Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp2g09520 Schrenkiella parvula HOM05D005227 ORTHO05D006379 2.5e-50 201.8 103 100.0
A02p28550 Brassica napus HOM05D005227 ORTHO05D006379 1.8e-48 195.7 103 96.1
BraA02t07892Z Brassica rapa HOM05D005227 ORTHO05D006379 1.8e-48 195.7 103 96.1
BcaB07g30501 Brassica carinata HOM05D005227 ORTHO05D006379 1.2e-47 193.0 103 94.2
BolC2t10561H Brassica oleracea HOM05D005227 ORTHO05D006379 1.5e-47 192.6 102 95.1
BcaC06g31592 Brassica carinata HOM05D005227 ORTHO05D006379 2.0e-47 192.2 103 94.2
BcaC06g31593 Brassica carinata HOM05D005227 ORTHO05D006379 2.0e-47 192.2 103 94.2
BcaC06g34520 Brassica carinata HOM05D005227 ORTHO05D006379 2.0e-47 192.2 103 93.2
C07p27610 Brassica napus HOM05D005227 ORTHO05D006379 2.0e-47 192.2 103 93.2
A09p21240 Brassica napus HOM05D005227 ORTHO05D006379 2.6e-47 191.8 103 94.2
BolC7t43294H Brassica oleracea HOM05D003109 ORTHO05D003578 2.6e-47 191.8 102 93.1
BraA09t37729Z Brassica rapa HOM05D005227 ORTHO05D006379 2.6e-47 191.8 103 94.2
BcaC03g16691 Brassica carinata HOM05D005227 ORTHO05D006379 4.4e-47 191.0 102 94.1
Thhalv10001080m.g Eutrema salsugineum HOM05D005227 ORTHO05D006379 1.7e-46 189.1 103 93.2
BcaB07g30937 Brassica carinata HOM05D005227 ORTHO05D006379 2.9e-46 188.3 103 93.2
BraA06t27572Z Brassica rapa HOM05D005227 ORTHO05D006379 4.9e-46 187.6 103 92.2
AT5G44710 Arabidopsis thaliana HOM05D005227 ORTHO05D006379 1.9e-45 185.7 103 91.3
Carub.0001s3436 Capsella rubella HOM05D005227 ORTHO05D006379 1.9e-45 185.7 103 91.3
AL8G14830 Arabidopsis lyrata HOM05D005227 ORTHO05D006379 2.0e-44 182.2 103 89.3
Carub.0008s0355 Capsella rubella HOM05D005227 ORTHO05D006379 1.3e-43 179.5 103 87.4
CARHR178190 Cardamine hirsuta HOM05D005227 ORTHO05D006379 1.7e-43 179.1 102 88.2
Gohir.A11G165700 Gossypium hirsutum HOM05D005227 ORTHO05D006379 3.1e-40 168.3 103 80.6
Gohir.D11G171900 Gossypium hirsutum HOM05D005227 ORTHO05D006379 5.2e-40 167.5 103 79.6
Gorai.007G184300 Gossypium raimondii HOM05D005227 ORTHO05D006379 5.2e-40 167.5 103 79.6
THA.LOC104806226 Tarenaya hassleriana HOM05D005227 ORTHO05D006379 1.2e-39 166.4 103 79.6
Duzib084G1247 Durio zibethinus HOM05D005227 ORTHO05D006379 4.4e-39 164.5 103 79.6
Prupe.1G101300 Prunus persica HOM05D005227 ORTHO05D006379 5.8e-39 164.1 102 77.5
Lalb_Chr10g0097141 Lupinus albus HOM05D005227 ORTHO05D006379 7.5e-39 163.7 103 79.6
Thecc.03G046200 Theobroma cacao HOM05D005227 ORTHO05D006379 2.2e-38 162.2 103 77.7
ClCG03G004140 Citrullus lanatus HOM05D005227 ORTHO05D006379 6.4e-38 160.6 103 78.6
Lj3g0019179 Lotus japonicus HOM05D005227 ORTHO05D006379 6.4e-38 160.6 103 76.7
Aa31LG9G8450 Aethionema arabicum HOM05D003109 ORTHO05D003578 1.4e-37 159.5 99 82.8
Cpa.g.c40334 Carica papaya HOM05D005227 ORTHO05D006379 1.4e-37 159.5 103 78.6
