890 ORTHO05D009945 2.3e-16 89.7 123 43.9
MD03G1174000 Malus domestica HOM05D007890 ORTHO05D009945 1.9e-15 86.7 134 44.8
GSVIVG01025250001 Vitis vinifera HOM05D007890 ORTHO05D009945 1.2e-14 84.0 112 47.3
PGSC0003DMG400033336 Solanum tuberosum HOM05D007890 ORTHO05D009945 1.6e-14 83.6 122 42.6
Thecc.09G234600 Theobroma cacao HOM05D007890 ORTHO05D009945 1.6e-14 83.6 137 40.1
Lj1P329T66 Lonicera japonica HOM05D007890 ORTHO05D009945 2.1e-14 83.2 153 42.5
Gohir.A05G069600 Gossypium hirsutum HOM05D007890 ORTHO05D009945 2.8e-14 82.8 131 40.5
Gohir.D05G072500 Gossypium hirsutum HOM05D007890 ORTHO05D009945 2.8e-14 82.8 143 39.2
Gorai.009G073500 Gossypium raimondii HOM05D007890 ORTHO05D009945 3.6e-14 82.4 131 40.5
EL10Ac4g10243 Beta vulgaris HOM05D007890 ORTHO05D009945 4.7e-14 82.0 118 42.4
QL01p004625 Quercus lobata HOM05D007890 ORTHO05D009945 1.0e-13 80.9 146 38.4
Ciclev10016956m.g Citrus clementina HOM05D007890 ORTHO05D009945 1.8e-13 80.1 110 42.7
Rhsim13G0220700 Rhododendron simsii HOM05D007890 ORTHO05D009945 1.8e-13 80.1 126 45.2
Duzib170G0138 Durio zibethinus HOM05D007890 ORTHO05D009945 2.3e-13 79.7 131 40.5
TAR633G1231 Trochodendron aralioides HOM05D007890 ORTHO05D009945 2.3e-13 79.7 119 42.0
Peaxi162Scf00004g02526 Petunia axillaris HOM05D007890 ORTHO05D009945 3.0e-13 79.3 134 41.0
Potri.001G257400 Populus trichocarpa HOM05D007890 ORTHO05D009945 4.0e-13 79.0 150 39.3
Eucgr.B03690 Eucalyptus grandis HOM05D007890 ORTHO05D009945 5.2e-13 78.6 138 42.0
MSTRG.17595 Avicennia marina HOM05D007890 ORTHO05D009945 6.8e-13 78.2 127 40.2
vmacro04152 Vaccinium macrocarpon HOM05D007890 ORTHO05D009945 8.9e-13 77.8 123 46.3
Atru.chr3.2706 Acer truncatum HOM05D007890 ORTHO05D009945 1.2e-12 77.4 143 36.4
Hma1.2p1_0606F.1_g188050 Hydrangea macrophylla HOM05D007890 ORTHO05D009945 1.2e-12 77.4 133 42.1
Solyc11g065680.1 Solanum lycopersicum HOM05D007890 ORTHO05D009945 1.5e-12 77.0 110 44.5
Sopen11g025420 Solanum pennellii HOM05D007890 ORTHO05D009945 1.5e-12 77.0 110 44.5
Oeu025872.1 Olea europaea HOM05D007890 ORTHO05D009945 2.0e-12 76.6 123 42.3
Dinv36254 Davidia involucrata HOM05D007890 ORTHO05D009945 2.6e-12 76.3 151 42.4
MD11G1192200 Malus domestica HOM05D007890 ORTHO05D009945 3.4e-12 75.9 131 43.5
TWI32G0791 Tripterygium wilfordii HOM05D007890 ORTHO05D009945 3.4e-12 75.9 131 40.5
Actinidia06910 Actinidia chinensis HOM05D007890 ORTHO05D009945 4.4e-12 75.5 124 43.5
Sabra16G0157400 Salix brachista HOM05D007890 ORTHO05D009945 4.4e-12 75.5 166 34.9
PSO423G0105 Papaver somniferum HOM05D007890 ORTHO05D009945 9.8e-12 74.3 145 39.3
CDE05G2272 Ceratophyllum demersum HOM05D007890 ORTHO05D009945 1.7e-11 73.6 132 37.1
Lj6g0024098 Lotus japonicus HOM05D007890 ORTHO05D009945 2.2e-11 73.2 114 46.5
Glyma.08G336100 Glycine max HOM05D007890 ORTHO05D009945 2.9e-11 72.8 100 49.0
