Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g12940 Schrenkiella parvula HOM05D005341 ORTHO05D006712 1.2e-166 589.7 283 100.0
Thhalv10000985m.g Eutrema salsugineum HOM05D005341 ORTHO05D006712 3.1e-159 565.1 283 95.1
Carub.0005s0045 Capsella rubella HOM05D005341 ORTHO05D006712 4.6e-155 551.2 280 93.2
A02p32060 Brassica napus HOM05D005341 ORTHO05D006712 1.3e-154 549.7 283 91.9
BraA02t08217Z Brassica rapa HOM05D005341 ORTHO05D006712 1.3e-154 549.7 283 91.9
AL5G10480 Arabidopsis lyrata HOM05D005341 ORTHO05D006712 5.1e-154 547.7 282 92.2
CARHR144010 Cardamine hirsuta HOM05D005341 ORTHO05D006712 5.1e-154 547.7 280 93.2
AT2G01490 Arabidopsis thaliana HOM05D005341 ORTHO05D006712 1.5e-153 546.2 281 91.5
BolC2t11038H Brassica oleracea HOM05D005341 ORTHO05D006712 1.5e-153 546.2 283 91.2
BcaC03g17044 Brassica carinata HOM05D005341 ORTHO05D006712 2.5e-153 545.4 283 91.5
C02p49590 Brassica napus HOM05D005341 ORTHO05D006712 2.5e-153 545.4 283 91.5
BcaB07g30394 Brassica carinata HOM05D005341 ORTHO05D006712 4.8e-152 541.2 283 90.8
Aa31LG2G8430 Aethionema arabicum HOM05D005341 ORTHO05D006712 1.2e-150 536.6 291 87.6
THA.LOC104823806 Tarenaya hassleriana HOM05D005341 ORTHO05D006712 2.1e-139 499.2 281 83.3
Prupe.1G326800 Prunus persica HOM05D005341 ORTHO05D006712 3.6e-131 471.9 282 77.3
MD16G1026600 Malus domestica HOM05D005341 ORTHO05D006712 4.6e-131 471.5 282 75.5
Nn4g24210 Nelumbo nucifera HOM05D005341 ORTHO05D006712 1.8e-130 469.5 281 76.2
C09p30150 Brassica napus HOM05D005341 ORTHO05D006712 3.0e-130 468.8 258 87.6
RcHm_v2.0_Chr4g0441521 Rosa chinensis HOM05D005341 ORTHO05D006712 3.9e-130 468.4 282 75.2
BolC9t55880H Brassica oleracea HOM05D005341 ORTHO05D006712 1.1e-129 466.8 257 87.2
QL01p001313 Quercus lobata HOM05D005341 ORTHO05D006712 2.8e-128 462.2 281 74.4
Ah.02g127780 Amaranthus hybridus HOM05D005341 ORTHO05D006712 1.1e-127 460.3 281 73.3
Cpa.g.sc65.157 Carica papaya HOM05D005341 ORTHO05D006712 1.1e-127 460.3 280 74.6
Manes.15G129000 Manihot esculenta HOM05D005341 ORTHO05D006712 1.8e-127 459.5 281 76.2
Sed0016642 Sechium edule HOM05D005341 ORTHO05D006712 4.1e-127 458.4 282 74.5
MD13G1023900 Malus domestica HOM05D005341 ORTHO05D006712 5.3e-127 458.0 282 74.8
arahy.Tifrunner.gnm1.ann1.LQU7YY Arachis hypogaea HOM05D005341 ORTHO05D006712 6.9e-127 457.6 282 74.1
Ciclev10016178m.g Citrus clementina HOM05D005341 ORTHO05D006712 6.9e-127 457.6 280 73.9
FAN07G0561 Fragaria x ananassa HOM05D005341 ORTHO05D006712 1.2e-126 456.8 282 73.0
