Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g12290 Schrenkiella parvula HOM05D004898 ORTHO05D005574 1.4e-309 1065.4 540 100.0
BcaC04g21615 Brassica carinata HOM05D004898 ORTHO05D005574 3.6e-289 997.7 541 93.2
BolC9t55848H Brassica oleracea HOM05D004898 ORTHO05D005574 3.6e-289 997.7 541 93.2
CARHR173790 Cardamine hirsuta HOM05D004898 ORTHO05D005574 6.1e-289 996.9 540 93.1
BcaC06g31373 Brassica carinata HOM05D004898 ORTHO05D005574 7.9e-289 996.5 542 92.6
A06p44970 Brassica napus HOM05D004898 ORTHO05D005574 1.0e-288 996.1 542 92.6
C09p29850 Brassica napus HOM05D004898 ORTHO05D005574 1.8e-288 995.3 541 93.0
BolC7t43662H Brassica oleracea HOM05D004898 ORTHO05D005574 5.1e-288 993.8 542 92.3
AL8G10410 Arabidopsis lyrata HOM05D004898 ORTHO05D005574 1.1e-287 992.6 541 93.2
A09p23110 Brassica napus HOM05D004898 ORTHO05D005574 9.7e-287 989.6 541 92.6
C07p31210 Brassica napus HOM05D004898 ORTHO05D005574 6.3e-286 986.9 542 91.7
BraA09t37914Z Brassica rapa HOM05D004898 ORTHO05D005574 1.4e-285 985.7 541 92.2
AT5G47560 Arabidopsis thaliana HOM05D004898 ORTHO05D005574 1.8e-285 985.3 541 92.4
Carub.0008s0022 Capsella rubella HOM05D004898 ORTHO05D005574 4.1e-285 984.2 542 91.9
BraA06t27368Z Brassica rapa HOM05D004898 ORTHO05D005574 5.9e-284 980.3 537 92.0
Thhalv10000848m.g Eutrema salsugineum HOM05D004898 ORTHO05D005574 3.8e-283 977.6 533 93.2
BcaC03g16972 Brassica carinata HOM05D004898 ORTHO05D005574 8.5e-283 976.5 537 91.6
C02p48760 Brassica napus HOM05D004898 ORTHO05D005574 8.5e-283 976.5 537 91.6
BolC2t10970H Brassica oleracea HOM05D004898 ORTHO05D005574 8.5e-283 976.5 537 91.6
A02p31430 Brassica napus HOM05D004898 ORTHO05D005574 1.4e-282 975.7 537 91.4
BcaC06g34240 Brassica carinata HOM05D004898 ORTHO05D005574 3.0e-280 968.0 566 87.3
BraA02t08145Z Brassica rapa HOM05D004898 ORTHO05D005574 6.7e-280 966.8 537 91.1
Aa31LG9G5480 Aethionema arabicum HOM05D004898 ORTHO05D005574 2.3e-264 915.2 519 88.8
THA.LOC104806731 Tarenaya hassleriana HOM05D004898 ORTHO05D005574 7.3e-242 840.5 542 80.3
Dinv07411 Davidia involucrata HOM05D004898 ORTHO05D005574 5.8e-231 804.3 535 76.6
MD05G1358600 Malus domestica HOM05D004898 ORTHO05D005574 1.4e-229 799.7 525 77.0
Eucgr.E03924 Eucalyptus grandis HOM05D004898 ORTHO05D005574 1.2e-228 796.6 531 76.8
Potri.006G013900 Populus trichocarpa HOM05D004898 ORTHO05D005574 4.6e-228 794.7 542 75.6
FvH4_3g00891 Fragaria vesca HOM05D004898 ORTHO05D005574 1.7e-227 792.7 531 75.1
Ciclev10014770m.g Citrus clementina HOM05D004898 ORTHO05D005574 3.9e-227 791.6 537 75.6
Rhsim13G0144800 Rhododendron simsii HOM05D004898 ORTHO05D005574 5.0e-227 791.2 524 76.1
Atru.chr1.2413_Atru.chr1.2414 Acer truncatum HOM05D004898 ORTHO05D005574 3.3e-226 788.5 535 75.5
