Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g13090 Schrenkiella parvula HOM05D005827 ORTHO05D005864 6.7e-79 297.4 157 100.0
A02p32240 Brassica napus HOM05D005827 ORTHO05D005864 3.9e-71 271.6 158 91.8
BraA02t08240Z Brassica rapa HOM05D005827 ORTHO05D005864 3.9e-71 271.6 158 91.8
BcaB07g30381 Brassica carinata HOM05D005827 ORTHO05D005864 1.5e-70 269.6 158 91.8
BcaC03g17064 Brassica carinata HOM05D005827 ORTHO05D005864 1.9e-70 269.2 158 90.5
C02p49840 Brassica napus HOM05D005827 ORTHO05D005864 3.3e-70 268.5 158 90.5
BolC2t11063H Brassica oleracea HOM05D005827 ORTHO05D005864 5.6e-70 267.7 158 89.9
Carub.0005s0059 Capsella rubella HOM05D005827 ORTHO05D005864 4.8e-69 264.6 157 86.6
Thhalv10005665m.g Eutrema salsugineum HOM05D005827 ORTHO05D005864 8.7e-63 243.8 178 76.4
AT2G01640 Arabidopsis thaliana HOM05D005827 ORTHO05D005864 1.5e-59 233.0 157 79.0
AL5G10740 Arabidopsis lyrata HOM05D005827 ORTHO05D005864 6.1e-56 221.1 157 77.1
THA.LOC104823732 Tarenaya hassleriana HOM05D005827 ORTHO05D005864 6.3e-53 211.1 153 71.9
Aa31LG2G8260 Aethionema arabicum HOM05D005827 ORTHO05D005864 3.8e-50 201.8 131 80.2
Duzib132G0170 Durio zibethinus HOM05D005827 ORTHO05D005864 8.2e-45 184.1 161 62.7
Manes.10G074300 Manihot esculenta HOM05D005827 ORTHO05D005864 1.4e-41 173.3 161 58.4
Thecc.02G106700 Theobroma cacao HOM05D005827 ORTHO05D005864 2.7e-40 169.1 144 61.8
Aa31sc215G30 Aethionema arabicum HOM05D005827 ORTHO05D005864 6.1e-40 167.9 118 75.4
Potri.009G097000 Populus trichocarpa HOM05D005827 ORTHO05D005864 6.1e-40 167.9 161 59.0
CiPaw.06G170100 Carya illinoinensis HOM05D005827 ORTHO05D005864 1.1e-38 163.7 151 60.3
Eucgr.G01363 Eucalyptus grandis HOM05D005827 ORTHO05D005864 2.6e-38 162.5 153 58.2
Nitab4.5_0011210g0030 Nicotiana tabacum HOM05D000771 ORTHO05D005864 2.2e-37 159.5 153 56.9
Prupe.1G568500 Prunus persica HOM05D005827 ORTHO05D005864 2.2e-37 159.5 161 55.3
Gohir.A03G186800 Gossypium hirsutum HOM05D005827 ORTHO05D005864 8.2e-37 157.5 133 60.2
Gorai.005G235500 Gossypium raimondii HOM05D005827 ORTHO05D005864 8.2e-37 157.5 133 60.2
Atru.chr5.2579 Acer truncatum HOM05D005827 ORTHO05D005864 1.4e-36 156.8 162 55.6
Nitab4.5_0000209g0220 Nicotiana tabacum HOM05D005827 ORTHO05D005864 1.8e-36 156.4 153 55.6
Cpa.g.sc246.10 Carica papaya HOM05D005827 ORTHO05D005864 3.1e-36 155.6 153 56.9
Peaxi162Scf00880g00322 Petunia axillaris HOM05D005827 ORTHO05D005864 3.1e-36 155.6 140 57.9
Rhsim11G0160600 Rhododendron simsii HOM05D005827 ORTHO05D005864 3.1e-36 155.6 153 56.2
Dinv15756 Davidia involucrata HOM05D005827 ORTHO05D005864 4.1e-36 155.2 151 59.6
Hma1.2p1_0796F.1_g219120 Hydrangea macrophylla HOM05D005827 ORTHO05D005864 5.3e-36 154.8 142 58.5
Nitab4.5_0001647g0080 Nicotiana tabacum HOM05D005827 ORTHO05D005864 9.1e-36 154.1 147 57.1