PSO724G0038 Papaver somniferum HOM05D007890 ORTHO05D009945 2.9e-11 72.8 124 40.3
SalBow5G2971 Salvia bowleyana HOM05D007890 ORTHO05D009945 4.9e-11 72.0 120 41.7
Aqoxy2G00189 Aquilegia oxysepala HOM05D007890 ORTHO05D009945 1.1e-10 70.9 120 41.7
Cfa009778 Carpinus fangiana HOM05D007890 ORTHO05D009945 1.1e-10 70.9 132 40.2
MELO3C014589.2 Cucumis melo HOM05D007890 ORTHO05D009945 1.4e-10 70.5 136 39.0
TPR.G14719 Trifolium pratense HOM05D005961 ORTHO05D007391 1.8e-10 70.1 157 38.2
FAN21G3432 Fragaria x ananassa HOM05D007890 ORTHO05D009945 3.2e-10 69.3 117 39.3
Migut.N02322 Erythranthe guttata HOM05D007890 ORTHO05D009945 4.1e-10 68.9 154 35.1
ClCG02G023170 Citrullus lanatus HOM05D007890 ORTHO05D009945 5.4e-10 68.6 132 39.4
FAN16G0819 Fragaria x ananassa HOM05D007890 ORTHO05D009945 5.4e-10 68.6 114 40.4
HanXRQChr08g0209341 Helianthus annuus HOM05D007890 ORTHO05D009945 9.2e-10 67.8 131 43.5
CsaV3_6G039340 Cucumis sativus L. HOM05D007890 ORTHO05D009945 1.2e-09 67.4 136 39.0
FvH4_3g28750 Fragaria vesca HOM05D007890 ORTHO05D009945 1.2e-09 67.4 118 39.0
FAN11G2622 Fragaria x ananassa HOM05D007890 ORTHO05D009945 1.2e-09 67.4 118 39.0
VMungo0540G1907 Vigna mungo HOM05D007890 ORTHO05D009945 1.2e-09 67.4 107 42.1
RcHm_v2.0_Chr5g0052301 Rosa chinensis HOM05D007890 ORTHO05D009945 1.6e-09 67.0 107 43.9
Manes.13G093240 Manihot esculenta HOM05D007890 ORTHO05D009945 2.7e-09 66.2 110 42.7
Phvul.006G062000 Phaseolus vulgaris HOM05D007890 ORTHO05D009945 1.0e-08 64.3 134 37.3
Lsat_1_v5_gn_2_29200 Lactuca sativa HOM05D007890 ORTHO05D009945 1.3e-08 63.9 99 44.4
Lalb_Chr15g0082521 Lupinus albus HOM05D007890 ORTHO05D009945 1.3e-08 63.9 105 43.8
Nitab4.5_0001587g0050 Nicotiana tabacum HOM05D007890 ORTHO05D009945 1.3e-08 63.9 65 52.3
Psat5g163960 Pisum sativum HOM05D007890 ORTHO05D009945 1.7e-08 63.5 104 46.2
arahy.Tifrunner.gnm1.ann1.I2HDTW Arachis hypogaea HOM05D007890 ORTHO05D009945 3.0e-08 62.8 106 45.3
Sed0013757 Sechium edule HOM05D007890 ORTHO05D009945 5.0e-08 62.0 98 41.8
CiPaw.13G159700 Carya illinoinensis HOM05D007890 ORTHO05D009945 6.6e-08 61.6 139 36.0
MBI02_g09445_MAGBIO Magnolia biondii HOM05D007890 ORTHO05D009945 6.6e-08 61.6 111 36.9
arahy.Tifrunner.gnm1.ann1.SWS7SX Arachis hypogaea HOM05D007890 ORTHO05D009945 8.6e-08 61.2 106 44.3
Medtr3g061480 Medicago truncatula HOM05D007890 ORTHO05D009945 1.1e-07 60.8 140 35.0
Prupe.4G250100 Prunus persica HOM05D007890 ORTHO05D009945 1.5e-07 60.5 102 39.2
Cpa.g.sc84.47 Carica papaya HOM05D007890 ORTHO05D009945 5.6e-07 58.5 153 34.0
CSS0004739 Camellia sinensis var. sinensis HOM05D007890 ORTHO05D009945 7.3e-07 58.2 45 66.7
ECA233G3563 Erigeron canadensis HOM05D000013 ORTHO05D004590 7.3e-07 58.2 123 36.6
TAR633G1577 Trochodendron aralioides HOM05D007890 ORTHO05D009945 9.5e-07 57.8 41 61.0


User provided reference genes

Program Settings