Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g11580 Schrenkiella parvula HOM05D011808 ORTHO05D006110 9.3e-62 240.0 116 100.0
SpUn0036_0030 Schrenkiella parvula HOM05D011808 ORTHO05D006110 9.3e-62 240.0 116 100.0
Thhalv10001070m.g Eutrema salsugineum HOM05D011808 ORTHO05D006110 7.9e-45 183.7 134 67.9
AL8G11570 Arabidopsis lyrata HOM05D011808 ORTHO05D006110 3.7e-42 174.9 134 68.7
AT5G46770 Arabidopsis thaliana HOM05D011808 ORTHO05D006110 5.3e-41 171.0 134 67.9
BcaC03g16885 Brassica carinata HOM05D011808 ORTHO05D006110 7.7e-40 167.2 136 66.9
C02p47820 Brassica napus HOM05D011808 ORTHO05D006110 7.7e-40 167.2 136 66.9
BolC2t10817H Brassica oleracea HOM05D011808 ORTHO05D006110 7.7e-40 167.2 136 66.9
Carub.0008s0115 Capsella rubella HOM05D011808 ORTHO05D006110 7.7e-40 167.2 136 66.9
A02p30310 Brassica napus HOM05D011808 ORTHO05D006110 2.9e-39 165.2 136 66.9
BraA02t08046Z Brassica rapa HOM05D011808 ORTHO05D006110 2.9e-39 165.2 136 66.9
CARHR174730 Cardamine hirsuta HOM05D011808 ORTHO05D006110 4.4e-35 151.4 133 61.7
BcaC06g31447 Brassica carinata HOM05D011808 ORTHO05D006110 1.4e-28 129.8 110 63.6
Cpa.g.sc1778.1 Carica papaya HOM05D006292 ORTHO05D006110 4.4e-11 71.6 125 39.2
Rhsim07G0127000 Rhododendron simsii HOM05D006292 ORTHO05D006110 7.5e-11 70.9 126 39.7
Peaxi162Scf00045g00010 Petunia axillaris HOM05D006292 ORTHO05D006110 4.1e-09 65.1 115 39.1
CSS0029921 Camellia sinensis var. sinensis HOM05D006292 ORTHO05D006110 5.4e-09 64.7 123 40.7
CSS0047178 Camellia sinensis var. sinensis HOM05D006292 ORTHO05D006110 5.4e-09 64.7 123 40.7
ClCG10G001600 Citrullus lanatus HOM05D006292 ORTHO05D006110 9.1e-09 63.9 113 38.9
CSS0025259 Camellia sinensis var. sinensis HOM05D006292 ORTHO05D006110 1.2e-08 63.5 118 37.3
COL.COLO4_17031 Corchorus olitorius HOM05D006292 ORTHO05D006110 1.6e-08 63.2 122 39.3
Thecc.03G227700 Theobroma cacao HOM05D006292 ORTHO05D006110 2.0e-08 62.8 125 36.0
Potri.001G142250 Populus trichocarpa HOM05D006292 ORTHO05D006110 4.5e-08 61.6 114 38.6
PGSC0003DMG400001160 Solanum tuberosum HOM05D006292 ORTHO05D006110 5.9e-08 61.2 116 38.8
Potri.003G092100 Populus trichocarpa HOM05D006292 ORTHO05D006110 7.7e-08 60.8 114 40.4
Ciclev10013401m.g Citrus clementina HOM05D006292 ORTHO05D006110 1.0e-07 60.5 123 37.4
Solyc08g005040.1 Solanum lycopersicum HOM05D006292 ORTHO05D006110 1.0e-07 60.5 116 39.7
MELO3C003411.2 Cucumis melo HOM05D011808 ORTHO05D006110 1.7e-07 59.7 109 37.6
Manes.15G181600 Manihot esculenta HOM05D006292 ORTHO05D006110 1.7e-07 59.7 111 38.7
Ca_06080_v3 Cicer arietinum L. HOM05D006292 ORTHO05D006110 2.9e-07 58.9 113 38.9
Gohir.A09G201400 Gossypium hirsutum HOM05D006292 ORTHO05D006110 6.6e-07 57.8 127 35.4
Sopen08g001060 Solanum pennellii HOM05D006292 ORTHO05D006110 6.6e-07 57.8 115 39.1
MELO3C013852.2 Cucumis melo HOM05D006292 ORTHO05D006110 1.1e-06 57.0 110 38.2
Psat2g135960 Pisum sativum HOM05D006292 ORTHO05D006110 1.1e-06 57.0 118 39.8
TPR.G3912 Trifolium pratense HOM05D006292 ORTHO05D006110 1.1e-06 57.0 115 38.3
TWI81G0365 Tripterygium wilfordii HOM05D006292 ORTHO05D006110 1.1e-06 57.0 117 39.3
vmacro00329 Vaccinium macrocarpon HOM05D006292 ORTHO05D006110 1.5e-06 56.6 117 39.3
Cc08_g02780 Coffea canephora HOM05D006292 ORTHO05D006110 1.9e-06 56.2 114 36.0
TWI60G0215 Tripterygium wilfordii HOM05D006292 ORTHO05D006110 1.9e-06 56.2 117 37.6
Prupe.5G036400 Prunus persica HOM05D006292 ORTHO05D006110 2.5e-06 55.8 115 37.4
PGR031G2877 Punica granatum HOM05D006292 ORTHO05D006110 2.5e-06 55.8 136 36.8
RcHm_v2.0_Chr7g0209741 Rosa chinensis HOM05D006292 ORTHO05D006110 2.5e-06 55.8 125 36.8
Sopen06g021400 Solanum pennellii HOM05D006292 ORTHO05D006110 2.5e-06 55.8 116 35.3
Aqoxy3G02346 Aquilegia oxysepala HOM05D006292 ORTHO05D006110 3.3e-06 55.5 114 36.8
Gohir.D09G193100 Gossypium hirsutum HOM05D006292 ORTHO05D006110 3.3e-06 55.5 127 34.6
CsaV3_3G001720 Cucumis sativus L. HOM05D006292 ORTHO05D006110 4.2e-06 55.1 120 34.2
Medtr5g030470 Medicago truncatula HOM05D006292 ORTHO05D006110 4.2e-06 55.1 112 40.2
Carub.0004s1692 Capsella rubella HOM05D006292 ORTHO05D006110 5.5e-06 54.7 127 33.9
Lj2g0014920 Lotus japonicus HOM05D006292 ORTHO05D006110 5.5e-06 54.7 121 38.0
Sed0013806 Sechium edule HOM05D011808 ORTHO05D006110 5.5e-06 54.7 100 35.0
arahy.Tifrunner.gnm1.ann1.92QZ6T Arachis hypogaea HOM05D006292 ORTHO05D006110 7.2e-06 54.3 114 36.8
EL10Ac5g12118 Beta vulgaris HOM05D006292 ORTHO05D006110 7.2e-06 54.3 124 34.7
Lalb_Chr09g0325661 Lupinus albus HOM05D006292 ORTHO05D006110 7.2e-06 54.3 108 38.0
Sed0015746 Sechium edule HOM05D006292 ORTHO05D006110 9.5e-06 53.9 113 34.5


User provided reference genes

Program Settings