QL11p034047 Quercus lobata HOM05D005827 ORTHO05D005864 2.6e-35 152.5 151 55.6
Sopen12g028550 Solanum pennellii HOM05D005827 ORTHO05D005864 4.5e-35 151.8 153 54.9
Solyc12g056030.2 Solanum lycopersicum HOM05D005827 ORTHO05D005864 1.0e-34 150.6 153 54.9
Gohir.D02G207600 Gossypium hirsutum HOM05D005827 ORTHO05D005864 1.3e-34 150.2 133 59.4
CAN.G517.16 Capsicum annuum HOM05D005827 ORTHO05D005864 1.7e-34 149.8 149 55.0
PGSC0003DMG400005012 Solanum tuberosum HOM05D005827 ORTHO05D005864 3.8e-34 148.7 153 53.6
CANSAT11G0172 Cannabis sativa HOM05D005827 ORTHO05D005864 5.0e-34 148.3 132 59.8
Haze_10160 Corylus avellana HOM05D005827 ORTHO05D005864 5.0e-34 148.3 145 55.9
FAN04G0262 Fragaria x ananassa HOM05D005827 ORTHO05D005864 5.0e-34 148.3 146 56.2
MD15G1423200 Malus domestica HOM05D005827 ORTHO05D005864 5.0e-34 148.3 140 55.0
CSS0006486 Camellia sinensis var. sinensis HOM05D005827 ORTHO05D005864 6.5e-34 147.9 149 56.4
Cc02_g19170 Coffea canephora HOM05D005827 ORTHO05D005864 1.1e-33 147.1 138 59.4
PGR042G1992 Punica granatum HOM05D005827 ORTHO05D005864 1.5e-33 146.7 133 58.6
QL11p033993 Quercus lobata HOM05D005827 ORTHO05D005864 1.9e-33 146.4 143 55.2
Sabra09G0074500 Salix brachista HOM05D005827 ORTHO05D005864 3.2e-33 145.6 188 47.9
Sabra09G0074600 Salix brachista HOM05D005827 ORTHO05D005864 9.4e-33 144.1 161 54.0
RcHm_v2.0_Chr7g0222441 Rosa chinensis HOM05D005827 ORTHO05D005864 6.1e-32 141.4 131 55.0
FAN08G1793 Fragaria x ananassa HOM05D005827 ORTHO05D005864 1.0e-31 140.6 132 55.3
vmacro14445 Vaccinium macrocarpon HOM05D005827 ORTHO05D005864 1.8e-31 139.8 140 54.3
DCAR_029081 Daucus carota HOM05D005827 ORTHO05D005864 2.3e-31 139.4 161 49.7
TAR625G0497 Trochodendron aralioides HOM05D005827 ORTHO05D005864 2.3e-31 139.4 140 52.1
TAR625G1254 Trochodendron aralioides HOM05D005827 ORTHO05D005864 2.3e-31 139.4 140 52.1
FAN18G4374 Fragaria x ananassa HOM05D005827 ORTHO05D005864 4.0e-31 138.7 132 54.5
FvH4_5g29540 Fragaria vesca HOM05D005827 ORTHO05D005864 6.7e-31 137.9 132 55.3
FAN13G0291 Fragaria x ananassa HOM05D005827 ORTHO05D005864 1.2e-30 137.1 132 53.8
Sed0003004 Sechium edule HOM05D005827 ORTHO05D005864 2.6e-30 136.0 150 52.0
Nn1g04717 Nelumbo nucifera HOM05D005827 ORTHO05D005864 3.3e-30 135.6 132 54.5
MSTRG.27741 Avicennia marina HOM05D005827 ORTHO05D005864 5.7e-30 134.8 155 48.4
Lalb_Chr21g0308391 Lupinus albus HOM05D005827 ORTHO05D005864 5.7e-30 134.8 163 52.8
COL.COLO4_32605 Corchorus olitorius HOM05D005827 ORTHO05D005864 7.5e-30 134.4 157 51.0
MD08G1229200 Malus domestica HOM05D005827 ORTHO05D005864 1.1e-28 130.6 124 56.5
GSVIVG01003168001 Vitis vinifera HOM05D005827 ORTHO05D005864 1.1e-28 130.6 134 53.0
ClCG04G002790 Citrullus lanatus HOM05D005827 ORTHO05D005864 1.4e-28 130.2 142 52.1
PSO170G4182 Papaver somniferum HOM05D005827 ORTHO05D005864 1.8e-28 129.8 160 50.0
