Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g10980 Schrenkiella parvula HOM05D004872 ORTHO05D006050 4.0e-73 278.5 194 100.0
Sp4g26910 Schrenkiella parvula HOM05D004872 ORTHO05D006050 3.1e-62 242.3 148 85.8
Thhalv10019047m.g Eutrema salsugineum HOM05D004872 ORTHO05D006050 7.5e-56 221.1 155 75.5
AL4G43900 Arabidopsis lyrata HOM05D004872 ORTHO05D006050 4.3e-51 205.3 155 72.9
Carub.0004s2739 Capsella rubella HOM05D004872 ORTHO05D006050 4.7e-50 201.8 158 69.6
BcaB02g10512 Brassica carinata HOM05D004872 ORTHO05D006050 6.1e-50 201.4 165 68.5
CARHR140030 Cardamine hirsuta HOM05D004872 ORTHO05D006050 8.0e-50 201.1 158 70.3
A05p12650 Brassica napus HOM05D004872 ORTHO05D006050 4.0e-49 198.7 169 70.4
Aa31LG1G26360 Aethionema arabicum HOM05D004872 ORTHO05D006050 1.2e-48 197.2 160 68.1
BcaC02g12267 Brassica carinata HOM05D004872 ORTHO05D006050 3.4e-48 195.7 146 72.6
C04p05820 Brassica napus HOM05D004872 ORTHO05D006050 3.4e-48 195.7 146 72.6
BraA05t20203Z Brassica rapa HOM05D004872 ORTHO05D006050 3.4e-48 195.7 169 69.8
BraA05t19473Z Brassica rapa HOM05D004872 ORTHO05D006050 7.5e-48 194.5 146 71.9
BolC4t22211H Brassica oleracea HOM05D004872 ORTHO05D006050 2.2e-47 193.0 147 70.7
A05p04990 Brassica napus HOM05D004872 ORTHO05D006050 3.7e-47 192.2 160 67.5
THA.LOC104816943 Tarenaya hassleriana HOM05D004872 ORTHO05D006050 5.0e-44 181.8 158 64.6
BolC4t23202H Brassica oleracea HOM05D004872 ORTHO05D006050 8.6e-44 181.0 148 72.3
BcaB02g08868 Brassica carinata HOM05D004872 ORTHO05D006050 3.6e-42 175.6 149 66.4
AT2G44820 Arabidopsis thaliana HOM05D004872 ORTHO05D006050 1.4e-41 173.7 150 66.7
AL7G43510 Arabidopsis lyrata HOM05D004872 ORTHO05D006050 8.9e-41 171.0 159 61.0
BcaC02g11364 Brassica carinata HOM05D004872 ORTHO05D006050 4.1e-38 162.2 152 67.1
Cpa.g.sc34.184 Carica papaya HOM05D004872 ORTHO05D006050 5.4e-38 161.8 157 57.3
Aa31LG9G10050 Aethionema arabicum HOM05D004872 ORTHO05D006050 1.2e-37 160.6 167 58.1
Manes.09G068000 Manihot esculenta HOM05D004872 ORTHO05D006050 3.3e-35 152.5 146 56.2
GSVIVG01037356001 Vitis vinifera HOM05D004872 ORTHO05D006050 1.2e-34 150.6 151 55.6
Duzib150G1163 Durio zibethinus HOM05D004872 ORTHO05D006050 1.6e-34 150.2 156 54.5
Thecc.09G254600 Theobroma cacao HOM05D004872 ORTHO05D006050 1.6e-34 150.2 154 55.2
Atru.chr4.2930 Acer truncatum HOM05D004872 ORTHO05D006050 3.6e-34 149.1 157 52.9
Gohir.A09G108400 Gossypium hirsutum HOM05D004872 ORTHO05D006050 2.0e-32 143.3 156 52.6
TPR.G29301 Trifolium pratense HOM05D004872 ORTHO05D006050 2.0e-32 143.3 160 48.8
Gohir.D09G105300 Gossypium hirsutum HOM05D004872 ORTHO05D006050 2.6e-32 142.9 156 51.9
TPR.G26917 Trifolium pratense HOM05D004872 ORTHO05D006050 2.6e-32 142.9 160 48.1
Haze_23271 Corylus avellana HOM05D004500 ORTHO05D005775 1.3e-31 140.6 141 53.9
DCAR_030961 Daucus carota HOM05D004872 ORTHO05D006050 1.3e-31 140.6 161 53.4
Psat2g130480 Pisum sativum HOM05D004872 ORTHO05D006050 1.3e-31 140.6 157 49.0