Potri.006G222800 Populus trichocarpa HOM05D005341 ORTHO05D006712 1.2e-126 456.8 280 74.3
TPR.G38361 Trifolium pratense HOM05D005341 ORTHO05D006712 1.2e-126 456.8 278 75.2
Peaxi162Scf00159g01021 Petunia axillaris HOM05D005341 ORTHO05D006712 1.5e-126 456.4 281 73.3
Hund24969 Selenicereus undatus HOM05D005341 ORTHO05D006712 1.5e-126 456.4 281 72.2
Thecc.02G283300 Theobroma cacao HOM05D005341 ORTHO05D006712 1.5e-126 456.4 281 76.2
GSVIVG01011739001 Vitis vinifera HOM05D005341 ORTHO05D006712 4.5e-126 454.9 281 73.7
CiPaw.05G196000 Carya illinoinensis HOM05D005341 ORTHO05D006712 5.9e-126 454.5 281 73.7
Lj4g0007741 Lotus japonicus HOM05D005341 ORTHO05D006712 7.7e-126 454.1 278 73.7
TWI31G1197 Tripterygium wilfordii HOM05D005341 ORTHO05D006712 1.0e-125 453.8 281 75.1
FvH4_4g32640 Fragaria vesca HOM05D005341 ORTHO05D006712 1.3e-125 453.4 282 72.7
FAN12G2540 Fragaria x ananassa HOM05D005341 ORTHO05D006712 1.3e-125 453.4 282 72.7
CsaV3_5G013260 Cucumis sativus L. HOM05D005341 ORTHO05D006712 1.7e-125 453.0 280 73.6
Dinv14419 Davidia involucrata HOM05D005341 ORTHO05D006712 1.7e-125 453.0 281 73.7
FAN22G2374 Fragaria x ananassa HOM05D005341 ORTHO05D006712 2.9e-125 452.2 281 72.6
Eucgr.B00057 Eucalyptus grandis HOM05D005341 ORTHO05D006712 3.8e-125 451.8 281 72.2
PGR044G1964 Punica granatum HOM05D005341 ORTHO05D006712 3.8e-125 451.8 280 73.2
Atru.chr11.477 Acer truncatum HOM05D005341 ORTHO05D006712 5.0e-125 451.4 281 73.7
Duzib268G0076 Durio zibethinus HOM05D005341 ORTHO05D006712 1.1e-124 450.3 281 74.7
Lalb_Chr16g0385061 Lupinus albus HOM05D005341 ORTHO05D006712 1.1e-124 450.3 282 72.3
CSS0010642 Camellia sinensis var. sinensis HOM05D005341 ORTHO05D006712 1.4e-124 449.9 282 72.7
Actinidia36662 Actinidia chinensis HOM05D005341 ORTHO05D006712 1.9e-124 449.5 282 72.3
ClCG11G001200 Citrullus lanatus HOM05D005341 ORTHO05D006712 3.2e-124 448.7 283 73.5
COL.COLO4_13155 Corchorus olitorius HOM05D005341 ORTHO05D006712 5.5e-124 448.0 281 74.7
Glyma.20G017500 Glycine max HOM05D005341 ORTHO05D006712 9.4e-124 447.2 278 73.0
Lsat_1_v5_gn_4_13500 Lactuca sativa HOM05D005341 ORTHO05D006712 1.2e-123 446.8 282 72.3
Glyma.07G219300 Glycine max HOM05D005341 ORTHO05D006712 1.6e-123 446.4 278 73.0
Cc11_g08490 Coffea canephora HOM05D005341 ORTHO05D006712 4.7e-123 444.9 281 72.6
MELO3C026795.2 Cucumis melo HOM05D005341 ORTHO05D006712 4.7e-123 444.9 280 72.5
PSO478G3305 Papaver somniferum HOM05D005341 ORTHO05D006712 4.7e-123 444.9 281 72.2