FAN21G2703 Fragaria x ananassa HOM05D004898 ORTHO05D005574 7.3e-226 787.3 531 74.8
Prupe.4G009500 Prunus persica HOM05D004898 ORTHO05D005574 7.3e-226 787.3 534 75.7
Manes.08G069675 Manihot esculenta HOM05D004898 ORTHO05D005574 9.5e-226 786.9 530 76.0
TWI38G1092 Tripterygium wilfordii HOM05D004898 ORTHO05D005574 2.8e-225 785.4 528 75.6
Sabra06G0009800 Salix brachista HOM05D004898 ORTHO05D005574 2.3e-224 782.3 540 74.1
Oeu052872.1 Olea europaea HOM05D004898 ORTHO05D005574 5.2e-224 781.2 535 74.8
RcHm_v2.0_Chr5g0001371 Rosa chinensis HOM05D004898 ORTHO05D005574 8.9e-224 780.4 526 74.9
CANSAT56G0760 Cannabis sativa HOM05D004898 ORTHO05D005574 2.6e-223 778.9 531 73.8
EL10Ac8g20211 Beta vulgaris HOM05D004898 ORTHO05D005574 3.4e-223 778.5 523 74.8
Hund23404 Selenicereus undatus HOM05D004898 ORTHO05D005574 3.4e-223 778.5 522 76.1
Actinidia39792 Actinidia chinensis HOM05D004898 ORTHO05D005574 6.4e-222 774.2 523 74.6
Lsat_1_v5_gn_7_13740 Lactuca sativa HOM05D004898 ORTHO05D005574 2.4e-221 772.3 518 74.5
AUR62012806 Chenopodium quinoa HOM05D004898 ORTHO05D005574 9.2e-221 770.4 519 74.4
Cfa000089 Carpinus fangiana HOM05D004898 ORTHO05D005574 1.6e-220 769.6 531 73.1
SGA_v2.0_scaffold7G03752 Striga asiatica HOM05D004898 ORTHO05D005574 2.7e-220 768.8 519 75.1
Cfa000090 Carpinus fangiana HOM05D004898 ORTHO05D005574 3.5e-220 768.5 530 73.0
QL05p069311 Quercus lobata HOM05D004898 ORTHO05D005574 5.1e-219 764.6 530 73.4
Haze_06951 Corylus avellana HOM05D004898 ORTHO05D005574 9.5e-218 760.4 533 72.4
Nn1g03284 Nelumbo nucifera HOM05D004898 ORTHO05D005574 1.6e-217 759.6 536 72.9
CAN.G1186.45 Capsicum annuum HOM05D004898 ORTHO05D005574 1.1e-216 756.9 541 71.3
CiPaw.09G103400 Carya illinoinensis HOM05D004898 ORTHO05D005574 2.6e-215 752.3 524 72.3
MBI19_g06154_MAGBIO Magnolia biondii HOM05D004898 ORTHO05D005574 2.6e-215 752.3 527 72.3
Sc05g0009650 Simmondsia chinensis HOM05D004898 ORTHO05D005574 4.4e-215 751.5 528 71.6
Solyc11g012360.2 Solanum lycopersicum HOM05D004898 ORTHO05D005574 1.7e-214 749.6 542 70.8
Thecc.06G234600 Theobroma cacao HOM05D004898 ORTHO05D005574 1.4e-213 746.5 538 71.4
GSVIVG01003326001 Vitis vinifera HOM05D004898 ORTHO05D005574 2.7e-212 742.3 461 80.9
Lj1A1241T64 Lonicera japonica HOM05D004898 ORTHO05D005574 7.8e-212 740.7 528 72.0
CSS0045138 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 1.7e-211 739.6 534 70.4
ClCG01G010280 Citrullus lanatus HOM05D004898 ORTHO05D005574 1.7e-211 739.6 537 70.0
MD10G1333000 Malus domestica HOM05D004898 ORTHO05D005574 3.9e-211 738.4 531 70.1
Cc09_g00800 Coffea canephora HOM05D004898 ORTHO05D005574 5.1e-211 738.0 461 81.3
