Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g10480 Schrenkiella parvula HOM05D006875 ORTHO05D008416 5.7e-92 340.9 170 100.0
Thhalv10001052m.g Eutrema salsugineum HOM05D006875 ORTHO05D008416 1.3e-80 303.1 174 88.5
BolC7t43404H Brassica oleracea HOM05D006875 ORTHO05D008416 5.7e-76 287.7 171 85.4
Carub.0008s0244 Capsella rubella HOM05D006875 ORTHO05D008416 9.7e-76 287.0 174 84.5
A06p46520 Brassica napus HOM05D006875 ORTHO05D008416 1.7e-75 286.2 172 84.9
BraA06t27526Z Brassica rapa HOM05D006875 ORTHO05D008416 1.7e-75 286.2 172 84.9
BcaC06g31539 Brassica carinata HOM05D006875 ORTHO05D008416 1.1e-74 283.5 171 84.8
AL8G13090 Arabidopsis lyrata HOM05D006875 ORTHO05D008416 1.8e-74 282.7 174 84.5
AT5G45590 Arabidopsis thaliana HOM05D006875 ORTHO05D008416 7.7e-73 277.3 177 81.9
C02p46480 Brassica napus HOM05D006875 ORTHO05D008416 3.8e-72 275.0 171 83.6
BcaC03g16779 Brassica carinata HOM05D006875 ORTHO05D008416 5.0e-72 274.6 171 83.6
BcaC06g34424 Brassica carinata HOM05D006875 ORTHO05D008416 5.0e-72 274.6 171 81.9
C07p28660 Brassica napus HOM05D006875 ORTHO05D008416 5.0e-72 274.6 171 81.9
BolC2t10706H Brassica oleracea HOM05D006875 ORTHO05D008416 5.0e-72 274.6 171 83.6
Aa31LG9G7450 Aethionema arabicum HOM05D006875 ORTHO05D008416 5.5e-71 271.2 172 82.0
CARHR176440 Cardamine hirsuta HOM05D006875 ORTHO05D008416 5.5e-71 271.2 172 80.8
THA.LOC104806179 Tarenaya hassleriana HOM05D006875 ORTHO05D008416 4.2e-63 245.0 178 73.6
A02p29280 Brassica napus HOM05D006875 ORTHO05D008416 1.5e-52 209.9 170 68.2
BraA02t07958Z Brassica rapa HOM05D006875 ORTHO05D008416 1.5e-52 209.9 170 68.2
Actinidia18144 Actinidia chinensis HOM05D006875 ORTHO05D008416 8.6e-40 167.5 178 56.2
Nitab4.5_0000109g0180 Nicotiana tabacum HOM05D006875 ORTHO05D008416 2.1e-38 162.9 170 55.9
Actinidia14761 Actinidia chinensis HOM05D006875 ORTHO05D008416 2.8e-38 162.5 178 55.1
Solyc06g066190.3 Solanum lycopersicum HOM05D006875 ORTHO05D008416 1.4e-37 160.2 171 55.6
Sopen06g024670 Solanum pennellii HOM05D006875 ORTHO05D008416 1.8e-37 159.8 171 55.6
PGSC0003DMG400020470 Solanum tuberosum HOM05D006875 ORTHO05D008416 6.8e-37 157.9 173 54.9
CSS0027486 Camellia sinensis var. sinensis HOM05D006875 ORTHO05D008416 2.6e-36 156.0 185 50.8
Duzib205G1866 Durio zibethinus HOM05D006875 ORTHO05D008416 2.6e-36 156.0 171 53.8
Peaxi162Scf00185g01627 Petunia axillaris HOM05D006875 ORTHO05D008416 5.8e-36 154.8 174 56.3
CiPaw.12G070200 Carya illinoinensis HOM05D006875 ORTHO05D008416 7.5e-36 154.5 184 51.6