Psat7g129280 Pisum sativum HOM05D005341 ORTHO05D006712 4.7e-123 444.9 278 72.7
HanXRQChr17g0567271 Helianthus annuus HOM05D005341 ORTHO05D006712 6.1e-123 444.5 282 72.7
DCAR_007306 Daucus carota HOM05D005341 ORTHO05D006712 2.3e-122 442.6 282 71.6
TAR622G0920 Trochodendron aralioides HOM05D005341 ORTHO05D006712 3.9e-122 441.8 275 73.1
VMungo0251G3738 Vigna mungo HOM05D005341 ORTHO05D006712 3.9e-122 441.8 276 72.8
MSTRG.2162 Avicennia marina HOM05D005341 ORTHO05D006712 6.7e-122 441.0 281 72.6
Medtr4g084560 Medicago truncatula HOM05D005341 ORTHO05D006712 2.6e-121 439.1 286 72.7
CAN.G1298.33 Capsicum annuum HOM05D005341 ORTHO05D006712 3.3e-121 438.7 281 71.5
Sc04g0005370 Simmondsia chinensis HOM05D005341 ORTHO05D006712 3.3e-121 438.7 280 70.0
CDE05G0416 Ceratophyllum demersum HOM05D005341 ORTHO05D006712 4.4e-121 438.3 281 70.5
Gorai.002G178300 Gossypium raimondii HOM05D005341 ORTHO05D006712 4.4e-121 438.3 281 72.6
Gohir.D01G144400 Gossypium hirsutum HOM05D005341 ORTHO05D006712 5.7e-121 438.0 281 72.6
PSO017G2475 Papaver somniferum HOM05D005341 ORTHO05D006712 5.7e-121 438.0 281 72.2
Lj6A744T53 Lonicera japonica HOM05D005341 ORTHO05D006712 2.8e-120 435.6 286 71.0
unitig_27.g25178 Utricularia gibba HOM05D005341 ORTHO05D006712 4.8e-120 434.9 281 71.5
ATR0564G155 Amborella trichopoda HOM05D005341 ORTHO05D006712 8.2e-120 434.1 281 70.1
Duzib251G0346 Durio zibethinus HOM05D005341 ORTHO05D006712 8.2e-120 434.1 281 73.0
AUR62039516 Chenopodium quinoa HOM05D005341 ORTHO05D006712 1.1e-119 433.7 270 73.7
Sopen05g003820 Solanum pennellii HOM05D005341 ORTHO05D006712 1.1e-119 433.7 279 71.0
Solyc05g007970.4 Solanum lycopersicum HOM05D005341 ORTHO05D006712 1.4e-119 433.3 279 70.6
PGSC0003DMG400018423 Solanum tuberosum HOM05D005341 ORTHO05D006712 3.1e-119 432.2 279 70.3
Gohir.A01G151200 Gossypium hirsutum HOM05D005341 ORTHO05D006712 1.5e-118 429.9 281 71.5
HPP92_005883 Vanilla planifolia HOM05D005341 ORTHO05D006712 5.9e-118 427.9 282 70.6
BcaC04g21581 Brassica carinata HOM05D005341 ORTHO05D006712 7.7e-118 427.6 248 84.3
EL10Ac3g06547 Beta vulgaris HOM05D005341 ORTHO05D006712 1.3e-117 426.8 268 72.4
Aqoxy3G00085 Aquilegia oxysepala HOM05D005341 ORTHO05D006712 1.9e-116 422.9 311 64.6
Nitab4.5_0000688g0150 Nicotiana tabacum HOM05D005341 ORTHO05D006712 1.6e-115 419.9 274 71.2
Sabra06G0172200 Salix brachista HOM05D005341 ORTHO05D006712 1.6e-115 419.9 312 65.4
SEGI_27003 Sequoiadendron giganteum HOM05D005341 ORTHO05D006712 3.6e-115 418.7 279 67.7