Ca_30413_v3 Cicer arietinum L. HOM05D005827 ORTHO05D005864 3.1e-28 129.0 166 53.6
Glyma.12G113700 Glycine max HOM05D005827 ORTHO05D005864 3.1e-28 129.0 150 52.7
Eucgr.H03226 Eucalyptus grandis HOM05D005827 ORTHO05D005864 4.1e-28 128.6 133 54.1
Phvul.007G038800 Phaseolus vulgaris HOM05D005827 ORTHO05D005864 4.1e-28 128.6 150 54.0
PSO210G1068 Papaver somniferum HOM05D005827 ORTHO05D005864 9.1e-28 127.5 160 50.0
CsaV3_4G029930 Cucumis sativus L. HOM05D005827 ORTHO05D005864 1.2e-27 127.1 139 50.4
Sc08g0001470 Simmondsia chinensis HOM05D005827 ORTHO05D005864 1.2e-27 127.1 136 53.7
Lj9A321T79 Lonicera japonica HOM05D005827 ORTHO05D005864 5.9e-27 124.8 192 42.2
SalBow3G3341 Salvia bowleyana HOM05D005827 ORTHO05D005864 5.9e-27 124.8 158 48.1
Aqoxy5G03364 Aquilegia oxysepala HOM05D005827 ORTHO05D005864 2.2e-26 122.9 157 49.0
EL10Ac9g22299 Beta vulgaris HOM05D005827 ORTHO05D005864 2.9e-26 122.5 154 46.8
AUR62010278 Chenopodium quinoa HOM05D005827 ORTHO05D005864 5.0e-26 121.7 136 50.0
Migut.N01172 Erythranthe guttata HOM05D005827 ORTHO05D005864 1.1e-25 120.6 137 46.7
HPP92_026144 Vanilla planifolia HOM05D005827 ORTHO05D005864 1.1e-25 120.6 146 44.5
ECA234G2840 Erigeron canadensis HOM05D005827 ORTHO05D005864 1.5e-25 120.2 134 50.7
TWI31G0230 Tripterygium wilfordii HOM05D005827 ORTHO05D005864 2.5e-25 119.4 133 51.9
Ciclev10030223m.g Citrus clementina HOM05D005827 ORTHO05D005864 5.5e-25 118.2 115 57.4
CDE01G0172 Ceratophyllum demersum HOM05D005827 ORTHO05D005864 9.4e-25 117.5 142 47.9
HanXRQChr16g0514881 Helianthus annuus HOM05D005827 ORTHO05D005864 1.6e-24 116.7 145 49.7
Os12g0244500 Oryza sativa ssp. japonica HOM05D005827 ORTHO05D005864 1.6e-24 116.7 119 57.1
arahy.Tifrunner.gnm1.ann1.M92LVR Arachis hypogaea HOM05D005827 ORTHO05D005864 2.1e-24 116.3 145 48.3
TAR381G1673 Trochodendron aralioides HOM05D005827 ORTHO05D005864 3.6e-24 115.5 111 54.1
Ca_06388_v3 Cicer arietinum L. HOM05D005827 ORTHO05D005864 4.7e-24 115.2 137 51.1
Lsat_1_v5_gn_5_114720 Lactuca sativa HOM05D005827 ORTHO05D005864 1.8e-23 113.2 142 48.6
Zm00001eb133530 Zea mays HOM05D005827 ORTHO05D005864 5.2e-23 111.7 153 47.7
Glyma.20G127400 Glycine max HOM05D005827 ORTHO05D005864 8.8e-23 110.9 131 51.1
arahy.Tifrunner.gnm1.ann1.HL4A43 Arachis hypogaea HOM05D005827 ORTHO05D005864 1.3e-21 107.1 148 46.6
MELO3C003274.2 Cucumis melo HOM05D005827 ORTHO05D005864 2.2e-21 106.3 124 49.2
SGA_v2.0_scaffold42G16001 Striga asiatica HOM05D005827 ORTHO05D005864 3.7e-21 105.5 158 42.4
Psat6g219720 Pisum sativum HOM05D005827 ORTHO05D005864 3.1e-20 102.4 172 43.0
Hund00127 Selenicereus undatus HOM05D005827 ORTHO05D005864 7.0e-20 101.3 101 54.5
unitig_94.g28296 Utricularia gibba HOM05D005827 ORTHO05D005864 1.2e-19 100.5 159 39.6
unitig_94.g28309 Utricularia gibba HOM05D005827 ORTHO05D005864 1.2e-19 100.5 159 39.6