Duzib068G0693 Durio zibethinus HOM05D006875 ORTHO05D008416 1.3e-35 153.7 169 51.5
Nitab4.5_0005761g0030 Nicotiana tabacum HOM05D006875 ORTHO05D008416 4.9e-35 151.8 186 51.1
Potri.001G133600 Populus trichocarpa HOM05D006875 ORTHO05D008416 1.4e-34 150.2 178 52.8
Ca_25148_v3 Cicer arietinum L. HOM05D006875 ORTHO05D008416 1.9e-34 149.8 171 52.0
Prupe.5G024300 Prunus persica HOM05D006875 ORTHO05D008416 2.4e-34 149.4 174 52.9
GSVIVG01011544001 Vitis vinifera HOM05D006875 ORTHO05D008416 2.4e-34 149.4 143 57.3
Lalb_Chr05g0215561 Lupinus albus HOM05D006875 ORTHO05D008416 5.4e-34 148.3 170 51.2
RcHm_v2.0_Chr7g0212891 Rosa chinensis HOM05D006875 ORTHO05D008416 5.4e-34 148.3 174 52.3
TAR629G1490 Trochodendron aralioides HOM05D006875 ORTHO05D008416 1.2e-33 147.1 173 50.9
Dinv29039 Davidia involucrata HOM05D006875 ORTHO05D008416 1.6e-33 146.7 171 50.9
Gohir.D08G173100 Gossypium hirsutum HOM05D006875 ORTHO05D008416 2.7e-33 146.0 172 50.6
TPR.G9090 Trifolium pratense HOM05D006875 ORTHO05D008416 6.0e-33 144.8 170 50.0
Lalb_Chr16g0380861 Lupinus albus HOM05D006875 ORTHO05D008416 1.3e-32 143.7 170 51.8
EL10Ac5g11986 Beta vulgaris HOM05D006875 ORTHO05D008416 2.3e-32 142.9 180 49.4
Cc08_g04080 Coffea canephora HOM05D006875 ORTHO05D008416 2.3e-32 142.9 172 51.7
arahy.Tifrunner.gnm1.ann1.7H2E39 Arachis hypogaea HOM05D006875 ORTHO05D008416 6.6e-32 141.4 185 49.2
arahy.Tifrunner.gnm1.ann1.J2I619 Arachis hypogaea HOM05D006875 ORTHO05D008416 6.6e-32 141.4 185 49.2
Hund14386 Selenicereus undatus HOM05D006875 ORTHO05D008416 6.6e-32 141.4 185 48.1
Ah.12g055650 Amaranthus hybridus HOM05D006875 ORTHO05D008416 1.1e-31 140.6 176 50.0
Sabra01G0103300 Salix brachista HOM05D006875 ORTHO05D008416 1.1e-31 140.6 220 44.5
Migut.E01333 Erythranthe guttata HOM05D006875 ORTHO05D008416 1.9e-31 139.8 174 51.1
Sc01g0006090 Simmondsia chinensis HOM05D006875 ORTHO05D008416 3.3e-31 139.0 171 49.7
Sed0011128 Sechium edule HOM05D006875 ORTHO05D008416 4.3e-31 138.7 177 48.6
Nn1g01960 Nelumbo nucifera HOM05D006875 ORTHO05D008416 9.5e-31 137.5 177 49.7
Cfa012555 Carpinus fangiana HOM05D006875 ORTHO05D008416 3.6e-30 135.6 172 48.3
Medtr5g027470 Medicago truncatula HOM05D006875 ORTHO05D008416 4.7e-30 135.2 173 48.6
CsaV3_3G030390 Cucumis sativus L. HOM05D006875 ORTHO05D008416 8.1e-30 134.4 173 48.0
Glyma.01G009800 Glycine max HOM05D006875 ORTHO05D008416 1.1e-29 134.0 167 49.7
Oeu044464.1 Olea europaea HOM05D006875 ORTHO05D008416 1.1e-29 134.0 96 72.9
