Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g10500 Schrenkiella parvula HOM05D006140 ORTHO05D007834 0.0e+00 1298.1 706 100.0
BcaC06g31534 Brassica carinata HOM05D006140 ORTHO05D007834 6.9e-293 1010.4 706 80.2
BcaC06g34418 Brassica carinata HOM05D006140 ORTHO05D007834 4.2e-282 974.5 707 77.8
C07p28720 Brassica napus HOM05D006140 ORTHO05D007834 4.2e-282 974.5 707 77.8
BolC7t43410H Brassica oleracea HOM05D006140 ORTHO05D007834 4.2e-282 974.5 707 77.8
A06p46490 Brassica napus HOM05D006140 ORTHO05D007834 2.8e-278 961.8 719 77.1
BraA06t27522Z Brassica rapa HOM05D006140 ORTHO05D007834 3.1e-277 958.4 719 76.8
Aa31LG9G7440 Aethionema arabicum HOM05D006140 ORTHO05D007834 1.6e-252 876.3 699 69.5
Thhalv10000816m.g Eutrema salsugineum HOM05D006140 ORTHO05D007834 3.3e-250 868.6 706 72.0
AT5G45610 Arabidopsis thaliana HOM05D006140 ORTHO05D007834 1.2e-239 833.6 686 69.8
AL8G13070 Arabidopsis lyrata HOM05D006140 ORTHO05D007834 7.3e-234 814.3 692 67.8
THA.LOC104798454 Tarenaya hassleriana HOM05D006140 ORTHO05D007834 5.1e-219 765.0 709 61.9
Carub.0008s0241 Capsella rubella HOM05D006140 ORTHO05D007834 9.0e-208 727.6 654 65.9
CARHR176410 Cardamine hirsuta HOM05D006140 ORTHO05D007834 6.0e-196 688.3 497 76.1
Gohir.A12G205000 Gossypium hirsutum HOM05D006140 ORTHO05D007834 5.0e-118 429.5 727 40.9
Duzib205G1045 Durio zibethinus HOM05D006140 ORTHO05D007834 4.0e-115 419.9 647 43.9
Dinv06909 Davidia involucrata HOM05D006140 ORTHO05D007834 4.9e-113 412.9 744 39.8
Gohir.D12G207400 Gossypium hirsutum HOM05D006140 ORTHO05D007834 1.9e-109 401.0 742 40.4
Gorai.008G222800 Gossypium raimondii HOM05D006140 ORTHO05D007834 3.3e-109 400.2 738 39.3
Prupe.5G025700 Prunus persica HOM05D006140 ORTHO05D007834 6.2e-108 396.0 752 37.6
TWI60G0968 Tripterygium wilfordii HOM05D006140 ORTHO05D007834 1.2e-106 391.7 760 39.5
MD06G1024600 Malus domestica HOM05D006140 ORTHO05D007834 7.6e-106 389.0 666 40.4
Atru.chr6.1557 Acer truncatum HOM05D006140 ORTHO05D007834 2.1e-103 380.9 738 37.3
FAN18G2089 Fragaria x ananassa HOM05D006140 ORTHO05D007834 6.0e-103 379.4 669 39.6
Actinidia14773 Actinidia chinensis HOM05D006140 ORTHO05D007834 2.3e-102 377.5 745 37.6
FvH4_5g23380 Fragaria vesca HOM05D006140 ORTHO05D007834 3.3e-101 373.6 650 39.8
TAR629G0094 Trochodendron aralioides HOM05D006140 ORTHO05D007834 4.3e-101 373.2 739 36.5
FAN18G2328 Fragaria x ananassa HOM05D006140 ORTHO05D007834 8.1e-100 369.0 661 39.0
CiPaw.11G100200 Carya illinoinensis HOM05D006140 ORTHO05D007834 2.4e-99 367.5 735 38.1
VMungo1215G1486 Vigna mungo HOM05D006140 ORTHO05D007834 2.6e-98 364.0 655 40.0
Potri.001G134800 Populus trichocarpa HOM05D006140 ORTHO05D007834 9.9e-98 362.1 745 37.6
Sc22g0001920 Simmondsia chinensis HOM05D006140 ORTHO05D007834 2.9e-97 360.5 735 36.1
Thecc.03G312700 Theobroma cacao HOM05D006140 ORTHO05D007834 3.8e-97 360.1 718 39.1
Glyma.09G210300 Glycine max HOM05D006140 ORTHO05D007834 6.4e-97 359.4 665 38.5
Manes.17G016001 Manihot esculenta HOM05D006140 ORTHO05D007834 7.8e-95 352.4 729 37.3
RcHm_v2.0_Chr7g0212401 Rosa chinensis HOM05D006140 ORTHO05D007834 1.7e-94 351.3 681 38.9
Glyma.01G010800 Glycine max HOM05D006140 ORTHO05D007834 3.0e-94 350.5 667 38.5
