Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g11640 Schrenkiella parvula HOM05D005450 ORTHO05D006880 2.4e-266 921.8 525 100.0
Thhalv10000858m.g Eutrema salsugineum HOM05D005450 ORTHO05D006880 7.6e-220 767.3 530 87.4
AL8G11490 Arabidopsis lyrata HOM05D005450 ORTHO05D006880 3.7e-206 721.8 527 79.3
Carub.0008s0107 Capsella rubella HOM05D005450 ORTHO05D006880 2.5e-191 672.5 529 76.9
AT5G46840 Arabidopsis thaliana HOM05D005450 ORTHO05D006880 2.0e-188 662.9 528 76.1
BcaC06g31440 Brassica carinata HOM05D005450 ORTHO05D006880 4.8e-182 641.7 533 72.8
A06p45580 Brassica napus HOM05D005450 ORTHO05D006880 5.5e-178 628.2 522 71.6
BcaC06g34338 Brassica carinata HOM05D005450 ORTHO05D006880 1.6e-177 626.7 525 71.4
C07p30200 Brassica napus HOM05D005450 ORTHO05D006880 1.6e-177 626.7 525 71.4
BolC7t43556H Brassica oleracea HOM05D005450 ORTHO05D006880 6.1e-177 624.8 531 71.4
BraA06t27430Z Brassica rapa HOM05D005450 ORTHO05D006880 7.9e-177 624.4 522 71.3
CARHR174610 Cardamine hirsuta HOM05D005450 ORTHO05D006880 1.0e-176 624.0 531 74.6
Aa31LG9G6020 Aethionema arabicum HOM05D005450 ORTHO05D006880 1.7e-163 580.1 537 66.7
THA.LOC104806699 Tarenaya hassleriana HOM05D005450 ORTHO05D006880 3.3e-138 496.1 545 58.7
Cpa.g.c28481.1 Carica papaya HOM05D005450 ORTHO05D006880 4.1e-125 452.6 574 54.0
VMungo1215G2703 Vigna mungo HOM05D005450 ORTHO05D006880 1.1e-117 427.9 562 51.6
Duzib205G1163 Durio zibethinus HOM05D005450 ORTHO05D006880 1.6e-116 424.1 544 52.0
TWI81G0857 Tripterygium wilfordii HOM05D005450 ORTHO05D006880 7.8e-116 421.8 565 50.3
Manes.15G193000 Manihot esculenta HOM05D005450 ORTHO05D006880 3.3e-114 416.4 570 49.1
Glyma.01G016900 Glycine max HOM05D005450 ORTHO05D006880 4.7e-113 412.5 557 49.4
Gohir.A12G207500 Gossypium hirsutum HOM05D005450 ORTHO05D006880 4.7e-113 412.5 552 51.6
Phvul.002G139900 Phaseolus vulgaris HOM05D005450 ORTHO05D006880 6.2e-113 412.1 575 49.2
Thecc.03G305800 Theobroma cacao HOM05D005450 ORTHO05D006880 8.1e-113 411.8 559 49.6
Gorai.008G225500 Gossypium raimondii HOM05D005450 ORTHO05D006880 1.4e-112 411.0 550 51.5
Prupe.5G032300 Prunus persica HOM05D005450 ORTHO05D006880 1.4e-112 411.0 577 49.6
Potri.003G093900 Populus trichocarpa HOM05D005450 ORTHO05D006880 2.4e-112 410.2 536 49.8
Potri.001G140300 Populus trichocarpa HOM05D005450 ORTHO05D006880 4.0e-112 409.5 539 51.2
MD16G1272400 Malus domestica HOM05D005450 ORTHO05D006880 6.9e-112 408.7 566 51.1
Sabra01G0109200 Salix brachista HOM05D005450 ORTHO05D006880 8.9e-112 408.3 541 50.6
Gohir.D12G209900 Gossypium hirsutum HOM05D005450 ORTHO05D006880 1.2e-111 407.9 550 51.1
