Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g11650 Schrenkiella parvula HOM05D005023 ORTHO05D006009 3.7e-166 588.2 304 100.0
Thhalv10000976m.g Eutrema salsugineum HOM05D005023 ORTHO05D006009 1.9e-122 443.0 309 78.6
AT5G46850 Arabidopsis thaliana HOM05D005023 ORTHO05D006009 2.0e-119 433.0 301 76.4
AL8G11450 Arabidopsis lyrata HOM05D005023 ORTHO05D006009 3.7e-118 428.7 309 75.1
Carub.0008s0106 Capsella rubella HOM05D005023 ORTHO05D006009 6.3e-118 427.9 307 74.6
BcaC06g31439 Brassica carinata HOM05D005023 ORTHO05D006009 1.7e-115 419.9 298 76.8
CARHR174600 Cardamine hirsuta HOM05D005023 ORTHO05D006009 1.5e-114 416.8 308 73.4
BraA06t27429Z Brassica rapa HOM05D005023 ORTHO05D006009 3.6e-113 412.1 298 75.8
A06p45570 Brassica napus HOM05D005023 ORTHO05D006009 8.0e-113 411.0 298 75.5
BolC7t43557H Brassica oleracea HOM05D005023 ORTHO05D006009 1.8e-112 409.8 298 75.2
Aa31sc182G50 Aethionema arabicum HOM05D005023 ORTHO05D006009 3.0e-112 409.1 308 70.8
BcaC06g34337 Brassica carinata HOM05D005023 ORTHO05D006009 2.0e-111 406.4 298 74.5
C07p30210 Brassica napus HOM05D005023 ORTHO05D006009 2.0e-111 406.4 298 74.5
THA.LOC104806696 Tarenaya hassleriana HOM05D005023 ORTHO05D006009 2.8e-89 332.8 299 61.9
COL.COLO4_16967 Corchorus olitorius HOM05D005023 ORTHO05D006009 2.4e-56 223.4 314 44.3
QL12p004398 Quercus lobata HOM05D005023 ORTHO05D006009 3.1e-56 223.0 304 44.7
Duzib084G0965 Durio zibethinus HOM05D005023 ORTHO05D006009 2.1e-52 210.3 265 47.2
Gohir.D12G209350 Gossypium hirsutum HOM05D005023 ORTHO05D006009 4.6e-52 209.1 287 44.9
Ciclev10016033m.g Citrus clementina HOM05D005023 ORTHO05D006009 1.0e-51 208.0 301 43.2
Gohir.A12G206900 Gossypium hirsutum HOM05D005023 ORTHO05D006009 1.3e-51 207.6 306 43.5
Gorai.008G224900 Gossypium raimondii HOM05D005023 ORTHO05D006009 1.3e-51 207.6 306 43.1
Cfa012488 Carpinus fangiana HOM05D005023 ORTHO05D006009 2.3e-51 206.8 299 41.8
CiPaw.11G096900 Carya illinoinensis HOM05D005023 ORTHO05D006009 3.0e-51 206.5 292 42.5
Thecc.03G307500 Theobroma cacao HOM05D005023 ORTHO05D006009 3.9e-51 206.1 305 43.0
Cpa.g.sc90.15 Carica papaya HOM05D005023 ORTHO05D006009 5.1e-51 205.7 277 43.3
Actinidia09175 Actinidia chinensis HOM05D005023 ORTHO05D006009 2.5e-50 203.4 300 43.0
Dinv28986 Davidia involucrata HOM05D005023 ORTHO05D006009 2.5e-50 203.4 300 43.7
Atru.chr12.846 Acer truncatum HOM05D005023 ORTHO05D006009 5.6e-50 202.2 309 42.4
CANSAT54G0648 Cannabis sativa HOM05D005023 ORTHO05D006009 9.6e-50 201.4 296 43.2
Aqoxy1G01584 Aquilegia oxysepala HOM05D005023 ORTHO05D006009 2.8e-49 199.9 310 41.9
Potri.003G095200 Populus trichocarpa HOM05D005023 ORTHO05D006009 4.8e-49 199.1 280 45.7
GSVIVG01013101001 Vitis vinifera HOM05D005023 ORTHO05D006009 4.8e-49 199.1 299 41.8
Hma1.2p1_2161F.1_g315620 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 6.2e-49 198.7 301 43.5
Peaxi162Scf00170g00918 Petunia axillaris HOM05D005023 ORTHO05D006009 6.2e-49 198.7 268 44.4
arahy.Tifrunner.gnm1.ann1.J93PEP Arachis hypogaea HOM05D005023 ORTHO05D006009 1.1e-48 198.0 306 41.2
Ca_22661_v3 Cicer arietinum L. HOM05D005023 ORTHO05D006009 1.1e-48 198.0 278 45.3
