Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g13280 Schrenkiella parvula HOM05D006770 ORTHO05D008356 9.6e-270 932.9 483 100.0
Thhalv10004104m.g Eutrema salsugineum HOM05D006770 ORTHO05D008356 1.3e-242 842.8 485 89.3
AT2G01860 Arabidopsis thaliana HOM05D006770 ORTHO05D008356 2.9e-226 788.5 485 85.8
AL5G10970 Arabidopsis lyrata HOM05D006770 ORTHO05D008356 6.1e-224 780.8 485 84.1
CARHR144420 Cardamine hirsuta HOM05D006770 ORTHO05D008356 8.8e-223 776.9 481 85.0
Carub.0005s0082 Capsella rubella HOM05D006770 ORTHO05D008356 4.1e-220 768.1 487 83.4
BcaC06g31269 Brassica carinata HOM05D006770 ORTHO05D008356 6.5e-218 760.8 480 82.1
BraA06t27272Z Brassica rapa HOM05D006770 ORTHO05D008356 4.2e-217 758.1 481 83.8
BcaC06g34103 Brassica carinata HOM05D006770 ORTHO05D008356 3.6e-216 755.0 482 82.0
A06p43970 Brassica napus HOM05D006770 ORTHO05D008356 6.1e-216 754.2 482 82.0
C07p32660 Brassica napus HOM05D006770 ORTHO05D008356 7.5e-214 747.3 482 81.7
BolC7t43787H Brassica oleracea HOM05D006770 ORTHO05D008356 2.2e-213 745.7 482 81.3
Aa31LG2G8050 Aethionema arabicum HOM05D006770 ORTHO05D008356 9.5e-201 703.7 492 75.8
THA.LOC104813750 Tarenaya hassleriana HOM05D006770 ORTHO05D008356 1.5e-177 626.7 490 69.0
QL02p014697 Quercus lobata HOM05D006770 ORTHO05D008356 1.9e-153 546.6 488 59.8
Atru.chr13.120 Acer truncatum HOM05D006770 ORTHO05D008356 6.9e-151 538.1 458 61.1
Duzib041G0267 Durio zibethinus HOM05D006770 ORTHO05D008356 1.1e-148 530.8 450 60.9
Ciclev10000935m.g Citrus clementina HOM05D006770 ORTHO05D008356 4.6e-147 525.4 484 57.9
Potri.005G252300 Populus trichocarpa HOM05D006770 ORTHO05D008356 1.3e-146 523.9 485 58.6
Prupe.5G010100 Prunus persica HOM05D006770 ORTHO05D008356 2.3e-146 523.1 458 59.4
CiPaw.07G136700 Carya illinoinensis HOM05D006770 ORTHO05D008356 3.0e-146 522.7 475 58.5
Thecc.08G061300 Theobroma cacao HOM05D006770 ORTHO05D008356 6.7e-146 521.5 510 57.5
Haze_22817 Corylus avellana HOM05D006770 ORTHO05D008356 1.5e-145 520.4 510 55.9
COL.COLO4_36416 Corchorus olitorius HOM05D006770 ORTHO05D008356 2.8e-144 516.2 522 54.8
TAR625G0814 Trochodendron aralioides HOM05D006770 ORTHO05D008356 1.1e-143 514.2 498 57.0
PSO675G2016 Papaver somniferum HOM05D006770 ORTHO05D008356 3.1e-143 512.7 479 58.2
RcHm_v2.0_Chr5g0066911 Rosa chinensis HOM05D006770 ORTHO05D008356 4.0e-143 512.3 443 59.6
FAN13G3072 Fragaria x ananassa HOM05D006770 ORTHO05D008356 1.5e-142 510.4 444 59.9
PSO541G3292 Papaver somniferum HOM05D006770 ORTHO05D008356 2.0e-142 510.0 480 57.7
TWI79G0343 Tripterygium wilfordii HOM05D006770 ORTHO05D008356 3.4e-142 509.2 500 56.4
CSS0047097 Camellia sinensis var. sinensis HOM05D006770 ORTHO05D008356 1.3e-141 507.3 488 56.1
FAN08G2065 Fragaria x ananassa HOM05D006770 ORTHO05D008356 2.2e-141 506.5 444 59.2
Manes.17G081600 Manihot esculenta HOM05D006770 ORTHO05D008356 2.2e-141 506.5 465 59.8
MD00G1136800 Malus domestica HOM05D006770 ORTHO05D008356 2.9e-141 506.1 455 58.9