Cfa012537 Carpinus fangiana HOM05D006140 ORTHO05D007834 6.6e-94 349.4 726 38.0
FAN08G2467 Fragaria x ananassa HOM05D006140 ORTHO05D007834 6.6e-94 349.4 668 38.6
Phvul.002G133700 Phaseolus vulgaris HOM05D006140 ORTHO05D007834 5.6e-93 346.3 662 38.4
Nn1g01908 Nelumbo nucifera HOM05D006140 ORTHO05D007834 7.3e-93 345.9 671 37.9
PGR042G2343 Punica granatum HOM05D006140 ORTHO05D007834 7.3e-93 345.9 655 37.9
Sed0012782 Sechium edule HOM05D006140 ORTHO05D007834 9.6e-93 345.5 748 36.0
Lalb_Chr09g0325351 Lupinus albus HOM05D006140 ORTHO05D007834 8.1e-92 342.4 650 38.8
Potri.003G098700 Populus trichocarpa HOM05D006140 ORTHO05D007834 1.1e-91 342.0 738 38.6
arahy.Tifrunner.gnm1.ann1.B53Y8P Arachis hypogaea HOM05D006140 ORTHO05D007834 1.4e-91 341.7 680 37.6
arahy.Tifrunner.gnm1.ann1.HKBA6R Arachis hypogaea HOM05D006140 ORTHO05D007834 1.4e-91 341.7 680 37.6
QL12p000198 Quercus lobata HOM05D006140 ORTHO05D007834 2.0e-90 337.8 724 36.2
CsaV3_3G048750 Cucumis sativus L. HOM05D006140 ORTHO05D007834 3.4e-90 337.0 735 35.6
HanXRQChr15g0469721 Helianthus annuus HOM05D006140 ORTHO05D007834 6.4e-89 332.8 631 40.1
ClCG09G011510 Citrullus lanatus HOM05D006140 ORTHO05D007834 1.4e-88 331.6 748 35.7
CSS0008724 Camellia sinensis var. sinensis HOM05D006140 ORTHO05D007834 1.7e-86 324.7 673 37.3
CANSAT21G0745 Cannabis sativa HOM05D006140 ORTHO05D007834 5.1e-86 323.2 678 37.9
DCAR_008203 Daucus carota HOM05D006140 ORTHO05D007834 6.6e-86 322.8 657 36.4
Sopen08g024830 Solanum pennellii HOM05D006140 ORTHO05D007834 1.1e-85 322.0 729 33.3
Lj2g0005195 Lotus japonicus HOM05D006140 ORTHO05D007834 2.5e-85 320.9 648 37.5
Migut.A00588 Erythranthe guttata HOM05D006140 ORTHO05D007834 9.6e-85 318.9 728 33.8
Lsat_1_v5_gn_6_17700 Lactuca sativa HOM05D006140 ORTHO05D007834 3.1e-83 313.9 797 35.3
ECA233G4025 Erigeron canadensis HOM05D006140 ORTHO05D007834 6.9e-83 312.8 751 35.3
AUR62027322 Chenopodium quinoa HOM05D006140 ORTHO05D007834 2.0e-82 311.2 650 36.2
Psat2g140200 Pisum sativum HOM05D006140 ORTHO05D007834 2.9e-81 307.4 716 35.6
FAN04G1734 Fragaria x ananassa HOM05D006140 ORTHO05D007834 4.9e-81 306.6 645 37.1
Solyc08g076190.3 Solanum lycopersicum HOM05D006140 ORTHO05D007834 6.4e-81 306.2 737 32.8
Medtr5g027920 Medicago truncatula HOM05D006140 ORTHO05D007834 5.5e-80 303.1 673 36.0
Ca_25157_v3 Cicer arietinum L. HOM05D006140 ORTHO05D007834 1.2e-79 302.0 682 35.0
Sabra01G0104200 Salix brachista HOM05D006140 ORTHO05D007834 2.7e-79 300.8 568 37.9
SGA_v2.0_scaffold89G27431 Striga asiatica HOM05D006140 ORTHO05D007834 2.7e-79 300.8 723 34.4
TPR.G19464 Trifolium pratense HOM05D006140 ORTHO05D007834 5.1e-78 296.6 677 34.7
Nitab4.5_0000543g0200 Nicotiana tabacum HOM05D006140 ORTHO05D007834 2.1e-76 291.2 679 34.6
vmacro14212 Vaccinium macrocarpon HOM05D006140 ORTHO05D007834 6.2e-76 289.7 938 30.1
Peaxi162Scf00879g00021 Petunia axillaris HOM05D006140 ORTHO05D007834 2.4e-75 287.7 718 35.0
Rhsim07G0134400 Rhododendron simsii HOM05D006140 ORTHO05D007834 2.4e-75 287.7 645 33.6
EL10Ac5g11927 Beta vulgaris HOM05D006140 ORTHO05D007834 6.9e-75 286.2 697 35.0
Hund11103 Selenicereus undatus HOM05D006140 ORTHO05D007834 6.9e-75 286.2 645 34.6
