Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g12580 Schrenkiella parvula HOM05D004794 ORTHO05D005875 1.5e-192 676.0 350 100.0
BcaB07g30424 Brassica carinata HOM05D004794 ORTHO05D005875 1.9e-174 615.9 350 90.9
BcaC03g16998 Brassica carinata HOM05D004794 ORTHO05D005875 2.1e-173 612.5 351 90.9
Carub.0005s0009 Capsella rubella HOM05D004794 ORTHO05D005875 7.9e-173 610.5 350 90.3
C07p31580 Brassica napus HOM05D004794 ORTHO05D005875 2.3e-172 609.0 352 89.2
BcaC06g34216 Brassica carinata HOM05D004794 ORTHO05D005875 3.9e-172 608.2 350 89.7
C02p49070 Brassica napus HOM05D004794 ORTHO05D005875 3.9e-172 608.2 350 90.3
BolC7t43697H Brassica oleracea HOM05D004794 ORTHO05D005875 5.1e-172 607.8 352 89.2
BolC2t10997H Brassica oleracea HOM05D004794 ORTHO05D005875 6.7e-172 607.4 353 90.1
A02p31690 Brassica napus HOM05D004794 ORTHO05D005875 1.1e-171 606.7 351 90.0
BraA02t08175Z Brassica rapa HOM05D004794 ORTHO05D005875 1.9e-171 605.9 351 90.0
BcaC06g31333 Brassica carinata HOM05D004794 ORTHO05D005875 3.3e-171 605.1 352 90.3
BraA06t27340Z Brassica rapa HOM05D004794 ORTHO05D005875 1.7e-170 602.8 350 89.1
A06p44670 Brassica napus HOM05D004794 ORTHO05D005875 2.8e-170 602.1 348 89.7
AT2G01110 Arabidopsis thaliana HOM05D004794 ORTHO05D005875 4.4e-163 578.2 352 88.4
AL5G10060 Arabidopsis lyrata HOM05D004794 ORTHO05D005875 1.3e-162 576.6 352 88.6
Thhalv10000946m.g Eutrema salsugineum HOM05D004794 ORTHO05D005875 2.2e-162 575.9 350 88.0
CARHR143660 Cardamine hirsuta HOM05D004794 ORTHO05D005875 6.1e-157 557.8 350 84.3
Aa31sc79G60 Aethionema arabicum HOM05D004794 ORTHO05D005875 2.0e-152 542.7 326 87.4
THA.LOC104805049 Tarenaya hassleriana HOM05D004794 ORTHO05D005875 3.7e-146 521.9 367 77.7
Ciclev10015744m.g Citrus clementina HOM05D004794 ORTHO05D005875 9.8e-131 470.7 362 73.2
Gorai.008G158400 Gossypium raimondii HOM05D004794 ORTHO05D005875 9.2e-129 464.2 361 73.4
Gohir.A12G142300 Gossypium hirsutum HOM05D004794 ORTHO05D005875 1.2e-128 463.8 361 73.4
Gohir.D12G147200 Gossypium hirsutum HOM05D004794 ORTHO05D005875 2.0e-128 463.0 361 73.1
Nn4g24023 Nelumbo nucifera HOM05D004794 ORTHO05D005875 3.5e-128 462.2 364 71.4
Thecc.02G215600 Theobroma cacao HOM05D004794 ORTHO05D005875 1.7e-127 459.9 363 71.6
Manes.14G109500 Manihot esculenta HOM05D004794 ORTHO05D005875 2.5e-126 456.1 293 82.3
CiPaw.05G245300 Carya illinoinensis HOM05D004794 ORTHO05D005875 1.6e-125 453.4 362 69.9
Actinidia31991 Actinidia chinensis HOM05D004794 ORTHO05D005875 6.1e-125 451.4 280 85.0
PGR102G0643 Punica granatum HOM05D004794 ORTHO05D005875 8.0e-125 451.1 361 69.5
Cfa015814 Carpinus fangiana HOM05D004794 ORTHO05D005875 1.4e-124 450.3 366 69.7