SGA_v2.0_scaffold393G50707 Striga asiatica HOM05D005827 ORTHO05D005864 1.6e-19 100.1 151 41.7
Actinidia00415 Actinidia chinensis HOM05D005827 ORTHO05D005864 2.7e-19 99.4 120 50.8
Hund00128 Selenicereus undatus HOM05D005827 ORTHO05D005864 4.5e-19 98.6 114 50.0
Lj5g0000760 Lotus japonicus HOM05D005827 ORTHO05D005864 1.7e-18 96.7 107 51.4
Lj3g0023632 Lotus japonicus HOM05D005827 ORTHO05D005864 2.9e-18 95.9 107 52.3
Nn2g12688 Nelumbo nucifera HOM05D005827 ORTHO05D005864 8.6e-18 94.4 84 60.7
TPR.G13876 Trifolium pratense HOM05D005827 ORTHO05D005864 4.2e-17 92.0 106 51.9
MD05G1087800 Malus domestica HOM05D005827 ORTHO05D005864 7.2e-17 91.3 118 47.5
Medtr1g107495 Medicago truncatula HOM05D005827 ORTHO05D005864 1.2e-16 90.5 94 55.3
ATR0827G109 Amborella trichopoda HOM05D005827 ORTHO05D005864 4.7e-16 88.6 132 40.2
AUR62039111 Chenopodium quinoa HOM05D005827 ORTHO05D005864 1.5e-14 83.6 76 57.9
AUR62044681 Chenopodium quinoa HOM05D005827 ORTHO05D005864 7.5e-14 81.3 78 55.1
MELO3C033554.2 Cucumis melo HOM05D005827 ORTHO05D005864 7.5e-14 81.3 92 47.8
CARHR144210 Cardamine hirsuta HOM05D005827 ORTHO05D005864 1.3e-13 80.5 52 82.7
ATR0691G195 Amborella trichopoda HOM05D005827 ORTHO05D005864 2.2e-13 79.7 81 46.9
CiPaw.07G088900 Carya illinoinensis HOM05D005827 ORTHO05D005864 1.8e-12 76.6 88 51.1
Zm00001eb207600 Zea mays HOM05D005827 ORTHO05D005864 7.0e-12 74.7 90 51.1
QL11p034007 Quercus lobata HOM05D005827 ORTHO05D005864 2.7e-11 72.8 89 42.7
Zm00001eb006370 Zea mays HOM05D005827 ORTHO05D005864 4.5e-11 72.0 90 50.0
Zm00001eb324360 Zea mays HOM05D005827 ORTHO05D005864 2.3e-10 69.7 104 45.2
SEGI_38856 Sequoiadendron giganteum HOM05D005827 ORTHO05D005864 3.8e-10 68.9 167 33.5
Zm00001eb350190 Zea mays HOM05D005827 ORTHO05D005864 5.0e-10 68.6 111 45.0
SMO364G0308 Selaginella moellendorffii HOM05D005827 ORTHO05D000003 2.5e-09 66.2 126 33.3
Zm00001eb259520 Zea mays HOM05D005827 ORTHO05D005864 2.5e-09 66.2 103 44.7
CANSAT25G3357 Cannabis sativa HOM05D005827 ORTHO05D005864 3.3e-09 65.9 52 53.8
Zm00001eb091410 Zea mays HOM05D005827 ORTHO05D005864 3.3e-09 65.9 107 43.0
ClCG01G025500 Citrullus lanatus HOM05D005827 ORTHO05D005864 5.6e-09 65.1 139 37.4
Pp3c21_2370 Physcomitrium patens HOM05D005827 ORTHO05D005864 5.6e-09 65.1 141 37.6
SMO364G0554 Selaginella moellendorffii HOM05D005827 ORTHO05D005864 5.6e-09 65.1 126 33.3
Zm00001eb324920 Zea mays HOM05D005827 ORTHO05D005864 7.3e-09 64.7 102 45.1
Mapoly0052s0016 Marchantia polymorpha HOM05D005827 ORTHO05D005864 2.1e-08 63.2 155 33.5
AagrBONN_evm.TU.Sc2ySwM_228.4380 Anthoceros agrestis HOM05D005827 ORTHO05D005864 3.0e-07 59.3 95 43.2
Cre06.g248800 Chlamydomonas reinhardtii HOM05D045397 ORTHO05D005864 3.4e-06 55.8 148 33.1


User provided reference genes

Program Settings