Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g10310 Schrenkiella parvula HOM05D005374 ORTHO05D006534 4.9e-182 641.0 314 100.0
Thhalv10000968m.g Eutrema salsugineum HOM05D005374 ORTHO05D006534 8.4e-158 560.5 314 87.3
BcaC06g34439 Brassica carinata HOM05D005374 ORTHO05D006534 3.9e-147 525.0 315 83.5
C07p28440 Brassica napus HOM05D005374 ORTHO05D006534 3.9e-147 525.0 315 83.5
BolC7t43384H Brassica oleracea HOM05D005374 ORTHO05D006534 2.5e-146 522.3 315 83.2
BcaB07g30892 Brassica carinata HOM05D005374 ORTHO05D006534 5.3e-144 514.6 314 81.2
AL8G13440 Arabidopsis lyrata HOM05D005374 ORTHO05D006534 2.6e-143 512.3 318 81.1
AT5G45360 Arabidopsis thaliana HOM05D005374 ORTHO05D006534 1.6e-140 503.1 317 78.9
CARHR176710 Cardamine hirsuta HOM05D005374 ORTHO05D006534 1.6e-140 503.1 314 79.0
BraA06t27536Z Brassica rapa HOM05D005374 ORTHO05D006534 4.6e-140 501.5 316 80.1
Carub.0008s0275 Capsella rubella HOM05D005374 ORTHO05D006534 7.9e-140 500.7 319 79.9
C09p27770 Brassica napus HOM05D005374 ORTHO05D006534 5.7e-138 494.6 316 79.1
BcaC06g31556 Brassica carinata HOM05D005374 ORTHO05D006534 1.3e-137 493.4 315 79.4
A06p46630 Brassica napus HOM05D005374 ORTHO05D006534 4.8e-137 491.5 315 78.7
BcaC04g21776 Brassica carinata HOM05D005374 ORTHO05D006534 4.5e-135 485.0 316 78.2
A09p21700 Brassica napus HOM05D005374 ORTHO05D006534 5.0e-134 481.5 315 77.8
THA.LOC104811099 Tarenaya hassleriana HOM05D005374 ORTHO05D006534 4.5e-119 431.8 337 65.9
Aa31LG9G7650 Aethionema arabicum HOM05D005374 ORTHO05D006534 1.0e-115 420.6 335 66.9
Prupe.1G353600 Prunus persica HOM05D005374 ORTHO05D006534 2.1e-100 369.8 322 59.0
Glyma.11G090700 Glycine max HOM05D005374 ORTHO05D006534 2.0e-98 363.2 327 57.8
Thecc.03G319500 Theobroma cacao HOM05D005374 ORTHO05D006534 2.0e-98 363.2 332 57.8
arahy.Tifrunner.gnm1.ann1.B0SCIB Arachis hypogaea HOM05D005374 ORTHO05D006534 3.4e-98 362.5 332 58.1
arahy.Tifrunner.gnm1.ann1.BM6K92 Arachis hypogaea HOM05D005374 ORTHO05D006534 3.4e-98 362.5 332 58.1
Atru.chr8.2626 Acer truncatum HOM05D005374 ORTHO05D006534 1.3e-97 360.5 317 58.7
COL.COLO4_16753 Corchorus olitorius HOM05D005374 ORTHO05D006534 1.7e-97 360.1 333 58.0
Glyma.01G154100 Glycine max HOM05D005374 ORTHO05D006534 2.2e-97 359.8 326 57.7
Ca_25046_v3 Cicer arietinum L. HOM05D005374 ORTHO05D006534 2.9e-97 359.4 327 57.2
HanXRQChr17g0558081 Helianthus annuus HOM05D005374 ORTHO05D006534 3.7e-97 359.0 319 57.4
CsaV3_4G027900 Cucumis sativus L. HOM05D005374 ORTHO05D006534 1.1e-96 357.5 329 56.2
Gohir.D12G204500 Gossypium hirsutum HOM05D005374 ORTHO05D006534 1.4e-96 357.1 331 56.8
Gorai.008G219400 Gossypium raimondii HOM05D005374 ORTHO05D006534 1.4e-96 357.1 331 56.8
Psat2g145440 Pisum sativum HOM05D005374 ORTHO05D006534 1.8e-96 356.7 327 57.2
MELO3C010523.2 Cucumis melo HOM05D005374 ORTHO05D006534 2.4e-96 356.3 329 55.9
Nn1g09345 Nelumbo nucifera HOM05D005374 ORTHO05D006534 2.4e-96 356.3 318 56.9
TWI18G0367 Tripterygium wilfordii HOM05D005374 ORTHO05D006534 2.4e-96 356.3 344 56.1