Cfa014101 Carpinus fangiana HOM05D006770 ORTHO05D008356 8.4e-141 504.6 412 63.6
FAN18G3713 Fragaria x ananassa HOM05D006770 ORTHO05D008356 1.9e-140 503.4 443 58.9
Nn5g30983 Nelumbo nucifera HOM05D006770 ORTHO05D008356 2.5e-140 503.1 484 56.4
FvH4_5g25440 Fragaria vesca HOM05D006770 ORTHO05D008356 3.2e-140 502.7 443 58.9
Gohir.A11G329900 Gossypium hirsutum HOM05D006770 ORTHO05D008356 4.2e-140 502.3 503 54.1
Medtr4g084940 Medicago truncatula HOM05D006770 ORTHO05D008356 4.2e-140 502.3 444 59.7
Sabra05G0195800 Salix brachista HOM05D006770 ORTHO05D008356 9.3e-140 501.1 485 56.3
EL10Ac1g01921 Beta vulgaris HOM05D006770 ORTHO05D008356 3.5e-139 499.2 495 54.3
Ca_25485_v3 Cicer arietinum L. HOM05D006770 ORTHO05D008356 6.0e-139 498.4 478 56.7
Gorai.006G274800 Gossypium raimondii HOM05D006770 ORTHO05D008356 3.0e-138 496.1 464 56.5
CANSAT64G1545 Cannabis sativa HOM05D006770 ORTHO05D008356 6.7e-138 495.0 457 56.5
Manes.05G095800 Manihot esculenta HOM05D006770 ORTHO05D008356 6.7e-138 495.0 504 56.0
Glyma.07G217000 Glycine max HOM05D006770 ORTHO05D008356 1.1e-137 494.2 476 55.9
AUR62040821 Chenopodium quinoa HOM05D006770 ORTHO05D008356 2.5e-137 493.0 479 54.9
Gorai.004G294200 Gossypium raimondii HOM05D006770 ORTHO05D008356 2.5e-137 493.0 464 56.0
Oeu032124.1 Olea europaea HOM05D006770 ORTHO05D008356 3.3e-137 492.7 458 58.1
Phvul.001G002700 Phaseolus vulgaris HOM05D006770 ORTHO05D008356 7.4e-137 491.5 427 59.0
Glyma.20G013900 Glycine max HOM05D006770 ORTHO05D008356 1.3e-136 490.7 476 55.3
PGR031G0937 Punica granatum HOM05D006770 ORTHO05D008356 1.6e-136 490.3 438 59.4
Aqoxy6G01625 Aquilegia oxysepala HOM05D006770 ORTHO05D008356 2.8e-136 489.6 451 56.3
TPR.G35412 Trifolium pratense HOM05D006770 ORTHO05D008356 8.2e-136 488.0 447 57.9
AUR62035131 Chenopodium quinoa HOM05D006770 ORTHO05D008356 1.8e-135 486.9 462 56.3
VMungo0251G0866 Vigna mungo HOM05D006770 ORTHO05D008356 4.1e-135 485.7 477 54.7
Sc02g0009170 Simmondsia chinensis HOM05D006770 ORTHO05D008356 4.5e-134 482.3 485 54.8
CAN.G79.22 Capsicum annuum HOM05D006770 ORTHO05D008356 5.9e-134 481.9 475 54.7
Lalb_Chr05g0219451 Lupinus albus HOM05D006770 ORTHO05D008356 1.0e-133 481.1 440 57.0
CsaV3_1G014370 Cucumis sativus L. HOM05D006770 ORTHO05D008356 2.9e-133 479.6 487 53.0
Lj4g0024175 Lotus japonicus HOM05D006770 ORTHO05D008356 2.9e-133 479.6 474 56.8
Rhsim13G0054100 Rhododendron simsii HOM05D006770 ORTHO05D008356 2.9e-133 479.6 510 52.7
Nitab4.5_0001583g0140 Nicotiana tabacum HOM05D006770 ORTHO05D008356 5.0e-133 478.8 487 54.8
Nitab4.5_0001225g0180 Nicotiana tabacum HOM05D006770 ORTHO05D008356 1.4e-132 477.2 475 55.4
CAN.G79.18 Capsicum annuum HOM05D006770 ORTHO05D008356 1.9e-132 476.9 444 56.8
CDE04G3028 Ceratophyllum demersum HOM05D006770 ORTHO05D008356 2.1e-131 473.4 457 55.8
Gohir.D08G007000 Gossypium hirsutum HOM05D006770 ORTHO05D008356 2.7e-131 473.0 437 57.2