Sed0020280 Sechium edule HOM05D004898 ORTHO05D005574 5.1e-211 738.0 538 69.5
PSO541G1832 Papaver somniferum HOM05D004898 ORTHO05D005574 3.3e-210 735.3 541 69.1
ECA240G2526 Erigeron canadensis HOM05D004898 ORTHO05D005574 7.3e-210 734.2 491 75.6
FvH4_3g00890 Fragaria vesca HOM05D004898 ORTHO05D005574 2.8e-209 732.3 527 70.2
RcHm_v2.0_Chr5g0001361 Rosa chinensis HOM05D004898 ORTHO05D005574 2.8e-209 732.3 527 70.0
Peaxi162Scf00352g00047 Petunia axillaris HOM05D004898 ORTHO05D005574 4.7e-209 731.5 510 72.7
MELO3C025563.2 Cucumis melo HOM05D004898 ORTHO05D005574 6.2e-209 731.1 536 68.8
CsaV3_1G017190 Cucumis sativus L. HOM05D004898 ORTHO05D005574 1.4e-208 729.9 536 69.0
Prupe.4G009400 Prunus persica HOM05D004898 ORTHO05D005574 5.2e-208 728.0 531 70.2
Duzib160G0749 Durio zibethinus HOM05D004898 ORTHO05D005574 9.0e-208 727.2 540 69.3
FAN21G0575 Fragaria x ananassa HOM05D004898 ORTHO05D005574 9.0e-208 727.2 527 69.8
HanXRQChr05g0129101 Helianthus annuus HOM05D004898 ORTHO05D005574 9.0e-208 727.2 495 74.1
Gohir.D10G008600 Gossypium hirsutum HOM05D004898 ORTHO05D005574 2.0e-207 726.1 532 69.2
FAN25G1838 Fragaria x ananassa HOM05D004898 ORTHO05D005574 4.4e-207 724.9 525 71.2
PSO675G0622 Papaver somniferum HOM05D004898 ORTHO05D005574 1.7e-206 723.0 510 71.0
HPP92_022800 Vanilla planifolia HOM05D004898 ORTHO05D005574 2.9e-206 722.2 525 69.9
PGR042G1052 Punica granatum HOM05D004898 ORTHO05D005574 4.9e-206 721.5 529 71.6
Gohir.A10G008900 Gossypium hirsutum HOM05D004898 ORTHO05D005574 8.4e-206 720.7 532 69.0
DCAR_030865 Daucus carota HOM05D004898 ORTHO05D005574 7.8e-204 714.1 519 69.9
PGSC0003DMG400013282 Solanum tuberosum HOM05D004898 ORTHO05D005574 3.0e-203 712.2 475 76.6
Sopen11g007110 Solanum pennellii HOM05D004898 ORTHO05D005574 8.7e-203 710.7 475 76.0
Gohir.D06G160500 Gossypium hirsutum HOM05D004898 ORTHO05D005574 1.9e-202 709.5 530 67.4
Nitab4.5_0000143g0160 Nicotiana tabacum HOM05D004898 ORTHO05D005574 3.3e-202 708.8 517 70.8
Gohir.A06G153700 Gossypium hirsutum HOM05D004898 ORTHO05D005574 5.6e-202 708.0 531 67.2
Gorai.010G187200 Gossypium raimondii HOM05D004898 ORTHO05D005574 3.4e-199 698.7 523 67.5
Gorai.011G009400 Gossypium raimondii HOM05D004898 ORTHO05D005574 2.2e-198 696.0 532 67.1
GSVIVG01006080001 Vitis vinifera HOM05D004898 ORTHO05D005574 6.4e-198 694.5 434 80.9
Glyma.09G010700 Glycine max HOM05D004898 ORTHO05D005574 9.3e-197 690.6 542 64.9
Lj4g0027564 Lotus japonicus HOM05D004898 ORTHO05D005574 6.7e-195 684.5 542 65.3
Medtr4g133230 Medicago truncatula HOM05D004898 ORTHO05D005574 2.1e-193 679.5 545 64.4
arahy.Tifrunner.gnm1.ann1.ZF0ICG Arachis hypogaea HOM05D004898 ORTHO05D005574 8.1e-193 677.6 528 65.3
VMungo0540G1349 Vigna mungo HOM05D004898 ORTHO05D005574 8.1e-193 677.6 536 64.4