PSO063G5188 Papaver somniferum HOM05D006140 ORTHO05D007834 6.5e-73 279.6 802 31.9
PSO782G1224 Papaver somniferum HOM05D006140 ORTHO05D007834 3.2e-72 277.3 807 31.6
Nitab4.5_0003023g0010 Nicotiana tabacum HOM05D006140 ORTHO05D007834 1.2e-71 275.4 658 34.2
AUR62007410 Chenopodium quinoa HOM05D006140 ORTHO05D007834 7.9e-71 272.7 596 34.1
Ciclev10003207m.g Citrus clementina HOM05D006140 ORTHO05D007834 2.3e-70 271.2 313 53.7
Aqoxy3G02157 Aquilegia oxysepala HOM05D006140 ORTHO05D007834 1.9e-69 268.1 638 32.8
GSVIVG01012994001 Vitis vinifera HOM05D006140 ORTHO05D007834 1.4e-67 261.9 285 54.7
SalBow1G1748 Salvia bowleyana HOM05D006140 ORTHO05D007834 1.5e-66 258.5 730 31.5
MELO3C030376.2 Cucumis melo HOM05D006140 ORTHO05D007834 3.4e-66 257.3 795 31.9
ATR0829G104 Amborella trichopoda HOM05D006140 ORTHO05D007834 6.3e-60 236.5 500 34.4
Cc00_g09430 Coffea canephora HOM05D006140 ORTHO05D007834 2.5e-56 224.6 276 44.9
PGSC0003DMG401009319 Solanum tuberosum HOM05D006140 ORTHO05D007834 2.2e-52 211.5 275 43.6
Ah.12g055990 Amaranthus hybridus HOM05D006140 ORTHO05D007834 1.2e-50 205.7 644 32.0
HPP92_020808 Vanilla planifolia HOM05D006140 ORTHO05D007834 7.7e-50 203.0 789 27.6
Lj3g0005794 Lotus japonicus HOM05D006140 ORTHO05D007834 8.8e-46 189.5 226 49.6
Zm00001eb208860 Zea mays HOM05D006140 ORTHO05D007834 7.0e-43 179.9 506 30.2
Eucgr.E01307 Eucalyptus grandis HOM05D006140 ORTHO05D007834 4.1e-35 154.1 414 32.9
Haze_08125 Corylus avellana HOM05D006140 ORTHO05D007834 6.5e-33 146.7 152 54.6
Lj6g0014120 Lotus japonicus HOM05D006140 ORTHO05D007834 4.8e-28 130.6 151 51.0
MBI04_g36019_MAGBIO Magnolia biondii HOM05D006140 ORTHO05D007834 7.7e-26 123.2 448 27.9
COL.COLO4_16905 Corchorus olitorius HOM05D006140 ORTHO05D007834 1.2e-23 115.9 314 32.8
Hma1.2p1_1460F.1_g284980 Hydrangea macrophylla HOM05D006140 ORTHO05D007834 1.2e-23 115.9 150 48.7
SHI20257 Sapria himalayana HOM05D006140 ORTHO05D007834 2.3e-22 111.7 163 46.0
unitig_32.g10971 Utricularia gibba HOM05D006140 ORTHO05D007834 2.3e-22 111.7 199 37.7
SEGI_17370 Sequoiadendron giganteum HOM05D006140 ORTHO05D007834 4.0e-22 110.9 698 23.1
MBI04_g20983_MAGBIO Magnolia biondii HOM05D006140 ORTHO05D007834 7.5e-21 106.7 136 46.3
PGSC0003DMG402009319 Solanum tuberosum HOM05D006140 ORTHO05D007834 1.3e-20 105.9 355 30.1
CDE02G1222 Ceratophyllum demersum HOM05D006140 ORTHO05D007834 8.3e-20 103.2 155 42.6
Cc00_g09420 Coffea canephora HOM05D006140 ORTHO05D007834 2.9e-17 94.7 315 31.1
Ciclev10003621m.g Citrus clementina HOM05D006140 ORTHO05D007834 4.3e-16 90.9 248 33.5
Pp3c4_25200 Physcomitrium patens HOM05D006140 ORTHO05D007834 4.7e-15 87.4 425 24.0
SHI20259 Sapria himalayana HOM05D006140 ORTHO05D007834 1.7e-12 79.0 250 31.2
Actinidia24581 Actinidia chinensis HOM05D006140 ORTHO05D007834 4.9e-12 77.4 287 28.6
Cpa.g.sc16.12 Carica papaya HOM05D006140 ORTHO05D007834 2.4e-11 75.1 122 36.1
CDE02G0505 Ceratophyllum demersum HOM05D006140 ORTHO05D007834 3.5e-10 71.2 347 25.4
Oeu063929.1 Olea europaea HOM05D006140 ORTHO05D007834 2.1e-07 62.0 53 58.5
COL.COLO4_16906 Corchorus olitorius HOM05D006140 ORTHO05D007834 5.2e-06 57.4 111 38.7


User provided reference genes

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