Cfa009914 Carpinus fangiana HOM05D004872 ORTHO05D006050 2.2e-31 139.8 141 53.2
SGA_v2.0_scaffold144G35815 Striga asiatica HOM05D004872 ORTHO05D006050 2.9e-31 139.4 146 54.8
Nitab4.5_0002138g0010 Nicotiana tabacum HOM05D004872 ORTHO05D006050 3.7e-31 139.0 144 60.4
CiPaw.14G110500 Carya illinoinensis HOM05D004872 ORTHO05D006050 4.9e-31 138.7 133 52.6
Ciclev10006059m.g Citrus clementina HOM05D004872 ORTHO05D006050 4.9e-31 138.7 146 52.1
Dinv22205 Davidia involucrata HOM05D004872 ORTHO05D006050 4.9e-31 138.7 144 52.8
Sabra13G0065000 Salix brachista HOM05D004872 ORTHO05D006050 4.9e-31 138.7 166 47.6
Gorai.006G122300 Gossypium raimondii HOM05D004872 ORTHO05D006050 8.3e-31 137.9 157 51.6
Potri.013G075500 Populus trichocarpa HOM05D004872 ORTHO05D006050 8.3e-31 137.9 143 53.8
COL.COLO4_24934 Corchorus olitorius HOM05D004872 ORTHO05D006050 1.4e-30 137.1 148 52.0
Prupe.7G012800 Prunus persica HOM05D004872 ORTHO05D006050 1.9e-30 136.7 152 52.0
RcHm_v2.0_Chr5g0046151 Rosa chinensis HOM05D004872 ORTHO05D006050 3.2e-30 136.0 155 51.0
Peaxi162Scf00025g02826 Petunia axillaris HOM05D004872 ORTHO05D006050 5.4e-30 135.2 143 50.3
MSTRG.1742 Avicennia marina HOM05D004872 ORTHO05D006050 7.1e-30 134.8 145 51.7
Glyma.01G027700 Glycine max HOM05D004872 ORTHO05D006050 7.1e-30 134.8 153 49.0
PGSC0003DMG400003977 Solanum tuberosum HOM05D004872 ORTHO05D006050 7.1e-30 134.8 149 52.3
CAN.G1549.27 Capsicum annuum HOM05D004872 ORTHO05D006050 9.2e-30 134.4 148 54.1
QL01p016491 Quercus lobata HOM05D004872 ORTHO05D006050 1.2e-29 134.0 129 55.0
QL01p024148 Quercus lobata HOM05D004872 ORTHO05D006050 1.2e-29 134.0 129 55.0
Glyma.08G136100 Glycine max HOM05D004872 ORTHO05D006050 1.6e-29 133.7 153 48.4
CiPaw.13G148000 Carya illinoinensis HOM05D004872 ORTHO05D006050 2.1e-29 133.3 162 48.1
Cc11_g04500 Coffea canephora HOM05D004872 ORTHO05D006050 2.1e-29 133.3 125 57.6
Medtr7g096840 Medicago truncatula HOM05D004872 ORTHO05D006050 2.1e-29 133.3 147 49.7
Prupe.4G268800 Prunus persica HOM05D004872 ORTHO05D006050 2.1e-29 133.3 174 46.6
FAN25G2824 Fragaria x ananassa HOM05D004872 ORTHO05D006050 3.5e-29 132.5 155 50.3
Lj6g0009628 Lotus japonicus HOM05D004872 ORTHO05D006050 3.5e-29 132.5 136 53.7
Lj6g0013181 Lotus japonicus HOM05D004872 ORTHO05D006050 3.5e-29 132.5 136 53.7
TAR633G0253 Trochodendron aralioides HOM05D004872 ORTHO05D006050 1.0e-28 131.0 161 48.4
CANSAT54G2026 Cannabis sativa HOM05D004872 ORTHO05D006050 1.3e-28 130.6 154 48.1
Lsat_1_v5_gn_3_110040 Lactuca sativa HOM05D004872 ORTHO05D006050 1.7e-28 130.2 133 54.9
FvH4_3g25170 Fragaria vesca HOM05D004872 ORTHO05D006050 2.3e-28 129.8 155 49.7
HanXRQChr08g0217181 Helianthus annuus HOM05D004872 ORTHO05D006050 3.9e-28 129.0 157 49.0
Lsat_1_v5_gn_8_24740 Lactuca sativa HOM05D004872 ORTHO05D006050 3.9e-28 129.0 151 51.0
Sc11g0003110 Simmondsia chinensis HOM05D004872 ORTHO05D006050 3.9e-28 129.0 148 52.0