Ca_18745_v3 Cicer arietinum L. HOM05D005341 ORTHO05D006712 4.7e-115 418.3 276 71.4
Oeu062657.1 Olea europaea HOM05D005341 ORTHO05D006712 1.0e-114 417.2 270 73.0
SHI36659 Sapria himalayana HOM05D005341 ORTHO05D006712 5.2e-114 414.8 269 70.6
Phvul.002G095700 Phaseolus vulgaris HOM05D005341 ORTHO05D006712 1.5e-113 413.3 248 74.6
AUR62014184 Chenopodium quinoa HOM05D005341 ORTHO05D006712 1.3e-112 410.2 250 74.8
Migut.E00437 Erythranthe guttata HOM05D005341 ORTHO05D006712 8.2e-112 407.5 281 68.3
ECA234G4311 Erigeron canadensis HOM05D005341 ORTHO05D006712 1.1e-111 407.1 282 68.1
SalBow8G3124 Salvia bowleyana HOM05D005341 ORTHO05D006712 3.5e-110 402.1 281 66.9
SalBow8G3488 Salvia bowleyana HOM05D005341 ORTHO05D006712 3.5e-110 402.1 281 66.9
Os03g0708100 Oryza sativa ssp. japonica HOM05D005341 ORTHO05D006712 5.0e-109 398.3 276 64.9
Ca_29576_v3 Cicer arietinum L. HOM05D005341 ORTHO05D006712 1.5e-108 396.7 263 71.5
Rhsim09G0096600 Rhododendron simsii HOM05D005341 ORTHO05D006712 2.5e-108 396.0 296 63.2
CANSAT25G0384 Cannabis sativa HOM05D005341 ORTHO05D006712 3.2e-108 395.6 240 77.1
Os05g0473900 Oryza sativa ssp. japonica HOM05D005341 ORTHO05D006712 4.7e-107 391.7 276 63.8
SMO358G0398 Selaginella moellendorffii HOM05D005341 ORTHO05D006712 1.4e-106 390.2 263 66.2
Zm00001eb054520 Zea mays HOM05D005341 ORTHO05D006712 7.0e-103 377.9 263 65.8
SGA_v2.0_scaffold39G15193 Striga asiatica HOM05D005341 ORTHO05D006712 7.7e-102 374.4 236 74.2
Mapoly0012s0126 Marchantia polymorpha HOM05D005341 ORTHO05D006712 2.2e-96 356.3 279 59.9
Pp3c7_14500 Physcomitrium patens HOM05D005341 ORTHO05D006712 2.9e-93 345.9 282 57.8
Cre16.g673281 Chlamydomonas reinhardtii HOM05D005341 ORTHO05D006712 1.1e-92 344.0 280 57.9
vmacro10652 Vaccinium macrocarpon HOM05D005341 ORTHO05D006712 1.4e-90 337.0 421 44.4
MBI12_g12675_MAGBIO Magnolia biondii HOM05D005341 ORTHO05D006712 1.3e-88 330.5 190 76.8
Zm00001eb216580 Zea mays HOM05D005341 ORTHO05D006712 2.7e-86 322.8 266 57.9
vmacro10649 Vaccinium macrocarpon HOM05D005341 ORTHO05D006712 2.5e-84 316.2 416 42.8
CBR_g31524 Chara braunii HOM05D005341 ORTHO05D006712 1.3e-80 303.9 265 57.4
A09p23410 Brassica napus HOM05D005341 ORTHO05D006712 2.3e-77 293.1 249 64.7
Zm00001eb409650 Zea mays HOM05D005341 ORTHO05D006712 2.1e-75 286.6 167 73.1
MCO03G480 Micromonas commoda HOM05D005341 ORTHO05D006712 1.1e-74 284.3 280 48.2
Zm00001eb142690 Zea mays HOM05D005341 ORTHO05D006712 1.4e-74 283.9 167 72.5