MSTRG.13901 Avicennia marina HOM05D006875 ORTHO05D008416 1.8e-29 133.3 182 47.8
Lj2g0021598 Lotus japonicus HOM05D006875 ORTHO05D008416 1.8e-29 133.3 171 50.3
Phvul.002G132700 Phaseolus vulgaris HOM05D006875 ORTHO05D008416 1.8e-29 133.3 169 52.1
Potri.003G099900 Populus trichocarpa HOM05D006875 ORTHO05D008416 1.8e-29 133.3 181 49.2
Glyma.09G211300 Glycine max HOM05D006875 ORTHO05D008416 4.0e-29 132.1 167 50.3
SalBow4G1271 Salvia bowleyana HOM05D006875 ORTHO05D008416 4.0e-29 132.1 170 51.8
Eucgr.D02619 Eucalyptus grandis HOM05D006875 ORTHO05D008416 8.9e-29 131.0 177 49.2
MELO3C022766.2 Cucumis melo HOM05D006875 ORTHO05D008416 3.4e-28 129.0 175 46.3
SGA_v2.0_scaffold144G35866 Striga asiatica HOM05D006875 ORTHO05D008416 3.4e-28 129.0 98 69.4
VMungo1215G2146 Vigna mungo HOM05D006875 ORTHO05D008416 4.4e-28 128.6 167 49.7
HanXRQChr16g0510981 Helianthus annuus HOM05D006875 ORTHO05D008416 7.6e-28 127.9 177 48.0
CDE05G0418 Ceratophyllum demersum HOM05D006875 ORTHO05D008416 3.8e-27 125.6 114 58.8
unitig_0.g2213 Utricularia gibba HOM05D006875 ORTHO05D008416 1.1e-26 124.0 92 69.6
Ciclev10002495m.g Citrus clementina HOM05D006875 ORTHO05D008416 3.2e-26 122.5 177 45.8
Cpa.g.c33846 Carica papaya HOM05D006875 ORTHO05D008416 4.1e-26 122.1 142 51.4
Atru.chr6.1576 Acer truncatum HOM05D006875 ORTHO05D008416 7.1e-26 121.3 181 44.2
Thecc.03G314400 Theobroma cacao HOM05D006875 ORTHO05D008416 9.2e-26 120.9 172 44.8
FAN13G1224 Fragaria x ananassa HOM05D006875 ORTHO05D008416 1.2e-25 120.6 171 48.0
TWI23G0606 Tripterygium wilfordii HOM05D006875 ORTHO05D008416 1.2e-25 120.6 179 44.7
FAN08G3065 Fragaria x ananassa HOM05D006875 ORTHO05D008416 2.7e-25 119.4 171 48.0
Gohir.A08G152100 Gossypium hirsutum HOM05D006875 ORTHO05D008416 3.5e-25 119.0 173 45.7
FAN04G1681 Fragaria x ananassa HOM05D006875 ORTHO05D008416 4.6e-25 118.6 171 47.4
Manes.17G011100 Manihot esculenta HOM05D006875 ORTHO05D008416 1.0e-24 117.5 184 44.6
FvH4_5g23590 Fragaria vesca HOM05D006875 ORTHO05D008416 1.7e-24 116.7 170 47.1
FAN18G3946 Fragaria x ananassa HOM05D006875 ORTHO05D008416 1.7e-24 116.7 170 47.1
CANSAT21G2454 Cannabis sativa HOM05D006875 ORTHO05D008416 3.9e-24 115.5 172 43.6
FAN18G3512 Fragaria x ananassa HOM05D006875 ORTHO05D008416 6.6e-24 114.8 170 46.5
Aqoxy3G02082 Aquilegia oxysepala HOM05D006875 ORTHO05D008416 1.1e-23 114.0 174 47.7
Hma1.2p1_0979F.1_g243510 Hydrangea macrophylla HOM05D006875 ORTHO05D008416 7.3e-23 111.3 177 43.5