Nn8g39701 Nelumbo nucifera HOM05D004872 ORTHO05D006050 6.6e-28 128.3 165 49.1
Rhsim07G0167900 Rhododendron simsii HOM05D004872 ORTHO05D006050 8.6e-28 127.9 142 52.1
Nn2g15815 Nelumbo nucifera HOM05D004872 ORTHO05D006050 1.1e-27 127.5 152 48.7
arahy.Tifrunner.gnm1.ann1.U00P2R Arachis hypogaea HOM05D004872 ORTHO05D006050 1.5e-27 127.1 146 47.9
CSS0006428 Camellia sinensis var. sinensis HOM05D004872 ORTHO05D006050 1.9e-27 126.7 145 49.7
SalBow6G3136 Salvia bowleyana HOM05D004872 ORTHO05D006050 3.3e-27 125.9 145 51.0
Hma1.2p1_0299F.1_g117840 Hydrangea macrophylla HOM05D004872 ORTHO05D006050 4.3e-27 125.6 160 46.9
Manes.08G069866 Manihot esculenta HOM05D004872 ORTHO05D006050 7.3e-27 124.8 153 47.7
ECA233G5422 Erigeron canadensis HOM05D004872 ORTHO05D006050 9.5e-27 124.4 121 56.2
arahy.Tifrunner.gnm1.ann1.EX2XSN Arachis hypogaea HOM05D004872 ORTHO05D006050 1.2e-26 124.0 146 46.6
Eucgr.J02277 Eucalyptus grandis HOM05D004872 ORTHO05D006050 2.1e-26 123.2 156 48.7
Phvul.002G255800 Phaseolus vulgaris HOM05D004872 ORTHO05D006050 3.6e-26 122.5 158 44.9
SalBow1G8122 Salvia bowleyana HOM05D004872 ORTHO05D006050 4.7e-26 122.1 140 50.7
MELO3C014544.2 Cucumis melo HOM05D004872 ORTHO05D006050 6.2e-26 121.7 146 47.3
CsaV3_6G038800 Cucumis sativus L. HOM05D004872 ORTHO05D006050 6.2e-26 121.7 146 47.3
Solyc11g005570.2 Solanum lycopersicum HOM05D004872 ORTHO05D006050 6.2e-26 121.7 149 50.3
Sopen11g001540 Solanum pennellii HOM05D004872 ORTHO05D006050 6.2e-26 121.7 149 50.3
VMungo0251G0214 Vigna mungo HOM05D004872 ORTHO05D006050 8.1e-26 121.3 148 44.6
ClCG02G022680 Citrullus lanatus HOM05D004872 ORTHO05D006050 1.1e-25 120.9 146 47.9
Nitab4.5_0001582g0110 Nicotiana tabacum HOM05D004872 ORTHO05D006050 4.0e-25 119.0 126 65.1
TWI31G0308 Tripterygium wilfordii HOM05D004872 ORTHO05D006050 4.0e-25 119.0 167 45.5
FAN11G3172 Fragaria x ananassa HOM05D004872 ORTHO05D006050 5.2e-25 118.6 123 54.5
Lalb_Chr04g0249071 Lupinus albus HOM05D004872 ORTHO05D006050 5.2e-25 118.6 163 45.4
MD12G1010900 Malus domestica HOM05D004872 ORTHO05D006050 5.2e-25 118.6 155 45.2
HanXRQChr10g0315331 Helianthus annuus HOM05D004872 ORTHO05D006050 6.8e-25 118.2 157 45.9
Oeu026038.1 Olea europaea HOM05D004872 ORTHO05D006050 8.9e-25 117.9 121 57.9
PSO017G2452 Papaver somniferum HOM05D004872 ORTHO05D006050 8.9e-25 117.9 115 54.8
PSO017G5814 Papaver somniferum HOM05D004872 ORTHO05D006050 8.9e-25 117.9 115 54.8
PSO529G0002 Papaver somniferum HOM05D004872 ORTHO05D006050 8.9e-25 117.9 115 54.8
PSO541G2017 Papaver somniferum HOM05D004872 ORTHO05D006050 8.9e-25 117.9 115 54.8
PSO591G0356 Papaver somniferum HOM05D004872 ORTHO05D006050 8.9e-25 117.9 115 54.8
PSO705G0001 Papaver somniferum HOM05D004872 ORTHO05D006050 8.9e-25 117.9 115 54.8
Oeu040527.1 Olea europaea HOM05D004872 ORTHO05D006050 1.2e-24 117.5 121 57.0
PSO591G0248 Papaver somniferum HOM05D004872 ORTHO05D006050 1.5e-24 117.1 115 54.8
Actinidia06989 Actinidia chinensis HOM05D004500 ORTHO05D005775 3.4e-24 115.9 118 51.7