Cfa012294 Carpinus fangiana HOM05D005374 ORTHO05D006534 5.4e-96 355.1 328 57.6
Medtr5g025560 Medicago truncatula HOM05D005374 ORTHO05D006534 7.0e-96 354.8 325 57.5
GSVIVG01036874001 Vitis vinifera HOM05D005374 ORTHO05D006534 1.6e-95 353.6 321 56.7
Lj2g0008244 Lotus japonicus HOM05D005374 ORTHO05D006534 3.5e-95 352.4 332 56.6
RcHm_v2.0_Chr6g0304341 Rosa chinensis HOM05D005374 ORTHO05D006534 7.8e-95 351.3 332 54.8
Nn7g37386 Nelumbo nucifera HOM05D005374 ORTHO05D006534 1.3e-94 350.5 319 55.8
Gohir.A12G201800 Gossypium hirsutum HOM05D005374 ORTHO05D006534 2.3e-94 349.7 332 55.4
Phvul.002G121600 Phaseolus vulgaris HOM05D005374 ORTHO05D006534 3.0e-94 349.4 325 57.2
TPR.G8985 Trifolium pratense HOM05D005374 ORTHO05D006534 3.0e-94 349.4 327 57.5
Duzib205G0577 Durio zibethinus HOM05D005374 ORTHO05D006534 3.9e-94 349.0 327 56.0
Lsat_1_v5_gn_6_17221 Lactuca sativa HOM05D005374 ORTHO05D006534 3.9e-94 349.0 318 56.0
TAR629G3354 Trochodendron aralioides HOM05D005374 ORTHO05D006534 5.0e-94 348.6 318 56.3
VMungo1215G0733 Vigna mungo HOM05D005374 ORTHO05D006534 6.6e-94 348.2 325 56.9
CiPaw.11G074900 Carya illinoinensis HOM05D005374 ORTHO05D006534 8.6e-94 347.8 322 57.1
Dinv37427 Davidia involucrata HOM05D005374 ORTHO05D006534 8.6e-94 347.8 349 53.0
Sed0016570 Sechium edule HOM05D005374 ORTHO05D006534 1.9e-93 346.7 326 56.4
Ciclev10012169m.g Citrus clementina HOM05D005374 ORTHO05D006534 2.5e-93 346.3 334 53.9
Hma1.2p1_1841F.1_g304960 Hydrangea macrophylla HOM05D005374 ORTHO05D006534 2.5e-93 346.3 344 52.9
Manes.15G191300 Manihot esculenta HOM05D005374 ORTHO05D006534 7.3e-93 344.7 332 54.2
CSS0021507 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 1.2e-92 344.0 336 54.8
FvH4_2g37370 Fragaria vesca HOM05D005374 ORTHO05D006534 1.2e-92 344.0 331 54.7
FAN15G3753 Fragaria x ananassa HOM05D005374 ORTHO05D006534 1.6e-92 343.6 329 55.0
Eucgr.E01146 Eucalyptus grandis HOM05D005374 ORTHO05D006534 2.1e-92 343.2 322 55.9
CAN.G884.8 Capsicum annuum HOM05D005374 ORTHO05D006534 2.8e-92 342.8 366 51.4
Lalb_Chr16g0380381 Lupinus albus HOM05D005374 ORTHO05D006534 2.8e-92 342.8 331 55.6
Lj8A3T11 Lonicera japonica HOM05D005374 ORTHO05D006534 3.6e-92 342.4 326 55.2
ECA233G3708 Erigeron canadensis HOM05D004228 ORTHO05D005137 3.1e-91 339.3 325 53.2
Cc08_g05810 Coffea canephora HOM05D005374 ORTHO05D006534 1.2e-90 337.4 254 63.8
Rhsim07G0140100 Rhododendron simsii HOM05D005374 ORTHO05D006534 3.4e-90 335.9 324 54.9
Actinidia14732 Actinidia chinensis HOM05D005374 ORTHO05D006534 7.5e-90 334.7 335 54.6
MD15G1000900 Malus domestica HOM05D005374 ORTHO05D006534 7.5e-90 334.7 338 52.4
Nitab4.5_0006438g0020 Nicotiana tabacum HOM05D005374 ORTHO05D006534 1.3e-89 334.0 390 47.7
FAN27G3004 Fragaria x ananassa HOM05D005374 ORTHO05D006534 4.9e-89 332.0 355 50.7
Oeu015544.1 Olea europaea HOM05D005374 ORTHO05D006534 4.9e-89 332.0 303 57.8
MSTRG.11863 Avicennia marina HOM05D005374 ORTHO05D006534 1.1e-88 330.9 302 56.3