Manes.02G223400 Manihot esculenta HOM05D005023 ORTHO05D006009 3.1e-48 196.4 304 41.4
Nitab4.5_0002380g0110 Nicotiana tabacum HOM05D005023 ORTHO05D006009 4.0e-48 196.1 259 45.2
Lj6g0028231 Lotus japonicus HOM05D005023 ORTHO05D006009 5.3e-48 195.7 296 41.9
MD06G1038100 Malus domestica HOM05D005023 ORTHO05D006009 5.3e-48 195.7 301 39.9
Phvul.009G009200 Phaseolus vulgaris HOM05D005023 ORTHO05D006009 5.3e-48 195.7 257 47.5
Medtr8g066330 Medicago truncatula HOM05D005023 ORTHO05D006009 6.9e-48 195.3 303 42.6
Sabra01G0107600 Salix brachista HOM05D005023 ORTHO05D006009 6.9e-48 195.3 319 41.7
arahy.Tifrunner.gnm1.ann1.6CH5L4 Arachis hypogaea HOM05D005023 ORTHO05D006009 9.0e-48 194.9 306 41.5
ECA240G3323 Erigeron canadensis HOM05D005023 ORTHO05D006009 9.0e-48 194.9 264 44.3
arahy.Tifrunner.gnm1.ann1.NK2KWA Arachis hypogaea HOM05D005023 ORTHO05D006009 1.2e-47 194.5 306 41.5
Prupe.5G030700 Prunus persica HOM05D005023 ORTHO05D006009 1.2e-47 194.5 311 39.2
Lsat_1_v5_gn_6_80180 Lactuca sativa HOM05D005023 ORTHO05D006009 1.5e-47 194.1 275 40.7
CAN.G298.60 Capsicum annuum HOM05D005023 ORTHO05D006009 2.0e-47 193.7 264 43.9
CAN.G298.61 Capsicum annuum HOM05D005023 ORTHO05D006009 2.0e-47 193.7 264 43.9
CAN.G726.32 Capsicum annuum HOM05D005023 ORTHO05D006009 2.0e-47 193.7 264 43.9
PGR042G2438 Punica granatum HOM05D005023 ORTHO05D006009 2.0e-47 193.7 296 40.2
TPR.G14159 Trifolium pratense HOM05D005023 ORTHO05D006009 2.0e-47 193.7 279 45.2
AUR62033976 Chenopodium quinoa HOM05D005023 ORTHO05D006009 2.6e-47 193.4 266 45.1
TWI60G0688 Tripterygium wilfordii HOM05D005023 ORTHO05D006009 3.4e-47 193.0 261 42.1
CSS0008599 Camellia sinensis var. sinensis HOM05D005023 ORTHO05D006009 4.5e-47 192.6 261 44.4
RcHm_v2.0_Chr7g0211361 Rosa chinensis HOM05D005023 ORTHO05D006009 4.5e-47 192.6 296 39.2
PGSC0003DMG400014810 Solanum tuberosum HOM05D005023 ORTHO05D006009 4.5e-47 192.6 264 44.7
SalBow6G6255 Salvia bowleyana HOM05D005023 ORTHO05D006009 7.6e-47 191.8 257 47.5
SalBow6G4088 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.0e-46 191.4 256 47.3
SalBow6G6846 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.0e-46 191.4 248 47.2
FAN08G0704 Fragaria x ananassa HOM05D005023 ORTHO05D006009 1.3e-46 191.0 310 37.7
SalBow8G0269 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.7e-46 190.7 253 47.4
Nitab4.5_0000353g0050 Nicotiana tabacum HOM05D005023 ORTHO05D006009 2.9e-46 189.9 264 44.3
Nitab4.5_0004839g0010 Nicotiana tabacum HOM05D005023 ORTHO05D006009 2.9e-46 189.9 262 43.5
Solyc08g076570.3 Solanum lycopersicum HOM05D005023 ORTHO05D006009 2.9e-46 189.9 260 44.6
SalBow6G2872 Salvia bowleyana HOM05D005023 ORTHO05D006009 3.8e-46 189.5 248 47.2
SalBow6G3389 Salvia bowleyana HOM05D005023 ORTHO05D006009 3.8e-46 189.5 248 47.2
SalBow6G3524 Salvia bowleyana HOM05D005023 ORTHO05D006009 3.8e-46 189.5 248 47.2
EL10Ac8g19220 Beta vulgaris HOM05D005023 ORTHO05D006009 6.5e-46 188.7 300 39.3
Nitab4.5_0004669g0010 Nicotiana tabacum HOM05D005023 ORTHO05D006009 6.5e-46 188.7 248 46.0