PGR031G1299 Punica granatum HOM05D005450 ORTHO05D006880 2.2e-110 403.7 591 48.4
TWI60G0421 Tripterygium wilfordii HOM05D005450 ORTHO05D006880 4.6e-108 396.0 570 48.1
FvH4_5g22460 Fragaria vesca HOM05D005450 ORTHO05D006880 7.8e-108 395.2 563 48.5
FAN18G0707 Fragaria x ananassa HOM05D005450 ORTHO05D006880 7.8e-108 395.2 563 48.5
FAN18G2323 Fragaria x ananassa HOM05D005450 ORTHO05D006880 1.3e-107 394.4 563 48.5
FAN08G0023 Fragaria x ananassa HOM05D005450 ORTHO05D006880 5.1e-107 392.5 552 48.7
Glyma.09G205900 Glycine max HOM05D005450 ORTHO05D006880 1.1e-106 391.3 537 50.5
FAN04G1305 Fragaria x ananassa HOM05D005450 ORTHO05D006880 3.3e-106 389.8 560 47.7
FAN13G0945 Fragaria x ananassa HOM05D005450 ORTHO05D006880 5.6e-106 389.0 552 48.4
RcHm_v2.0_Chr7g0210251 Rosa chinensis HOM05D005450 ORTHO05D006880 1.3e-105 387.9 573 46.9
CiPaw.11G095800 Carya illinoinensis HOM05D005450 ORTHO05D006880 3.6e-105 386.3 406 57.1
vmacro00310 Vaccinium macrocarpon HOM05D005450 ORTHO05D006880 1.4e-104 384.4 398 56.3
Aqoxy3G02278 Aquilegia oxysepala HOM05D005450 ORTHO05D006880 6.9e-104 382.1 442 53.8
arahy.Tifrunner.gnm1.ann1.95XRJP Arachis hypogaea HOM05D005450 ORTHO05D006880 6.9e-104 382.1 543 47.9
arahy.Tifrunner.gnm1.ann1.M4GMJK Arachis hypogaea HOM05D005450 ORTHO05D006880 6.9e-104 382.1 543 47.9
MD06G1037000 Malus domestica HOM05D005450 ORTHO05D006880 9.0e-104 381.7 568 47.9
Actinidia03357 Actinidia chinensis HOM05D005450 ORTHO05D006880 1.5e-103 380.9 570 48.2
Hma1.2p1_0303F.1_g118850 Hydrangea macrophylla HOM05D005450 ORTHO05D006880 2.6e-103 380.2 557 47.8
Actinidia25982 Actinidia chinensis HOM05D005450 ORTHO05D006880 2.9e-102 376.7 580 45.5
CANSAT21G1200 Cannabis sativa HOM05D005450 ORTHO05D006880 2.9e-102 376.7 538 47.0
Hund11224 Selenicereus undatus HOM05D005450 ORTHO05D006880 3.8e-102 376.3 550 48.0
Peaxi162Scf00170g01229 Petunia axillaris HOM05D005450 ORTHO05D006880 4.9e-102 375.9 545 47.9
Lalb_Chr05g0215901 Lupinus albus HOM05D005450 ORTHO05D006880 6.4e-102 375.6 583 44.4
Nn3g19446 Nelumbo nucifera HOM05D005450 ORTHO05D006880 6.4e-102 375.6 396 57.6
TAR375G0838 Trochodendron aralioides HOM05D005450 ORTHO05D006880 1.2e-100 371.3 426 54.9
Solyc08g076660.3 Solanum lycopersicum HOM05D005450 ORTHO05D006880 2.1e-100 370.5 591 44.5
Cc08_g03160 Coffea canephora HOM05D005450 ORTHO05D006880 3.5e-100 369.8 550 47.3
ECA233G1178 Erigeron canadensis HOM05D005450 ORTHO05D006880 3.5e-100 369.8 551 45.0
DCAR_008245 Daucus carota HOM05D005450 ORTHO05D006880 7.9e-100 368.6 572 46.5