Oeu046780.1 Olea europaea HOM05D005374 ORTHO05D006534 4.1e-88 328.9 299 56.9
Sabra01G0180500 Salix brachista HOM05D005374 ORTHO05D006534 5.4e-88 328.6 323 52.0
SGA_v2.0_scaffold89G27377 Striga asiatica HOM05D005374 ORTHO05D006534 5.4e-88 328.6 279 59.5
CDE02G3607 Ceratophyllum demersum HOM05D005374 ORTHO05D006534 7.0e-88 328.2 329 53.5
DCAR_004533 Daucus carota HOM05D005374 ORTHO05D006534 9.2e-88 327.8 343 49.9
Migut.A00528 Erythranthe guttata HOM05D005374 ORTHO05D006534 9.2e-88 327.8 296 56.8
CSS0025693 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 2.7e-87 326.2 319 53.3
Solyc08g075380.3 Solanum lycopersicum HOM05D005374 ORTHO05D006534 2.7e-87 326.2 304 56.2
Sopen08g024010 Solanum pennellii HOM05D005374 ORTHO05D006534 2.7e-87 326.2 304 56.2
PGR031G1488 Punica granatum HOM05D005374 ORTHO05D006534 4.6e-87 325.5 335 51.0
SalBow8G5130 Salvia bowleyana HOM05D005374 ORTHO05D006534 1.3e-86 323.9 320 53.8
QL12p004193 Quercus lobata HOM05D005374 ORTHO05D006534 3.0e-86 322.8 271 61.6
Aqoxy3G00850 Aquilegia oxysepala HOM05D005374 ORTHO05D006534 5.0e-86 322.0 322 50.6
Ah.12g058460 Amaranthus hybridus HOM05D005374 ORTHO05D006534 2.5e-85 319.7 330 50.9
ATR0568G167 Amborella trichopoda HOM05D005374 ORTHO05D006534 2.5e-85 319.7 349 50.4
PGSC0003DMG400001963 Solanum tuberosum HOM05D005374 ORTHO05D006534 3.3e-85 319.3 296 55.1
Haze_08435 Corylus avellana HOM05D005374 ORTHO05D006534 5.6e-85 318.5 324 54.3
TAR629G2486 Trochodendron aralioides HOM05D005374 ORTHO05D006534 1.2e-84 317.4 295 56.3
EL10Ac5g12585 Beta vulgaris HOM05D005374 ORTHO05D006534 2.1e-84 316.6 335 51.6
Dinv41805 Davidia involucrata HOM05D005374 ORTHO05D006534 6.2e-84 315.1 353 49.9
Peaxi162Scf00193g00717 Petunia axillaris HOM05D005374 ORTHO05D006534 6.2e-84 315.1 307 55.4
unitig_747.g21918 Utricularia gibba HOM05D005374 ORTHO05D006534 8.1e-84 314.7 300 56.0
PGSC0003DMG400018477 Solanum tuberosum HOM05D005374 ORTHO05D006534 1.8e-83 313.5 389 45.8
AUR62030411 Chenopodium quinoa HOM05D005374 ORTHO05D006534 5.2e-83 312.0 335 50.7
MBI04_g06277_MAGBIO Magnolia biondii HOM05D005374 ORTHO05D006534 1.5e-82 310.5 254 57.9
Os06g0709100 Oryza sativa ssp. japonica HOM05D005374 ORTHO05D006534 1.5e-82 310.5 259 58.3
Peaxi162Scf00045g00731 Petunia axillaris HOM05D005374 ORTHO05D006534 3.4e-82 309.3 393 45.3
Potri.004G236200 Populus trichocarpa HOM05D005374 ORTHO05D006534 5.8e-82 308.5 331 48.6
ClCG11G016070 Citrullus lanatus HOM05D005374 ORTHO05D006534 2.9e-81 306.2 350 49.1
Nitab4.5_0002244g0130 Nicotiana tabacum HOM05D005374 ORTHO05D006534 1.1e-80 304.3 290 56.2
AUR62010482 Chenopodium quinoa HOM05D005374 ORTHO05D006534 3.2e-80 302.8 324 50.9
PSO541G3556 Papaver somniferum HOM05D005374 ORTHO05D006534 1.2e-79 300.8 223 63.2
Sc22g0002240 Simmondsia chinensis HOM05D005374 ORTHO05D006534 1.2e-79 300.8 293 54.9
Duzib084G1112 Durio zibethinus HOM05D005374 ORTHO05D006534 6.6e-78 295.0 243 62.6
FAN20G2320 Fragaria x ananassa HOM05D005374 ORTHO05D006534 5.6e-77 292.0 339 47.5