Manes.06G063100 Manihot esculenta HOM05D004794 ORTHO05D005875 1.4e-124 450.3 363 68.9
QL01p003046 Quercus lobata HOM05D004794 ORTHO05D005875 3.0e-124 449.1 313 78.6
RcHm_v2.0_Chr4g0434021 Rosa chinensis HOM05D004794 ORTHO05D005875 3.0e-124 449.1 351 70.4
Eucgr.B02866 Eucalyptus grandis HOM05D004794 ORTHO05D005875 6.8e-124 448.0 299 80.6
TWI75G0950 Tripterygium wilfordii HOM05D004794 ORTHO05D005875 1.5e-123 446.8 283 83.7
TWI79G0577 Tripterygium wilfordii HOM05D004794 ORTHO05D005875 1.5e-123 446.8 359 70.8
GSVIVG01011805001 Vitis vinifera HOM05D004794 ORTHO05D005875 2.6e-123 446.0 320 74.4
Atru.chr11.334 Acer truncatum HOM05D004794 ORTHO05D005875 3.4e-123 445.7 368 70.1
FAN07G1519 Fragaria x ananassa HOM05D004794 ORTHO05D005875 3.4e-123 445.7 274 84.7
FAN22G0499 Fragaria x ananassa HOM05D004794 ORTHO05D005875 4.4e-123 445.3 350 70.9
Hund25018 Selenicereus undatus HOM05D004794 ORTHO05D005875 4.4e-123 445.3 268 86.9
Atru.chr11.341 Acer truncatum HOM05D004794 ORTHO05D005875 5.8e-123 444.9 368 70.9
Sc04g0005890 Simmondsia chinensis HOM05D004794 ORTHO05D005875 5.8e-123 444.9 278 83.8
Ah.03g138420 Amaranthus hybridus HOM05D004794 ORTHO05D005875 7.5e-123 444.5 276 84.4
Prupe.1G320000 Prunus persica HOM05D004794 ORTHO05D005875 7.5e-123 444.5 273 82.4
Dinv04904 Davidia involucrata HOM05D004794 ORTHO05D005875 1.7e-122 443.4 280 82.1
TAR374G0638 Trochodendron aralioides HOM05D004794 ORTHO05D005875 1.7e-122 443.4 280 82.5
Dinv16165 Davidia involucrata HOM05D004794 ORTHO05D005875 2.9e-122 442.6 356 69.4
Lj3A877T98 Lonicera japonica HOM05D004794 ORTHO05D005875 2.9e-122 442.6 279 82.8
ATR0691G049 Amborella trichopoda HOM05D004794 ORTHO05D005875 3.7e-122 442.2 288 80.9
FvH4_4g26390 Fragaria vesca HOM05D004794 ORTHO05D005875 3.7e-122 442.2 274 83.9
FAN12G0017 Fragaria x ananassa HOM05D004794 ORTHO05D005875 3.7e-122 442.2 274 83.9
FAN12G0914 Fragaria x ananassa HOM05D004794 ORTHO05D005875 3.7e-122 442.2 274 83.9
MD13G1032500 Malus domestica HOM05D004794 ORTHO05D005875 4.9e-122 441.8 274 83.2
AUR62002773 Chenopodium quinoa HOM05D004794 ORTHO05D005875 8.3e-122 441.0 287 82.2
vmacro01423 Vaccinium macrocarpon HOM05D004794 ORTHO05D005875 8.3e-122 441.0 364 68.4
FAN17G0450 Fragaria x ananassa HOM05D004794 ORTHO05D005875 1.1e-121 440.7 350 70.0
Phvul.007G034300 Phaseolus vulgaris HOM05D004794 ORTHO05D005875 1.1e-121 440.7 294 78.2
MD16G1034600 Malus domestica HOM05D004794 ORTHO05D005875 1.4e-121 440.3 275 82.9
EL10Ac6g14275 Beta vulgaris HOM05D004794 ORTHO05D005875 2.4e-121 439.5 273 84.2
ECA246G3704 Erigeron canadensis HOM05D004794 ORTHO05D005875 2.4e-121 439.5 279 82.1