Dinv25238 Davidia involucrata HOM05D005450 ORTHO05D006880 1.3e-99 367.9 401 57.1
EL10Ac5g12080 Beta vulgaris HOM05D005450 ORTHO05D006880 1.8e-99 367.5 506 50.0
Sed0009079 Sechium edule HOM05D005450 ORTHO05D006880 5.1e-99 365.9 549 45.7
Migut.E00784 Erythranthe guttata HOM05D005450 ORTHO05D006880 1.5e-98 364.4 547 48.3
MSTRG.1990 Avicennia marina HOM05D005450 ORTHO05D006880 3.3e-98 363.2 570 45.8
Ciclev10014807m.g Citrus clementina HOM05D005450 ORTHO05D006880 4.3e-98 362.8 578 44.6
unitig_699.g19789 Utricularia gibba HOM05D005450 ORTHO05D001249 9.6e-98 361.7 547 46.1
Hma1.2p1_0303F.1_g118860 Hydrangea macrophylla HOM05D005450 ORTHO05D006880 1.6e-97 360.9 404 55.4
PGSC0003DMG400017545 Solanum tuberosum HOM05D005450 ORTHO05D006880 1.6e-97 360.9 583 44.3
QL12p004713 Quercus lobata HOM05D005450 ORTHO05D006880 2.1e-97 360.5 395 54.7
Lj2A234T41 Lonicera japonica HOM05D005450 ORTHO05D006880 2.8e-97 360.1 483 49.9
SGA_v2.0_scaffold6G03148 Striga asiatica HOM05D005450 ORTHO05D001776 3.6e-97 359.8 586 45.2
PSO782G2687 Papaver somniferum HOM05D005450 ORTHO05D006880 4.8e-97 359.4 407 54.1
Sopen08g025210 Solanum pennellii HOM05D005450 ORTHO05D006880 6.2e-97 359.0 580 43.8
CSS0022331 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 8.1e-97 358.6 555 45.6
CSS0031650 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 4.0e-96 356.3 454 52.2
HanXRQChr13g0395441 Helianthus annuus HOM05D005450 ORTHO05D006880 5.3e-96 355.9 555 45.2
Lsat_1_v5_gn_6_4021 Lactuca sativa HOM05D005450 ORTHO05D006880 6.9e-96 355.5 543 44.8
TPR.G8114 Trifolium pratense HOM05D005450 ORTHO05D006880 6.9e-96 355.5 566 44.5
Medtr5g029900 Medicago truncatula HOM05D005450 ORTHO05D006880 2.0e-95 354.0 557 44.2
Sc22g0001610 Simmondsia chinensis HOM05D005450 ORTHO05D006880 2.6e-95 353.6 513 48.3
Eucgr.D02212 Eucalyptus grandis HOM05D005450 ORTHO05D006880 4.5e-95 352.8 587 45.7
Rhsim11G0018700 Rhododendron simsii HOM05D005450 ORTHO05D006880 1.7e-94 350.9 398 53.5
PSO063G4121 Papaver somniferum HOM05D005450 ORTHO05D006880 2.2e-94 350.5 399 52.9
Lj2g0023622 Lotus japonicus HOM05D005450 ORTHO05D006880 3.8e-94 349.7 554 45.8
ClCG10G001470 Citrullus lanatus HOM05D005450 ORTHO05D006880 4.9e-94 349.4 595 43.2
MBI04_g05750_MAGBIO Magnolia biondii HOM05D005450 ORTHO05D006880 1.1e-93 348.2 391 54.0
Nitab4.5_0002203g0010 Nicotiana tabacum HOM05D005450 ORTHO05D006880 1.1e-93 348.2 549 45.5
CSS0005386 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 1.9e-93 347.4 559 46.5
MELO3C013841.2 Cucumis melo HOM05D005450 ORTHO05D006880 2.4e-93 347.1 579 44.6
CsaV3_3G001550 Cucumis sativus L. HOM05D005450 ORTHO05D006880 3.2e-93 346.7 562 45.4