arahy.Tifrunner.gnm1.ann1.GM6TB3 Arachis hypogaea HOM05D004898 ORTHO05D005574 1.1e-192 677.2 528 65.3
unitig_748.g7600 Utricularia gibba HOM05D004898 ORTHO05D005574 1.4e-192 676.8 459 73.0
Psat4g004680 Pisum sativum HOM05D004898 ORTHO05D005574 6.9e-192 674.5 548 64.4
Glyma.15G115200 Glycine max HOM05D004898 ORTHO05D005574 9.0e-192 674.1 539 63.8
Os09g0484900 Oryza sativa ssp. japonica HOM05D004898 ORTHO05D005574 2.6e-191 672.5 531 62.7
COL.COLO4_31899 Corchorus olitorius HOM05D004898 ORTHO05D005574 2.9e-190 669.1 532 66.0
Medtr2g026030 Medicago truncatula HOM05D004898 ORTHO05D005574 4.9e-190 668.3 535 63.6
arahy.Tifrunner.gnm1.ann1.L2E3EJ Arachis hypogaea HOM05D004898 ORTHO05D005574 6.4e-190 667.9 541 64.1
arahy.Tifrunner.gnm1.ann1.5M9JPT Arachis hypogaea HOM05D004898 ORTHO05D005574 4.2e-189 665.2 541 64.3
Lj6g0016962 Lotus japonicus HOM05D004898 ORTHO05D005574 4.2e-189 665.2 533 63.6
Lalb_Chr18g0057021 Lupinus albus HOM05D004898 ORTHO05D005574 9.3e-189 664.1 539 63.1
Psat1g175640 Pisum sativum HOM05D004898 ORTHO05D005574 4.6e-188 661.8 528 62.9
Actinidia34018 Actinidia chinensis HOM05D004898 ORTHO05D005574 8.7e-187 657.5 447 75.8
Phvul.006G142700 Phaseolus vulgaris HOM05D004898 ORTHO05D005574 1.3e-182 643.7 465 68.4
Os08g0503700 Oryza sativa ssp. japonica HOM05D004898 ORTHO05D005574 1.0e-179 634.0 540 58.9
SalBow8G1501 Salvia bowleyana HOM05D004898 ORTHO05D005574 5.1e-179 631.7 444 72.7
Zm00001eb158920 Zea mays HOM05D004898 ORTHO05D005574 8.7e-179 630.9 535 59.4
Zm00001eb316570 Zea mays HOM05D004898 ORTHO05D005574 2.5e-178 629.4 527 58.8
VMungo0540G0197 Vigna mungo HOM05D004898 ORTHO05D005574 4.6e-172 608.6 532 59.0
vmacro03635 Vaccinium macrocarpon HOM05D004898 ORTHO05D005574 1.3e-171 607.1 390 77.2
Aqoxy4G02191 Aquilegia oxysepala HOM05D004898 ORTHO05D005574 9.4e-165 584.3 391 74.7
TPR.G30453 Trifolium pratense HOM05D004898 ORTHO05D005574 2.0e-159 566.6 533 56.1
CSS0031856 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 2.5e-157 559.7 382 73.3
Ca_00729_v3 Cicer arietinum L. HOM05D004898 ORTHO05D005574 8.8e-155 551.2 465 60.2
TPR.G30452 Trifolium pratense HOM05D004898 ORTHO05D005574 8.5e-150 534.6 530 55.7
TPR.G5945 Trifolium pratense HOM05D004898 ORTHO05D005574 6.1e-148 528.5 394 67.8
Migut.M01405 Erythranthe guttata HOM05D004898 ORTHO05D005574 6.3e-145 518.5 314 79.9
Ca_21041_v3 Cicer arietinum L. HOM05D004898 ORTHO05D005574 1.8e-144 516.9 388 67.0
MD10G1332900 Malus domestica HOM05D004898 ORTHO05D005574 4.4e-138 495.7 358 68.7
AUR62021848 Chenopodium quinoa HOM05D004898 ORTHO05D005574 2.2e-137 493.4 348 70.4
SMO118G0209 Selaginella moellendorffii HOM05D004898 ORTHO05D005574 1.3e-129 467.6 468 49.8