Hund14303 Selenicereus undatus HOM05D005374 ORTHO05D006534 6.2e-76 288.5 310 51.6
SEGI_04185 Sequoiadendron giganteum HOM05D005374 ORTHO05D006534 2.3e-75 286.6 376 44.7
HPP92_022746 Vanilla planifolia HOM05D005374 ORTHO05D006534 7.6e-74 281.6 315 47.3
arahy.Tifrunner.gnm1.ann1.W15AHF Arachis hypogaea HOM05D005374 ORTHO05D006534 2.2e-73 280.0 210 63.3
DCAR_000721 Daucus carota HOM05D005374 ORTHO05D006534 4.9e-73 278.9 270 52.2
arahy.Tifrunner.gnm1.ann1.Y4UVSP Arachis hypogaea HOM05D005374 ORTHO05D006534 6.4e-73 278.5 207 63.8
Mapoly0004s0051 Marchantia polymorpha HOM05D005374 ORTHO05D006534 8.1e-68 261.5 322 45.3
Nitab4.5_0001175g0180 Nicotiana tabacum HOM05D005374 ORTHO05D006534 2.4e-64 250.0 386 40.4
Zm00001eb227600 Zea mays HOM05D005374 ORTHO05D006534 3.2e-64 249.6 185 63.8
Cpa.g.sc227.1 Carica papaya HOM05D005374 ORTHO05D006534 4.2e-64 249.2 159 70.4
Pp3c9_17990 Physcomitrium patens HOM05D005374 ORTHO05D006534 1.8e-59 233.8 322 41.0
SMO353G0174 Selaginella moellendorffii HOM05D005374 ORTHO05D006534 4.2e-56 222.6 262 44.7
Nitab4.5_0000030g0530 Nicotiana tabacum HOM05D005374 ORTHO05D006534 1.7e-54 217.2 259 46.3
vmacro14239 Vaccinium macrocarpon HOM05D005374 ORTHO05D006534 6.6e-54 215.3 167 58.1
SEGI_09240 Sequoiadendron giganteum HOM05D005374 ORTHO05D006534 1.1e-51 208.0 268 42.9
CAN.G998.19 Capsicum annuum HOM05D005374 ORTHO05D006534 6.9e-51 205.3 174 57.5
Actinidia26790 Actinidia chinensis HOM05D005374 ORTHO05D006534 5.1e-46 189.1 179 57.5
CBR_g46850 Chara braunii HOM05D005374 ORTHO05D006534 6.7e-46 188.7 372 33.6
Eucgr.G01888 Eucalyptus grandis HOM05D005374 ORTHO05D006534 3.0e-38 163.3 150 56.7
CSS0023834 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 5.3e-35 152.5 153 50.3
MCO16G622 Micromonas commoda HOM05D005374 ORTHO05D006534 4.6e-31 139.4 311 31.8
CSS0042781 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 1.6e-28 131.0 152 45.4
Eucgr.B01591 Eucalyptus grandis HOM05D005374 ORTHO05D006534 1.2e-26 124.8 80 70.0
Cpa.g.c37165 Carica papaya HOM05D005374 ORTHO05D006534 1.4e-24 117.9 122 57.4
arahy.Tifrunner.gnm1.ann1.5XIH37 Arachis hypogaea HOM05D005374 ORTHO05D006534 6.3e-20 102.4 114 47.4
vmacro14240 Vaccinium macrocarpon HOM05D005374 ORTHO05D006534 7.7e-18 95.5 116 51.7
MD08G1001600 Malus domestica HOM05D005374 ORTHO05D006534 2.9e-17 93.6 96 46.9
THA.LOC104811124 Tarenaya hassleriana HOM05D005374 ORTHO05D006534 1.9e-16 90.9 90 57.8
Nn1g08747 Nelumbo nucifera HOM05D005374 ORTHO05D006534 3.9e-14 83.2 75 48.0
CAN.G1511.1 Capsicum annuum HOM05D005374 ORTHO05D006534 1.5e-13 81.3 70 58.6
arahy.Tifrunner.gnm1.ann1.FJF7PC Arachis hypogaea HOM05D005374 ORTHO05D006534 3.1e-11 73.6 53 67.9
Actinidia26789 Actinidia chinensis HOM05D005374 ORTHO05D006534 1.1e-08 65.1 100 39.0
arahy.Tifrunner.gnm1.ann1.ZNC245 Arachis hypogaea HOM05D005374 ORTHO05D006534 5.5e-08 62.8 45 60.0
Cre01.g021200 Chlamydomonas reinhardtii HOM05D005374 ORTHO05D006534 6.7e-06 55.8 376 19.1


User provided reference genes

Program Settings