Medtr1g109080 Medicago truncatula HOM05D004794 ORTHO05D005875 2.4e-121 439.5 316 72.8
Glyma.10G268000 Glycine max HOM05D004794 ORTHO05D005875 4.1e-121 438.7 297 78.1
arahy.Tifrunner.gnm1.ann1.B80FEM Arachis hypogaea HOM05D004794 ORTHO05D005875 5.4e-121 438.3 292 79.1
HanXRQChr15g0477711 Helianthus annuus HOM05D004794 ORTHO05D005875 9.2e-121 437.6 356 68.5
TAR622G1294 Trochodendron aralioides HOM05D004794 ORTHO05D005875 9.2e-121 437.6 280 81.8
CANSAT01G0565 Cannabis sativa HOM05D004794 ORTHO05D005875 1.2e-120 437.2 315 73.7
Psat6g222720 Pisum sativum HOM05D004794 ORTHO05D005875 1.2e-120 437.2 322 71.4
Aqoxy5G03876 Aquilegia oxysepala HOM05D004794 ORTHO05D005875 2.0e-120 436.4 364 68.1
Glyma.20G123100 Glycine max HOM05D004794 ORTHO05D005875 2.0e-120 436.4 297 78.1
HPP92_027135 Vanilla planifolia HOM05D004794 ORTHO05D005875 2.0e-120 436.4 299 76.9
Potri.010G117200 Populus trichocarpa HOM05D004794 ORTHO05D005875 2.7e-120 436.0 275 81.5
arahy.Tifrunner.gnm1.ann1.9SFQ4R Arachis hypogaea HOM05D004794 ORTHO05D005875 4.6e-120 435.3 289 78.5
Hma1.2p1_0114F.1_g055470 Hydrangea macrophylla HOM05D004794 ORTHO05D005875 6.0e-120 434.9 274 82.1
Sabra10G0086800 Salix brachista HOM05D004794 ORTHO05D005875 6.0e-120 434.9 258 86.0
Sabra10G0088400 Salix brachista HOM05D004794 ORTHO05D005875 6.0e-120 434.9 258 86.0
Zm00001eb009240 Zea mays HOM05D004794 ORTHO05D005875 6.0e-120 434.9 290 79.0
CDE06G2233 Ceratophyllum demersum HOM05D004794 ORTHO05D005875 1.3e-119 433.7 276 81.5
Nitab4.5_0013146g0030 Nicotiana tabacum HOM05D004794 ORTHO05D005875 1.3e-119 433.7 283 80.9
PSO170G3473 Papaver somniferum HOM05D004794 ORTHO05D005875 1.3e-119 433.7 275 82.5
PSO445G0020 Papaver somniferum HOM05D004794 ORTHO05D005875 1.3e-119 433.7 275 82.5
HanXRQChr01g0013251 Helianthus annuus HOM05D004794 ORTHO05D005875 1.7e-119 433.3 277 81.2
Sopen05g004370 Solanum pennellii HOM05D004794 ORTHO05D005875 1.7e-119 433.3 353 68.6
SGA_v2.0_scaffold376G50295 Striga asiatica HOM05D004794 ORTHO05D005875 2.3e-119 433.0 280 80.7
Solyc05g008530.3 Solanum lycopersicum HOM05D004794 ORTHO05D005875 5.0e-119 431.8 353 68.3
HPP92_021566 Vanilla planifolia HOM05D004794 ORTHO05D005875 5.0e-119 431.8 299 76.3
Ca_23704_v3 Cicer arietinum L. HOM05D004794 ORTHO05D005875 8.6e-119 431.0 360 65.3
Ca_30211_v3 Cicer arietinum L. HOM05D004794 ORTHO05D005875 8.6e-119 431.0 360 65.3
MELO3C012288.2 Cucumis melo HOM05D004794 ORTHO05D005875 1.9e-118 429.9 290 79.0
Lalb_Chr02g0145631 Lupinus albus HOM05D004794 ORTHO05D005875 1.9e-118 429.9 280 79.3
Nitab4.5_0000350g0140 Nicotiana tabacum HOM05D004794 ORTHO05D005875 1.9e-118 429.9 279 81.4
CsaV3_5G034760 Cucumis sativus L. HOM05D004794 ORTHO05D005875 2.5e-118 429.5 290 78.6