Psat4g122280 Pisum sativum HOM05D005023 ORTHO05D006009 6.5e-46 188.7 254 46.5
SalBow6G3383 Salvia bowleyana HOM05D005023 ORTHO05D006009 6.5e-46 188.7 248 46.8
SalBow6G4332 Salvia bowleyana HOM05D005023 ORTHO05D006009 6.5e-46 188.7 248 46.8
SalBow6G6227 Salvia bowleyana HOM05D005023 ORTHO05D006009 6.5e-46 188.7 248 46.8
Migut.E00780 Erythranthe guttata HOM05D005023 ORTHO05D006009 1.1e-45 188.0 254 44.9
SalBow6G1717 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.4e-45 187.6 248 46.8
SalBow6G6031 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.4e-45 187.6 248 46.8
Sopen08g025130 Solanum pennellii HOM05D005023 ORTHO05D006009 1.4e-45 187.6 248 45.2
Actinidia25987 Actinidia chinensis HOM05D005023 ORTHO05D006009 3.2e-45 186.4 253 45.5
Cc08_g03230 Coffea canephora HOM05D005023 ORTHO05D006009 4.2e-45 186.0 263 44.1
FvH4_5g22760 Fragaria vesca HOM05D005023 ORTHO05D006009 5.5e-45 185.7 310 37.1
FAN18G3597 Fragaria x ananassa HOM05D005023 ORTHO05D006009 5.5e-45 185.7 310 37.1
DCAR_031128 Daucus carota HOM05D005023 ORTHO05D006009 7.1e-45 185.3 266 45.1
FAN13G2198 Fragaria x ananassa HOM05D005023 ORTHO05D006009 9.3e-45 184.9 297 37.4
FAN13G2978 Fragaria x ananassa HOM05D005023 ORTHO05D006009 9.3e-45 184.9 297 37.4
HanXRQChr03g0083581 Helianthus annuus HOM05D005023 ORTHO05D006009 1.2e-44 184.5 261 42.1
Rhsim07G0130800 Rhododendron simsii HOM05D005023 ORTHO05D006009 1.6e-44 184.1 259 43.6
FAN18G4268 Fragaria x ananassa HOM05D005023 ORTHO05D006009 2.7e-44 183.3 310 36.8
Eucgr.E00250 Eucalyptus grandis HOM05D005023 ORTHO05D006009 3.5e-44 183.0 303 38.3
Glyma.06G013600 Glycine max HOM05D005023 ORTHO05D006009 3.5e-44 183.0 263 43.3
Haze_08177 Corylus avellana HOM05D005023 ORTHO05D006009 1.0e-43 181.4 207 48.8
Lalb_Chr25g0286701 Lupinus albus HOM05D005023 ORTHO05D006009 1.3e-43 181.0 265 43.0
Hund11209 Selenicereus undatus HOM05D005023 ORTHO05D006009 2.3e-43 180.3 267 42.3
Glyma.04G013700 Glycine max HOM05D005023 ORTHO05D006009 3.0e-43 179.9 248 46.0
Lj2A234G45 Lonicera japonica HOM05D005023 ORTHO05D006009 6.7e-43 178.7 297 40.1
PSO170G6706 Papaver somniferum HOM05D005023 ORTHO05D006009 1.5e-42 177.6 283 41.7
Psat4g122680 Pisum sativum HOM05D005023 ORTHO05D006009 1.5e-42 177.6 233 47.6
vmacro00304 Vaccinium macrocarpon HOM05D005023 ORTHO05D006009 1.9e-42 177.2 235 44.3
Ah.12g065340 Amaranthus hybridus HOM05D005023 ORTHO05D006009 2.5e-42 176.8 250 42.8
PSO782G3892 Papaver somniferum HOM05D005023 ORTHO05D006009 2.1e-41 173.7 278 41.7
SGA_v2.0_scaffold6G03150 Striga asiatica HOM05D005023 ORTHO05D006009 2.1e-41 173.7 277 40.4
SalBow6G3781 Salvia bowleyana HOM05D005023 ORTHO05D006009 3.7e-41 172.9 231 47.6
arahy.Tifrunner.gnm1.ann1.GAHP45 Arachis hypogaea HOM05D005023 ORTHO05D006009 8.2e-41 171.8 270 40.7
Sabra03G0064200 Salix brachista HOM05D005023 ORTHO05D006009 8.2e-41 171.8 216 47.7
MSTRG.1995 Avicennia marina HOM05D005023 ORTHO05D006009 4.1e-40 169.5 254 44.5
PSO302G0152 Papaver somniferum HOM05D005023 ORTHO05D006009 1.5e-39 167.5 280 40.4
TPR.G3350 Trifolium pratense HOM05D005023 ORTHO05D006009 7.6e-39 165.2 195 49.2