HanXRQChr04g0099011 Helianthus annuus HOM05D005450 ORTHO05D006880 3.2e-93 346.7 555 45.0
Haze_08190 Corylus avellana HOM05D005450 ORTHO05D006880 4.2e-93 346.3 412 52.7
Psat2g137240 Pisum sativum HOM05D005450 ORTHO05D006880 1.6e-92 344.4 568 43.5
COL.COLO4_16985 Corchorus olitorius HOM05D005450 ORTHO05D006880 4.6e-92 342.8 531 46.0
Ca_25196_v3 Cicer arietinum L. HOM05D005450 ORTHO05D006880 1.3e-91 341.3 582 44.7
AUR62018696 Chenopodium quinoa HOM05D005450 ORTHO05D006880 5.1e-91 339.3 514 48.6
GSVIVG01013130001 Vitis vinifera HOM05D005450 ORTHO05D006880 2.5e-90 337.0 439 49.9
AUR62007307 Chenopodium quinoa HOM05D005450 ORTHO05D006880 2.1e-89 334.0 379 53.8
Nitab4.5_0000353g0110 Nicotiana tabacum HOM05D005450 ORTHO05D006880 2.1e-89 334.0 523 45.3
Ah.12g055200 Amaranthus hybridus HOM05D005450 ORTHO05D006880 2.9e-86 323.6 462 48.3
Zm00001eb210550 Zea mays HOM05D005450 ORTHO05D006880 1.8e-83 314.3 503 44.3
Atru.chr6.1648 Acer truncatum HOM05D005450 ORTHO05D006880 2.3e-83 313.9 519 42.8
Lalb_Chr16g0381251 Lupinus albus HOM05D005450 ORTHO05D006880 5.7e-82 309.3 422 50.0
ATR0665G143 Amborella trichopoda HOM05D005450 ORTHO05D006880 2.8e-81 307.0 376 48.4
CDE11G1012 Ceratophyllum demersum HOM05D005450 ORTHO05D006880 6.3e-81 305.8 451 44.8
Os03g0854300 Oryza sativa ssp. japonica HOM05D005450 ORTHO05D006880 6.3e-81 305.8 503 43.3
vmacro14185 Vaccinium macrocarpon HOM05D005450 ORTHO05D006880 6.3e-81 305.8 308 55.8
HPP92_020907 Vanilla planifolia HOM05D005450 ORTHO05D006880 2.0e-79 300.8 509 43.4
Actinidia14788 Actinidia chinensis HOM05D005450 ORTHO05D006880 9.3e-77 292.0 406 46.8
Sabra03G0063000 Salix brachista HOM05D005450 ORTHO05D006880 2.7e-76 290.4 541 42.9
Rhsim07G0129900 Rhododendron simsii HOM05D005450 ORTHO05D006880 3.0e-75 287.0 396 47.2
BcaC03g16894 Brassica carinata HOM05D005450 ORTHO05D006880 3.5e-55 220.3 195 66.2
CSS0028579 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 1.1e-53 215.3 140 73.6
CDE11G0708 Ceratophyllum demersum HOM05D005450 ORTHO05D006880 1.4e-48 198.4 296 40.9
CSS0022748 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 1.8e-48 198.0 131 72.5
SEGI_20635 Sequoiadendron giganteum HOM05D005450 ORTHO05D006880 3.5e-47 193.7 321 41.7
AagrBONN_evm.TU.Sc2ySwM_228.2336 Anthoceros agrestis HOM05D005450 ORTHO05D006880 4.5e-47 193.4 373 40.2
Aa31sc427G40 Aethionema arabicum HOM05D005450 ORTHO05D006880 6.5e-46 189.5 189 63.5
Pp3c17_19260 Physcomitrium patens HOM05D005450 ORTHO05D006880 7.2e-45 186.0 340 40.0
CBR_g19667 Chara braunii HOM05D005450 ORTHO05D006880 2.7e-44 184.1 288 42.4