Os10g0579500 Oryza sativa ssp. japonica HOM05D006875 ORTHO05D008416 2.1e-22 109.8 95 63.2
PSO782G2435 Papaver somniferum HOM05D006875 ORTHO05D008416 1.1e-21 107.5 169 43.8
Zm00001eb025290 Zea mays HOM05D006875 ORTHO05D008416 2.4e-21 106.3 98 59.2
PSO063G1678 Papaver somniferum HOM05D006875 ORTHO05D008416 3.1e-21 105.9 168 42.3
Gorai.004G180500 Gossypium raimondii HOM05D006875 ORTHO05D008416 8.9e-21 104.4 166 43.4
COL.COLO4_16883 Corchorus olitorius HOM05D006875 ORTHO05D008416 1.2e-20 104.0 55 90.9
MD00G1000200 Malus domestica HOM05D006875 ORTHO05D008416 4.4e-20 102.1 176 40.9
Sabra03G0067900 Salix brachista HOM05D006875 ORTHO05D008416 9.9e-20 100.9 93 58.1
vmacro14218 Vaccinium macrocarpon HOM05D006875 ORTHO05D008416 2.2e-19 99.8 251 35.1
Psat2g139680 Pisum sativum HOM05D006875 ORTHO05D008416 1.1e-18 97.4 144 41.7
HPP92_025490 Vanilla planifolia HOM05D006875 ORTHO05D008416 5.4e-18 95.1 72 70.8
ClCG07G002300 Citrullus lanatus HOM05D006875 ORTHO05D008416 1.2e-17 94.0 143 42.7
Haze_08105 Corylus avellana HOM05D006875 ORTHO05D008416 8.7e-16 87.8 66 63.6
Haze_08111 Corylus avellana HOM05D006875 ORTHO05D008416 1.9e-15 86.7 144 39.6
AagrBONN_evm.TU.Sc2ySwM_362.254 Anthoceros agrestis HOM05D006875 ORTHO05D008416 3.3e-15 85.9 72 61.1
Pp3c9_12060 Physcomitrium patens HOM05D006875 ORTHO05D008416 4.3e-15 85.5 67 61.2
Mapoly0025s0027 Marchantia polymorpha HOM05D006875 ORTHO05D008416 5.6e-15 85.1 160 38.1
Rhsim07G0136500 Rhododendron simsii HOM05D006875 ORTHO05D008416 8.1e-14 81.3 151 40.4
PGR031G1815 Punica granatum HOM05D006875 ORTHO05D008416 6.9e-13 78.2 138 41.3
QL12p000430 Quercus lobata HOM05D006875 ORTHO05D008416 4.5e-12 75.5 148 37.8
ATR0829G201 Amborella trichopoda HOM05D006875 ORTHO05D008416 7.6e-12 74.7 136 39.7
ECA233G1303 Erigeron canadensis HOM05D000321 ORTHO05D000204 7.6e-12 74.7 67 56.7
CDE11G0569 Ceratophyllum demersum HOM05D006875 ORTHO05D008416 2.9e-11 72.8 153 37.3
RcHm_v2.0_Chr1g0382651 Rosa chinensis HOM05D006875 ORTHO05D008416 3.8e-11 72.4 44 77.3
SHI45156 Sapria himalayana HOM05D006875 ORTHO05D008416 1.1e-10 70.9 76 50.0
SEGI_22250 Sequoiadendron giganteum HOM05D006875 ORTHO05D008416 3.0e-08 62.8 71 49.3
Lsat_1_v5_gn_3_43041 Lactuca sativa HOM05D006875 ORTHO05D008416 3.9e-08 62.4 187 33.2
BcaB07g30436 Brassica carinata HOM05D000059 ORTHO05D091085 1.6e-06 57.0 146 33.6
MD06G1023100 Malus domestica HOM05D006875 ORTHO05D008416 8.1e-06 54.7 145 33.8


User provided reference genes

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