DCAR_007276 Daucus carota HOM05D004794 ORTHO05D005875 2.5e-118 429.5 253 85.8
PGSC0003DMG400030563 Solanum tuberosum HOM05D004794 ORTHO05D005875 2.5e-118 429.5 279 81.0
Sed0004857 Sechium edule HOM05D004794 ORTHO05D005875 3.3e-118 429.1 291 77.7
ClCG05G022340 Citrullus lanatus HOM05D004794 ORTHO05D005875 5.6e-118 428.3 290 78.3
CSS0006530 Camellia sinensis var. sinensis HOM05D004794 ORTHO05D005875 7.3e-118 427.9 361 69.5
Peaxi162Scf00205g01022 Petunia axillaris HOM05D004794 ORTHO05D005875 7.3e-118 427.9 280 80.4
CAN.G1489.14 Capsicum annuum HOM05D004794 ORTHO05D005875 1.2e-117 427.2 278 80.6
Os01g0501700 Oryza sativa ssp. japonica HOM05D004794 ORTHO05D005875 1.2e-117 427.2 286 80.1
Lalb_Chr06g0165741 Lupinus albus HOM05D004794 ORTHO05D005875 2.1e-117 426.4 279 78.5
CDE07G0253 Ceratophyllum demersum HOM05D004794 ORTHO05D005875 2.8e-117 426.0 256 84.8
Cc11_g09270 Coffea canephora HOM05D004794 ORTHO05D005875 6.2e-117 424.9 368 66.6
Lsat_1_v5_gn_3_54000 Lactuca sativa HOM05D004794 ORTHO05D005875 8.0e-117 424.5 267 82.0
Migut.E00392 Erythranthe guttata HOM05D004794 ORTHO05D005875 1.1e-116 424.1 295 75.9
EL10Ac4g08742 Beta vulgaris HOM05D004794 ORTHO05D005875 1.8e-116 423.3 286 78.0
Duzib251G0273 Durio zibethinus HOM05D004794 ORTHO05D005875 1.8e-116 423.3 361 67.6
Lj5g0022431 Lotus japonicus HOM05D004794 ORTHO05D005875 1.8e-116 423.3 282 77.3
MSTRG.13564 Avicennia marina HOM05D004794 ORTHO05D005875 3.1e-116 422.5 286 77.3
COL.COLO4_20120 Corchorus olitorius HOM05D004794 ORTHO05D005875 4.0e-116 422.2 264 84.1
SEGI_17562 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 5.2e-116 421.8 275 80.7
Oeu029170.1 Olea europaea HOM05D004794 ORTHO05D005875 1.2e-115 420.6 291 74.6
SalBow8G5373 Salvia bowleyana HOM05D004794 ORTHO05D005875 1.2e-115 420.6 269 79.6
Oeu048392.1 Olea europaea HOM05D004794 ORTHO05D005875 2.0e-115 419.9 256 82.0
Haze_00684 Corylus avellana HOM05D004794 ORTHO05D005875 3.4e-115 419.1 364 66.5
Duzib268G0539 Durio zibethinus HOM05D004794 ORTHO05D005875 3.4e-115 419.1 354 68.4
MBI16_g29821_MAGBIO Magnolia biondii HOM05D004794 ORTHO05D005875 3.4e-115 419.1 288 77.1
Lj6A750T92 Lonicera japonica HOM05D004794 ORTHO05D005875 4.9e-114 415.2 253 83.8
Migut.L01019 Erythranthe guttata HOM05D004794 ORTHO05D005875 7.8e-112 407.9 281 76.2
HPP92_020138 Vanilla planifolia HOM05D004794 ORTHO05D005875 1.9e-110 403.3 296 74.7
Mapoly0010s0061 Marchantia polymorpha HOM05D004794 ORTHO05D005875 5.6e-110 401.7 353 63.7
AUR62037257 Chenopodium quinoa HOM05D004794 ORTHO05D005875 9.5e-110 401.0 363 63.9
Pp3c3_36440 Physcomitrium patens HOM05D004794 ORTHO05D005875 9.5e-110 401.0 266 77.8