CDE05G2894 Ceratophyllum demersum HOM05D004872 ORTHO05D006050 4.4e-24 115.5 142 45.8
AUR62000220 Chenopodium quinoa HOM05D004872 ORTHO05D006050 4.4e-24 115.5 135 50.4
Migut.E01400 Erythranthe guttata HOM05D004872 ORTHO05D006050 2.9e-23 112.8 143 46.9
EL10Ac4g10086 Beta vulgaris HOM05D004872 ORTHO05D006050 3.8e-23 112.5 118 55.1
C04p16540 Brassica napus HOM05D004872 ORTHO05D006050 4.9e-23 112.1 180 47.8
MBI17_g09534_MAGBIO Magnolia biondii HOM05D004872 ORTHO05D006050 8.4e-23 111.3 159 43.4
arahy.Tifrunner.gnm1.ann1.K1U5S9 Arachis hypogaea HOM05D004872 ORTHO05D006050 1.1e-22 110.9 170 40.0
AUR62006565 Chenopodium quinoa HOM05D004872 ORTHO05D006050 1.1e-22 110.9 128 50.0
Sed0007255 Sechium edule HOM05D004872 ORTHO05D006050 1.1e-22 110.9 147 45.6
ECA236G0590 Erigeron canadensis HOM05D004872 ORTHO05D006050 2.4e-22 109.8 117 53.8
arahy.Tifrunner.gnm1.ann1.R4J47E Arachis hypogaea HOM05D004872 ORTHO05D006050 1.2e-21 107.5 125 48.0
Hund07423 Selenicereus undatus HOM05D004872 ORTHO05D006050 2.1e-21 106.7 123 50.4
Ah.04g159640 Amaranthus hybridus HOM05D004872 ORTHO05D006050 3.5e-21 105.9 152 46.1
Os01g0224500 Oryza sativa ssp. japonica HOM05D004872 ORTHO05D006050 7.8e-21 104.8 164 40.9
Aqoxy1G01418 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 2.3e-20 103.2 144 45.8
Aqoxy72s001 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 1.5e-19 100.5 144 45.1
Aqoxy2G00467 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 7.3e-19 98.2 144 43.8
vmacro05825 Vaccinium macrocarpon HOM05D004872 ORTHO05D006050 7.3e-19 98.2 163 42.3
CiPaw.13G148200 Carya illinoinensis HOM05D004872 ORTHO05D006050 2.1e-18 96.7 128 48.4
Aqoxy7G03169 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 2.8e-18 96.3 144 41.7
Zm00001eb192850 Zea mays HOM05D004872 ORTHO05D006050 2.8e-18 96.3 160 38.8
HPP92_015870 Vanilla planifolia HOM05D004872 ORTHO05D006050 3.1e-17 92.8 157 37.6
ATR0665G028 Amborella trichopoda HOM05D004872 ORTHO05D006050 1.2e-16 90.9 126 39.7
Sc11g0003120 Simmondsia chinensis HOM05D004872 ORTHO05D006050 3.8e-15 85.9 102 52.9
Zm00001eb281550 Zea mays HOM05D004872 ORTHO05D006050 4.6e-13 79.0 125 41.6
PGR102G1802 Punica granatum HOM05D004872 ORTHO05D006050 6.0e-13 78.6 142 35.2
arahy.Tifrunner.gnm1.ann1.X2Q8UN Arachis hypogaea HOM05D004872 ORTHO05D006050 4.3e-11 72.4 115 38.3
AL225U10020 Arabidopsis lyrata HOM05D004872 ORTHO05D006050 2.1e-10 70.1 72 52.8
Mapoly0036s0026 Marchantia polymorpha HOM05D004872 ORTHO05D006050 3.4e-08 62.8 169 32.0
TPR.G14060 Trifolium pratense HOM05D004872 ORTHO05D006050 3.4e-08 62.8 120 40.0
Zm00001eb416880 Zea mays HOM05D004872 ORTHO05D006050 3.8e-07 59.3 104 39.4
Atru.chr1.3406 Acer truncatum HOM05D004872 ORTHO05D006050 2.4e-06 56.6 101 36.6
SEGI_13451 Sequoiadendron giganteum HOM05D004872 ORTHO05D006050 2.4e-06 56.6 135 28.9


User provided reference genes

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