Migut.M00215 Erythranthe guttata HOM05D006770 ORTHO05D008356 4.6e-131 472.2 455 56.5
PGSC0003DMG400021117 Solanum tuberosum HOM05D006770 ORTHO05D008356 4.6e-131 472.2 458 55.7
Psat7g128200 Pisum sativum HOM05D006770 ORTHO05D008356 6.1e-131 471.9 471 55.2
Sopen02g019170 Solanum pennellii HOM05D006770 ORTHO05D008356 6.1e-131 471.9 485 54.0
Solyc02g070010.1 Solanum lycopersicum HOM05D006770 ORTHO05D008356 3.0e-130 469.5 458 55.5
Gohir.A01G231900 Gossypium hirsutum HOM05D006770 ORTHO05D008356 8.8e-130 468.0 455 55.4
Sc02g0009150 Simmondsia chinensis HOM05D006770 ORTHO05D008356 8.8e-130 468.0 486 53.9
Cc09_g04530 Coffea canephora HOM05D006770 ORTHO05D008356 2.5e-129 466.5 466 52.8
MELO3C004826.2 Cucumis melo HOM05D006770 ORTHO05D008356 2.5e-129 466.5 493 52.5
Gorai.009G456100 Gossypium raimondii HOM05D006770 ORTHO05D008356 3.3e-129 466.1 464 54.7
Hund01783 Selenicereus undatus HOM05D006770 ORTHO05D008356 1.7e-128 463.8 461 53.4
Gohir.D08G275542 Gossypium hirsutum HOM05D006770 ORTHO05D008356 1.4e-127 460.7 413 57.1
Gohir.A13G000201 Gossypium hirsutum HOM05D006770 ORTHO05D008356 2.4e-127 459.9 413 56.9
DCAR_024417 Daucus carota HOM05D006770 ORTHO05D008356 7.7e-126 454.9 472 56.1
Atru.chr13.118 Acer truncatum HOM05D006770 ORTHO05D008356 2.9e-125 453.0 458 53.9
SalBow7G3490 Salvia bowleyana HOM05D006770 ORTHO05D008356 8.5e-125 451.4 467 52.7
ECA246G3919 Erigeron canadensis HOM05D006770 ORTHO05D008356 1.1e-124 451.1 492 50.6
Dinv31957 Davidia involucrata HOM05D006770 ORTHO05D008356 3.2e-124 449.5 351 63.5
Lsat_1_v5_gn_3_16821 Lactuca sativa HOM05D006770 ORTHO05D008356 3.2e-124 449.5 473 50.5
Ah.00g000990 Amaranthus hybridus HOM05D006770 ORTHO05D008356 5.5e-124 448.7 491 51.5
HanXRQChr06g0167391 Helianthus annuus HOM05D006770 ORTHO05D008356 1.6e-123 447.2 496 48.6
Peaxi162Scf00670g00024 Petunia axillaris HOM05D006770 ORTHO05D008356 1.1e-119 434.5 420 57.4
Actinidia23351 Actinidia chinensis HOM05D006770 ORTHO05D008356 1.8e-114 417.2 469 52.5
vmacro02830 Vaccinium macrocarpon HOM05D006770 ORTHO05D008356 3.9e-114 416.0 335 61.5
Gorai.007G379700 Gossypium raimondii HOM05D006770 ORTHO05D008356 6.7e-114 415.2 403 55.6
HPP92_007114 Vanilla planifolia HOM05D006770 ORTHO05D008356 8.2e-112 408.3 387 55.3
ATR0807G062 Amborella trichopoda HOM05D006770 ORTHO05D008356 1.4e-111 407.5 482 48.8
SGA_v2.0_scaffold538G52786 Striga asiatica HOM05D006770 ORTHO05D008356 5.9e-102 375.6 466 48.5
Zm00001eb391890 Zea mays HOM05D006770 ORTHO05D008356 2.9e-101 373.2 410 49.8
SGA_v2.0_scaffold476G52129 Striga asiatica HOM05D006770 ORTHO05D008356 4.2e-100 369.4 466 48.3
Lj9P204T39 Lonicera japonica HOM05D006770 ORTHO05D008356 9.4e-100 368.2 314 63.1
MD16G1284100 Malus domestica HOM05D006770 ORTHO05D008356 5.2e-98 362.5 396 52.0
Os02g0118000 Oryza sativa ssp. japonica HOM05D006770 ORTHO05D008356 5.9e-94 349.0 399 48.4
SEGI_37300 Sequoiadendron giganteum HOM05D006770 ORTHO05D008356 5.9e-94 349.0 375 47.7