SEGI_04913 Sequoiadendron giganteum HOM05D004898 ORTHO05D005574 1.8e-128 463.8 322 69.3
AagrBONN_evm.TU.Sc2ySwM_117.1091 Anthoceros agrestis HOM05D004898 ORTHO05D005574 7.8e-127 458.4 522 47.7
SMO270G0136 Selaginella moellendorffii HOM05D004898 ORTHO05D005574 1.2e-124 451.1 457 49.9
Pp3c15_15560 Physcomitrium patens HOM05D004898 ORTHO05D005574 2.7e-119 433.3 560 43.6
Mapoly0082s0008 Marchantia polymorpha HOM05D004898 ORTHO05D005574 3.7e-113 412.9 541 42.0
Eucgr.L01902 Eucalyptus grandis HOM05D004898 ORTHO05D005574 3.4e-98 363.2 226 80.5
BcaC06g31368 Brassica carinata HOM05D004898 ORTHO05D005574 7.6e-98 362.1 194 93.3
Nitab4.5_0003626g0040 Nicotiana tabacum HOM05D004898 ORTHO05D005574 1.5e-90 337.8 264 67.8
BcaC06g31369 Brassica carinata HOM05D004898 ORTHO05D005574 9.9e-74 282.0 151 96.0
FAN22G1464 Fragaria x ananassa HOM05D004898 ORTHO05D005574 1.3e-60 238.4 195 64.6
Glyma.07G265900 Glycine max HOM05D004898 ORTHO05D005574 5.3e-59 233.0 179 67.0
Glyma.09G010800 Glycine max HOM05D004898 ORTHO05D005574 5.3e-51 206.5 171 60.8
vmacro03636 Vaccinium macrocarpon HOM05D004898 ORTHO05D005574 6.3e-44 183.0 139 66.2
CSS0039577 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 1.4e-43 181.8 151 62.3
TPR.G39985 Trifolium pratense HOM05D004898 ORTHO05D005574 5.3e-43 179.9 162 57.4
MD10G1332700 Malus domestica HOM05D004898 ORTHO05D005574 4.5e-42 176.8 143 62.2
TPR.G16605 Trifolium pratense HOM05D004898 ORTHO05D005574 1.7e-33 148.3 151 54.3
CiPaw.02G047500 Carya illinoinensis HOM05D004898 ORTHO05D005574 2.5e-32 144.4 97 69.1
Oeu026504.1 Olea europaea HOM05D004898 ORTHO05D005574 1.5e-29 135.2 149 51.7
SEGI_30483 Sequoiadendron giganteum HOM05D004898 ORTHO05D005574 2.9e-25 120.9 110 60.0
MD10G1333600 Malus domestica HOM05D004898 ORTHO05D005574 2.6e-21 107.8 76 71.1
TPR.G14633 Trifolium pratense HOM05D004898 ORTHO05D005574 7.0e-19 99.8 71 67.6
Cre06.g251650 Chlamydomonas reinhardtii HOM05D004898 ORTHO05D005574 1.2e-18 99.0 492 23.0
Cfa025410 Carpinus fangiana HOM05D004898 ORTHO05D005574 3.5e-18 97.4 521 21.9
SEGI_07134 Sequoiadendron giganteum HOM05D001687 ORTHO05D001608 3.7e-12 77.4 63 60.3
SEGI_26459 Sequoiadendron giganteum HOM05D000824 ORTHO05D001608 3.7e-12 77.4 63 60.3
Zm00001eb349350 Zea mays HOM05D004186 ORTHO05D006965 5.0e-09 67.0 46 60.9
Zm00001eb361420 Zea mays HOM05D032919 ORTHO05D005574 8.6e-09 66.2 50 56.0
Zm00001eb140760 Zea mays HOM05D004186 ORTHO05D003061 1.1e-08 65.9 46 60.9
BcaB05g22957 Brassica carinata HOM05D004898 ORTHO05D091614 1.5e-08 65.5 33 87.9
VMungo1383G2427 Vigna mungo HOM05D035140 ORTHO05D005574 1.8e-06 58.5 45 60.0


User provided reference genes

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