Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g11610 Schrenkiella parvula HOM05D008115 ORTHO05D010112 8.4e-97 357.1 187 100.0
Thhalv10001038m.g Eutrema salsugineum HOM05D008115 ORTHO05D010112 3.9e-86 321.6 187 89.3
Carub.0008s0112 Capsella rubella HOM05D008115 ORTHO05D010112 6.9e-83 310.8 191 85.3
CARHR174700 Cardamine hirsuta HOM05D008115 ORTHO05D010112 8.5e-81 303.9 187 84.5
BcaC04g21681 Brassica carinata HOM05D008115 ORTHO05D010112 1.1e-77 293.5 191 84.8
A09p22550 Brassica napus HOM05D008115 ORTHO05D010112 2.0e-77 292.7 190 84.7
BcaC03g16890 Brassica carinata HOM05D008115 ORTHO05D010112 1.7e-76 289.7 191 82.7
C02p47870 Brassica napus HOM05D008115 ORTHO05D010112 1.7e-76 289.7 191 82.7
BolC2t10820H Brassica oleracea HOM05D008115 ORTHO05D010112 1.7e-76 289.7 191 82.7
BraA02t08049Z Brassica rapa HOM05D008115 ORTHO05D010112 4.8e-76 288.1 189 83.1
AL8G11540 Arabidopsis lyrata HOM05D008115 ORTHO05D010112 5.9e-74 281.2 193 79.8
AT5G46795 Arabidopsis thaliana HOM05D008115 ORTHO05D010112 7.7e-74 280.8 190 80.0
A02p30340 Brassica napus HOM05D008115 ORTHO05D010112 7.7e-74 280.8 189 81.5
BcaB07g30820 Brassica carinata HOM05D008115 ORTHO05D010112 8.5e-73 277.3 191 82.2
BcaC06g34346 Brassica carinata HOM05D008115 ORTHO05D010112 1.5e-69 266.5 187 80.2
C07p30110 Brassica napus HOM05D008115 ORTHO05D010112 1.5e-69 266.5 187 80.2
BolC7t43551H Brassica oleracea HOM05D008115 ORTHO05D010112 1.5e-69 266.5 187 80.2
C09p28900 Brassica napus HOM05D008115 ORTHO05D010112 5.5e-64 248.1 155 86.5
Aa31LG9G6090 Aethionema arabicum HOM05D008115 ORTHO05D010112 1.7e-49 199.9 133 76.7
BraA09t37861Z Brassica rapa HOM05D008115 ORTHO05D010112 8.6e-41 171.0 193 58.5
A06p45650 Brassica napus HOM05D008115 ORTHO05D010112 3.6e-39 165.6 102 85.3
THA.LOC104806705 Tarenaya hassleriana HOM05D008115 ORTHO05D010112 5.0e-33 145.2 134 61.9
BolC9t55752H Brassica oleracea HOM05D008115 ORTHO05D010112 4.3e-32 142.1 77 90.9
Sabra03G0061200 Salix brachista HOM05D001142 ORTHO05D003453 1.8e-22 110.2 189 41.8
Potri.003G091600 Populus trichocarpa HOM05D008115 ORTHO05D010112 3.7e-20 102.4 192 42.2
Ciclev10012855m.g Citrus clementina HOM05D008115 ORTHO05D010112 1.4e-19 100.5 199 39.7
Prupe.5G036900 Prunus persica HOM05D008115 ORTHO05D010112 1.4e-19 100.5 199 41.2
Thecc.03G228100 Theobroma cacao HOM05D008115 ORTHO05D010112 4.1e-19 99.0 192 39.6
Duzib205G0809 Durio zibethinus HOM05D008115 ORTHO05D010112 5.4e-19 98.6 191 38.7
FAN18G3637 Fragaria x ananassa HOM05D008115 ORTHO05D010112 6.0e-18 95.1 159 44.7
Gohir.A08G156700 Gossypium hirsutum HOM05D008115 ORTHO05D010112 6.0e-18 95.1 184 39.1
Gohir.D08G177100 Gossypium hirsutum HOM05D008115 ORTHO05D010112 6.0e-18 95.1 184 39.1
Gorai.004G185300 Gossypium raimondii HOM05D008115 ORTHO05D010112 6.0e-18 95.1 184 39.1