Mapoly0168s0008 Marchantia polymorpha HOM05D005450 ORTHO05D006880 6.8e-43 179.5 452 33.2
BcaC03g16897 Brassica carinata HOM05D005450 ORTHO05D006880 2.8e-41 174.1 208 54.3
BolC2t10828H Brassica oleracea HOM05D005450 ORTHO05D006880 8.3e-41 172.6 199 55.8
C02p47920 Brassica napus HOM05D005450 ORTHO05D006880 4.1e-40 170.2 103 83.5
BolC2t10824H Brassica oleracea HOM05D005450 ORTHO05D006880 4.1e-40 170.2 103 83.5
C02p47970 Brassica napus HOM05D005450 ORTHO05D006880 2.5e-37 161.0 208 51.4
CSS0005944 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 2.5e-37 161.0 107 72.9
MCO09G223 Micromonas commoda HOM05D005450 ORTHO05D006880 2.8e-33 147.5 325 36.6
Cre16.g659150 Chlamydomonas reinhardtii HOM05D005450 ORTHO05D006880 2.7e-31 141.0 252 38.1
SHI51348 Sapria himalayana HOM05D005450 ORTHO05D006880 6.1e-28 129.8 253 37.5
arahy.Tifrunner.gnm1.ann1.HL18KG Arachis hypogaea HOM05D005450 ORTHO05D006880 3.2e-24 117.5 117 58.1
BraA02t08058Z Brassica rapa HOM05D005450 ORTHO05D006880 9.8e-18 95.9 184 41.8
C09p29040 Brassica napus HOM05D005450 ORTHO05D006880 2.2e-17 94.7 120 53.3
SEGI_27441 Sequoiadendron giganteum HOM05D005450 ORTHO05D006880 1.1e-16 92.4 120 49.2
Actinidia09179 Actinidia chinensis HOM05D005450 ORTHO05D006880 6.0e-15 86.7 65 64.6
Cfa024331 Carpinus fangiana HOM05D005450 ORTHO05D006880 1.0e-14 85.9 304 30.6
Lj2P235T37 Lonicera japonica HOM05D005450 ORTHO05D006880 6.6e-14 83.2 189 39.7
Cfa024074 Carpinus fangiana HOM05D000374 ORTHO05D000238 9.9e-10 69.3 192 28.6
BolC2t09527H Brassica oleracea HOM05D016962 ORTHO05D018713 1.3e-09 68.9 66 59.1
A09p46710 Brassica napus HOM05D016962 ORTHO05D018713 2.2e-09 68.2 66 59.1
BcaC08g44235 Brassica carinata HOM05D016962 ORTHO05D018713 6.4e-09 66.6 66 57.6
A04p16170 Brassica napus HOM05D016962 ORTHO05D018713 6.4e-09 66.6 66 57.6
C09p30520 Brassica napus HOM05D016962 ORTHO05D018713 6.4e-09 66.6 66 57.6
BolC3t21573H Brassica oleracea HOM05D016962 ORTHO05D018713 6.4e-09 66.6 66 57.6
BraA07t27824Z Brassica rapa HOM05D016962 ORTHO05D018713 1.1e-08 65.9 66 57.6
BcaC01g01512 Brassica carinata HOM05D016962 ORTHO05D018713 3.2e-08 64.3 66 56.1
FAN26G0896 Fragaria x ananassa HOM05D000285 ORTHO05D000241 1.6e-07 62.0 198 22.7
FAN28G2200 Fragaria x ananassa HOM05D000285 ORTHO05D000241 2.7e-07 61.2 198 22.7
BcaB02g06729 Brassica carinata HOM05D000297 ORTHO05D000336 1.7e-06 58.5 82 47.6
RcHm_v2.0_Chr2g0108481 Rosa chinensis HOM05D000285 ORTHO05D000241 3.0e-06 57.8 213 21.6


User provided reference genes

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