Gohir.D11G349500 Gossypium hirsutum HOM05D006770 ORTHO05D008356 1.6e-75 287.7 221 60.6
Sed0018053 Sechium edule HOM05D006770 ORTHO05D008356 2.8e-75 287.0 358 49.7
SEGI_07142 Sequoiadendron giganteum HOM05D006770 ORTHO05D008356 7.1e-63 245.7 393 36.9
Gohir.A06G000350 Gossypium hirsutum HOM05D006770 ORTHO05D008356 3.5e-54 216.9 192 54.7
Actinidia12910 Actinidia chinensis HOM05D006770 ORTHO05D008356 1.7e-53 214.5 334 43.4
ClCG01G012950 Citrullus lanatus HOM05D006770 ORTHO05D008356 1.4e-39 168.3 196 50.0
AagrBONN_evm.TU.Sc2ySwM_117.3058 Anthoceros agrestis HOM05D006770 ORTHO05D008356 7.4e-36 156.0 311 33.4
CAN.G733.12 Capsicum annuum HOM05D006770 ORTHO05D008356 2.1e-35 154.5 209 43.5
Gohir.D02G000400 Gossypium hirsutum HOM05D006770 ORTHO05D008356 1.6e-19 101.7 140 46.4
CAN.G332.6 Capsicum annuum HOM05D006770 ORTHO05D008356 4.1e-18 97.1 107 48.6
VMungo0720G0800 Vigna mungo HOM05D006770 ORTHO05D008356 1.5e-17 95.1 132 45.5
Mapoly0166s0014 Marchantia polymorpha HOM05D006770 ORTHO05D008356 4.5e-17 93.6 236 33.9
CBR_g51330 Chara braunii HOM05D009772 ORTHO05D000353 1.1e-15 89.0 324 21.6
VMungo0331G1801 Vigna mungo HOM05D002295 ORTHO05D008356 3.2e-15 87.4 87 56.3
Pp3c13_18720 Physcomitrium patens HOM05D006770 ORTHO05D008356 5.1e-13 80.1 210 28.1
Pp3c13_18722 Physcomitrium patens HOM05D006770 ORTHO05D008356 5.1e-13 80.1 210 28.1
Ca_18849_v3 Cicer arietinum L. HOM05D000068 ORTHO05D000084 8.2e-11 72.8 167 26.3
HPP92_006127 Vanilla planifolia HOM05D002479 ORTHO05D002675 4.1e-10 70.5 117 31.6
vmacro02831 Vaccinium macrocarpon HOM05D006770 ORTHO05D008356 1.2e-09 68.9 147 40.1
AT5G25630 Arabidopsis thaliana HOM05D003689 ORTHO05D003950 1.9e-07 61.6 121 27.3
arahy.Tifrunner.gnm1.ann1.7VJC80 Arachis hypogaea HOM05D003177 ORTHO05D003481 2.5e-07 61.2 165 23.0
arahy.Tifrunner.gnm1.ann1.P62B18 Arachis hypogaea HOM05D003177 ORTHO05D003481 2.5e-07 61.2 165 23.0
arahy.Tifrunner.gnm1.ann1.Y3PJTZ Arachis hypogaea HOM05D003177 ORTHO05D003481 2.5e-07 61.2 165 23.0
arahy.Tifrunner.gnm1.ann1.W18Y25 Arachis hypogaea HOM05D003177 ORTHO05D003481 3.2e-07 60.8 165 23.0
Sp2g21900 Schrenkiella parvula HOM05D003689 ORTHO05D003950 7.2e-07 59.7 124 26.6
CARHR187690 Cardamine hirsuta HOM05D003689 ORTHO05D003950 9.4e-07 59.3 124 26.6
TAR381G0468 Trochodendron aralioides HOM05D006770 ORTHO05D008356 9.4e-07 59.3 96 40.6
Medtr1g008310 Medicago truncatula HOM05D003689 ORTHO05D003950 1.2e-06 58.9 117 24.8
Nitab4.5_0003410g0050 Nicotiana tabacum HOM05D000891 ORTHO05D000761 1.2e-06 58.9 261 23.4
Cpa.g.sc97.68 Carica papaya HOM05D003177 ORTHO05D003481 2.7e-06 57.8 145 24.1
Lsat_1_v5_gn_1_52140 Lactuca sativa HOM05D004824 ORTHO05D003903 2.7e-06 57.8 173 24.9
FvH4_1g00580 Fragaria vesca HOM05D006258 ORTHO05D007961 7.9e-06 56.2 119 27.7
FAN28G2306 Fragaria x ananassa HOM05D006258 ORTHO05D007961 7.9e-06 56.2 119 27.7


User provided reference genes

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