Glyma.09G204000 Glycine max HOM05D008115 ORTHO05D010112 1.0e-17 94.4 190 39.5
PGR042G2453 Punica granatum HOM05D008115 ORTHO05D010112 1.0e-17 94.4 198 34.8
Sed0022703 Sechium edule HOM05D008115 ORTHO05D010112 1.0e-17 94.4 189 38.1
QL12p005248 Quercus lobata HOM05D008115 ORTHO05D010112 1.7e-17 93.6 197 39.6
QL12p005415 Quercus lobata HOM05D008115 ORTHO05D010112 1.7e-17 93.6 197 39.6
Lj2g0018003 Lotus japonicus HOM05D008115 ORTHO05D010112 8.6e-17 91.3 197 37.1
Medtr5g030520 Medicago truncatula HOM05D008115 ORTHO05D010112 5.6e-16 88.6 193 35.8
FAN04G2182 Fragaria x ananassa HOM05D008115 ORTHO05D010112 9.5e-16 87.8 214 37.9
arahy.Tifrunner.gnm1.ann1.6THG3J Arachis hypogaea HOM05D008115 ORTHO05D010112 2.8e-15 86.3 193 38.3
arahy.Tifrunner.gnm1.ann1.FLG01L Arachis hypogaea HOM05D008115 ORTHO05D010112 2.8e-15 86.3 193 38.3
FAN13G1458 Fragaria x ananassa HOM05D008115 ORTHO05D010112 2.8e-15 86.3 224 37.1
Manes.15G181340 Manihot esculenta HOM05D008115 ORTHO05D010112 6.2e-15 85.1 152 42.1
FAN08G1703 Fragaria x ananassa HOM05D008115 ORTHO05D010112 8.1e-15 84.7 215 37.2
CiPaw.12G063600 Carya illinoinensis HOM05D008115 ORTHO05D010112 3.1e-14 82.8 205 38.0
Aqoxy3G02357 Aquilegia oxysepala HOM05D008115 ORTHO05D010112 4.4e-13 79.0 94 51.1
Psat2g136120 Pisum sativum HOM05D008115 ORTHO05D010112 4.4e-13 79.0 198 33.3
GSVIVG01013162001 Vitis vinifera HOM05D008115 ORTHO05D010112 4.4e-13 79.0 192 35.9
VMungo1215G1226 Vigna mungo HOM05D008115 ORTHO05D010112 3.7e-12 75.9 187 32.6
Dinv28956 Davidia involucrata HOM05D000381 ORTHO05D010112 1.1e-11 74.3 188 35.1
RcHm_v2.0_Chr7g0209671 Rosa chinensis HOM05D008115 ORTHO05D010112 1.1e-11 74.3 82 50.0
CsaV3_3G049200 Cucumis sativus L. HOM05D008115 ORTHO05D010112 1.9e-11 73.6 201 34.8
Phvul.002G142000 Phaseolus vulgaris HOM05D008115 ORTHO05D010112 4.1e-11 72.4 196 33.2
TWI15G1224 Tripterygium wilfordii HOM05D008115 ORTHO05D010112 9.2e-11 71.2 195 37.9
TPR.G15446 Trifolium pratense HOM05D008115 ORTHO05D010112 6.0e-10 68.6 190 33.7
BcaC06g31443 Brassica carinata HOM05D008115 ORTHO05D010112 7.8e-10 68.2 54 77.8
AUR62018718 Chenopodium quinoa HOM05D008115 ORTHO05D010112 3.9e-09 65.9 191 36.1
MELO3C030366.2 Cucumis melo HOM05D008115 ORTHO05D010112 6.6e-09 65.1 79 45.6
DCAR_005627 Daucus carota HOM05D001142 ORTHO05D003453 6.6e-09 65.1 213 33.8
FvH4_5g22030 Fragaria vesca HOM05D008115 ORTHO05D010112 1.9e-08 63.5 98 50.0
Sopen02g017350 Solanum pennellii HOM05D008614 ORTHO05D010420 4.3e-08 62.4 84 38.1
EL10Ac5g12123 Beta vulgaris HOM05D008115 ORTHO05D010112 4.0e-06 55.8 175 29.7
Lsat_1_v5_gn_3_17720 Lactuca sativa HOM05D038245 ORTHO05D010112 5.2e-06 55.5 190 27.9
Solyc08g150100.1 Solanum lycopersicum HOM05D028028 ORTHO05D010112 5.2e-06 55.5 186 30.6


User provided reference genes

Program Settings