Zm00001eb341930 Zea mays HOM05D005341 ORTHO05D006712 3.4e-73 279.3 168 71.4
AagrBONN_evm.TU.Sc2ySwM_228.566 Anthoceros agrestis HOM05D005341 ORTHO05D006712 7.5e-73 278.1 179 67.6
BraA09t37941Z Brassica rapa HOM05D005341 ORTHO05D006712 1.6e-70 270.4 248 62.1
unitig_29.g31871 Utricularia gibba HOM05D005341 ORTHO05D006712 1.9e-68 263.5 306 45.8
Oeu018602.1 Olea europaea HOM05D005341 ORTHO05D006712 4.3e-68 262.3 144 77.8
PRCOL_00000921 Prasinoderma coloniale HOM05D005341 ORTHO05D006712 2.3e-66 256.5 295 46.1
Zm00001eb184170 Zea mays HOM05D005341 ORTHO05D006712 1.3e-61 240.7 159 67.9
Cfa022618 Carpinus fangiana HOM05D005341 ORTHO05D006712 6.6e-61 238.4 295 43.4
FAN17G2406 Fragaria x ananassa HOM05D005341 ORTHO05D006712 4.6e-54 215.7 135 74.8
AagrBONN_evm.TU.Sc2ySwM_117.3795 Anthoceros agrestis HOM05D005341 ORTHO05D006712 6.6e-53 211.8 146 60.3
Haze_10984 Corylus avellana HOM05D005341 ORTHO05D006712 1.9e-52 210.3 142 69.0
Haze_10982 Corylus avellana HOM05D005341 ORTHO05D006712 9.6e-44 181.4 158 57.0
BcaB07g30743 Brassica carinata HOM05D005341 ORTHO05D006712 2.1e-43 180.3 113 77.0
Haze_27483 Corylus avellana HOM05D005341 ORTHO05D006712 3.4e-41 172.9 225 40.0
CAN.G651.12 Capsicum annuum HOM05D005428 ORTHO05D006876 3.3e-28 129.8 77 72.7
RcHm_v2.0_Chr6g0283021 Rosa chinensis HOM05D006769 ORTHO05D008522 3.7e-27 126.3 71 73.2
Zm00001eb025440 Zea mays HOM05D005341 ORTHO05D006712 1.1e-26 124.8 72 69.4
Zm00001eb049700 Zea mays HOM05D005341 ORTHO05D006712 1.1e-26 124.8 72 69.4
FAN18G3043 Fragaria x ananassa HOM05D005341 ORTHO05D006712 1.7e-24 117.5 75 74.7
FAN24G2017 Fragaria x ananassa HOM05D005341 ORTHO05D006712 1.7e-24 117.5 76 73.7
FvH4_3g28840 Fragaria vesca HOM05D005341 ORTHO05D006712 6.5e-24 115.5 80 67.5
FAN01G1793 Fragaria x ananassa HOM05D000061 ORTHO05D003487 6.5e-24 115.5 92 62.0
MBI12_g12674_MAGBIO Magnolia biondii HOM05D005341 ORTHO05D006712 3.3e-20 103.2 80 61.2
Actinidia14980 Actinidia chinensis HOM05D005341 ORTHO05D006712 8.8e-13 78.6 52 65.4
CDE11G1102 Ceratophyllum demersum HOM05D005341 ORTHO05D006712 8.8e-13 78.6 85 50.6
GSVIVG01029848001 Vitis vinifera HOM05D000172 ORTHO05D000273 2.8e-11 73.6 55 67.3
FAN21G0384 Fragaria x ananassa HOM05D005341 ORTHO05D006712 5.3e-10 69.3 98 44.9
CBR_g37149 Chara braunii HOM05D005341 ORTHO05D017343 6.9e-10 68.9 169 29.6
unitig_699.g19475 Utricularia gibba HOM05D005341 ORTHO05D416497 6.1e-06 55.8 50 58.0


User provided reference genes

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