MBI02_g28332_MAGBIO Magnolia biondii HOM05D005023 ORTHO05D006009 1.4e-37 161.0 258 41.1
FAN04G1126 Fragaria x ananassa HOM05D005023 ORTHO05D006009 1.9e-37 160.6 235 39.1
Sed0002054 Sechium edule HOM05D005023 ORTHO05D006009 4.6e-36 156.0 249 42.6
PSO063G5178 Papaver somniferum HOM05D005023 ORTHO05D006009 2.3e-35 153.7 183 47.5
ClCG04G001320 Citrullus lanatus HOM05D005023 ORTHO05D006009 6.7e-35 152.1 250 41.6
SalBow6G0983 Salvia bowleyana HOM05D005023 ORTHO05D006009 8.7e-35 151.8 209 46.4
unitig_21.g20893 Utricularia gibba HOM05D005023 ORTHO05D004745 8.7e-35 151.8 227 43.2
CDE02G4581 Ceratophyllum demersum HOM05D005023 ORTHO05D006009 1.1e-34 151.4 266 36.8
Nn7g38116 Nelumbo nucifera HOM05D005023 ORTHO05D006009 1.9e-34 150.6 256 38.7
SalBow6G5471 Salvia bowleyana HOM05D005023 ORTHO05D006009 3.3e-34 149.8 191 46.6
SalBow6G0969 Salvia bowleyana HOM05D005023 ORTHO05D006009 3.7e-33 146.4 167 51.5
Os12g0596900 Oryza sativa ssp. japonica HOM05D005023 ORTHO05D006009 3.1e-32 143.3 248 37.9
SalBow6G1311 Salvia bowleyana HOM05D005023 ORTHO05D006009 3.1e-32 143.3 167 50.9
Zm00001eb030880 Zea mays HOM05D005023 ORTHO05D006009 4.5e-31 139.4 207 41.5
Sc01g0007280 Simmondsia chinensis HOM05D005023 ORTHO05D006009 1.0e-30 138.3 275 36.0
HPP92_014902 Vanilla planifolia HOM05D005023 ORTHO05D006009 1.0e-30 138.3 237 36.3
SHI20240 Sapria himalayana HOM05D000452 ORTHO05D000647 2.2e-30 137.1 256 36.7
HPP92_014897 Vanilla planifolia HOM05D005023 ORTHO05D006009 1.1e-29 134.8 241 36.5
CsaV3_1G033210 Cucumis sativus L. HOM05D000021 ORTHO05D000010 4.2e-29 132.9 220 40.0
Hma1.2p1_1594F.1_g292650 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 5.5e-29 132.5 214 42.5
ATR0580G166 Amborella trichopoda HOM05D005237 ORTHO05D006189 6.7e-27 125.6 172 43.6
Hma1.2p1_2161F.1_g315630 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 2.0e-26 124.0 153 49.7
SalBow6G6268 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.3e-25 121.3 147 46.9
Solyc08g076550.3 Solanum lycopersicum HOM05D005023 ORTHO05D006009 3.7e-25 119.8 161 46.0
SalBow6G0951 Salvia bowleyana HOM05D005023 ORTHO05D006009 4.1e-24 116.3 136 47.8
MELO3C033076.2 Cucumis melo HOM05D005023 ORTHO05D006009 2.0e-23 114.0 241 38.2
Mapoly0088s0063 Marchantia polymorpha HOM05D005023 ORTHO05D006009 2.7e-20 103.6 201 32.8
Actinidia09177 Actinidia chinensis HOM05D005023 ORTHO05D006009 1.4e-19 101.3 282 30.5
Hma1.2p1_0572F.1_g181170 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 1.1e-18 98.2 128 48.4
Pp3c13_7870 Physcomitrium patens HOM05D005023 ORTHO05D006009 3.8e-14 83.2 204 31.9
SMO358G0075 Selaginella moellendorffii HOM05D005023 ORTHO05D006009 4.2e-13 79.7 197 31.0
AagrBONN_evm.TU.Sc2ySwM_344.1294 Anthoceros agrestis HOM05D005023 ORTHO05D006009 2.7e-12 77.0 155 34.8
TAR375G0008 Trochodendron aralioides HOM05D005023 ORTHO05D006009 4.4e-10 69.7 180 29.4
CSS0036970 Camellia sinensis var. sinensis HOM05D005023 ORTHO05D006009 1.7e-09 67.8 93 40.9
MELO3C011047.2 Cucumis melo HOM05D005023 ORTHO05D006009 1.7e-06 57.8 100 41.0


User provided reference genes

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