Rhsim12G0088300 Rhododendron simsii HOM05D004794 ORTHO05D005875 2.1e-109 399.8 337 66.8
Lsat_1_v5_gn_4_15760 Lactuca sativa HOM05D004794 ORTHO05D005875 3.6e-109 399.1 273 77.3
Pp3c8_3800 Physcomitrium patens HOM05D004794 ORTHO05D005875 1.8e-108 396.7 266 78.2
SMO119G0095 Selaginella moellendorffii HOM05D004794 ORTHO05D005875 1.2e-107 394.0 251 79.3
AagrBONN_evm.TU.Sc2ySwM_368.2774 Anthoceros agrestis HOM05D004794 ORTHO05D005875 4.4e-107 392.1 274 74.8
DCAR_030186 Daucus carota HOM05D004794 ORTHO05D005875 4.4e-107 392.1 225 88.0
SalBow8G4147 Salvia bowleyana HOM05D004794 ORTHO05D005875 1.9e-105 386.7 324 66.7
ECA234G2688 Erigeron canadensis HOM05D004794 ORTHO05D005875 9.2e-105 384.4 277 72.6
CBR_g19219 Chara braunii HOM05D004794 ORTHO05D005875 2.7e-104 382.9 245 79.6
HanXRQChr17g0567091 Helianthus annuus HOM05D004794 ORTHO05D005875 3.3e-102 375.9 278 71.9
TPR.G4856 Trifolium pratense HOM05D004794 ORTHO05D005875 2.9e-98 362.8 270 69.3
PRCOL_00000588 Prasinoderma coloniale HOM05D004794 ORTHO05D005875 3.2e-97 359.4 276 66.3
Zm00001eb399680 Zea mays HOM05D004794 ORTHO05D005875 5.6e-94 348.6 296 66.2
MCO02G003 Micromonas commoda HOM05D004794 ORTHO05D005875 4.0e-92 342.4 251 70.1
Cre03.g145887 Chlamydomonas reinhardtii HOM05D004794 ORTHO05D005875 2.6e-91 339.7 294 61.6
Oeu022847.1 Olea europaea HOM05D004794 ORTHO05D005875 1.7e-87 327.0 214 80.4
BcaC03g16992 Brassica carinata HOM05D004794 ORTHO05D005875 5.3e-84 315.5 196 83.2
BolC2t10985H Brassica oleracea HOM05D004794 ORTHO05D005875 7.1e-81 305.1 196 80.6
VMungo0720G1627 Vigna mungo HOM05D004794 ORTHO05D005875 1.1e-76 291.2 297 58.6
A09p23220 Brassica napus HOM05D004794 ORTHO05D005875 1.8e-71 273.9 155 91.0
BraA09t37925Z Brassica rapa HOM05D004794 ORTHO05D005875 8.7e-71 271.6 165 86.7
unitig_8.g3987 Utricularia gibba HOM05D000722 ORTHO05D000590 8.7e-63 245.0 177 72.3
Cpa.g.sc65.92 Carica papaya HOM05D004794 ORTHO05D005875 1.0e-47 194.9 108 94.4
C09p29960 Brassica napus HOM05D004794 ORTHO05D039171 5.0e-42 176.0 216 52.8
SEGI_30482 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 4.8e-37 159.5 102 81.4
SEGI_31512 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 8.2e-37 158.7 99 82.8
SEGI_19547 Sequoiadendron giganteum HOM05D004794 ORTHO05D005875 5.0e-34 149.4 112 72.3
BcaC04g21603 Brassica carinata HOM05D004794 ORTHO05D039171 1.7e-29 134.4 238 44.5
BolC9t55859H Brassica oleracea HOM05D004794 ORTHO05D005875 2.0e-22 110.9 64 93.8
unitig_8.g3988 Utricularia gibba HOM05D004794 ORTHO05D005875 3.1e-20 103.6 61 86.9


User provided reference genes

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