MELO3C002397.2 Cucumis melo HOM05D005227 ORTHO05D006379 3.2e-37 158.3 102 77.5
GSVIVG01012160001 Vitis vinifera HOM05D005227 ORTHO05D006379 4.1e-37 157.9 103 77.7
CSS0013199 Camellia sinensis var. sinensis HOM05D005227 ORTHO05D006379 7.0e-37 157.1 103 76.7
CsaV3_1G010070 Cucumis sativus L. HOM05D005227 ORTHO05D006379 7.0e-37 157.1 103 76.7
Lalb_Chr17g0339811 Lupinus albus HOM05D005227 ORTHO05D006379 9.2e-37 156.8 103 74.8
arahy.Tifrunner.gnm1.ann1.59GI1K Arachis hypogaea HOM05D005227 ORTHO05D006379 1.2e-36 156.4 100 79.0
arahy.Tifrunner.gnm1.ann1.GL2DWM Arachis hypogaea HOM05D005227 ORTHO05D006379 1.2e-36 156.4 100 79.0
Glyma.07G072800 Glycine max HOM05D005227 ORTHO05D006379 1.2e-36 156.4 103 73.8
Duzib205G0364 Durio zibethinus HOM05D005227 ORTHO05D006379 1.6e-36 156.0 103 73.8
QL08p045548 Quercus lobata HOM05D005227 ORTHO05D006379 1.6e-36 156.0 102 74.5
Atru.chr9.939 Acer truncatum HOM05D005227 ORTHO05D006379 2.7e-36 155.2 103 74.8
COL.COLO4_36891 Corchorus olitorius HOM05D005227 ORTHO05D006379 2.7e-36 155.2 103 75.7
Sed0019581 Sechium edule HOM05D005227 ORTHO05D006379 2.7e-36 155.2 103 75.7
Atru.chr8.505 Acer truncatum HOM05D005227 ORTHO05D006379 3.5e-36 154.8 103 74.8
Nn7g38372 Nelumbo nucifera HOM05D005227 ORTHO05D006379 3.5e-36 154.8 101 75.2
QL07p000144 Quercus lobata HOM05D005227 ORTHO05D006379 3.5e-36 154.8 102 73.5
TWI15G1171 Tripterygium wilfordii HOM05D005227 ORTHO05D006379 3.5e-36 154.8 103 76.7
Glyma.03G013100 Glycine max HOM05D005227 ORTHO05D006379 4.6e-36 154.5 103 73.8
TWI81G0571 Tripterygium wilfordii HOM05D005227 ORTHO05D006379 4.6e-36 154.5 103 76.7
Sed0010668 Sechium edule HOM05D005227 ORTHO05D006379 6.0e-36 154.1 103 74.8
Eucgr.D00008 Eucalyptus grandis HOM05D005227 ORTHO05D006379 1.0e-35 153.3 100 73.0
PGR004G2312 Punica granatum HOM05D005227 ORTHO05D006379 1.3e-35 152.9 103 73.8
Ciclev10017275m.g Citrus clementina HOM05D005227 ORTHO05D006379 1.7e-35 152.5 100 75.0
CiPaw.09G138800 Carya illinoinensis HOM05D005227 ORTHO05D006379 2.3e-35 152.1 102 72.5
Dinv32750 Davidia involucrata HOM05D005227 ORTHO05D006379 2.3e-35 152.1 103 73.8
arahy.Tifrunner.gnm1.ann1.BUN8CC Arachis hypogaea HOM05D005227 ORTHO05D006379 3.0e-35 151.8 102 75.5
Actinidia33652 Actinidia chinensis HOM05D005227 ORTHO05D006379 3.9e-35 151.4 103 73.8
Phvul.010G097600 Phaseolus vulgaris HOM05D005227 ORTHO05D006379 3.9e-35 151.4 99 73.7
Aqoxy1G01370 Aquilegia oxysepala HOM05D005227 ORTHO05D006379 5.1e-35 151.0 98 74.5
PGR142G0063 Punica granatum HOM05D005227 ORTHO05D006379 5.1e-35 151.0 103 72.8
Cfa001143 Carpinus fangiana HOM05D005227 ORTHO05D006379 6.6e-35 150.6 102 72.5
Dinv26307 Davidia involucrata HOM05D005227 ORTHO05D006379 8.6e-35 150.2 103 72.8
MD05G1245000 Malus domestica HOM05D005227 ORTHO05D006379 1.1e-34 149.8 94 76.6
Haze_05241 Corylus avellana HOM05D005227 ORTHO05D006379 1.9e-34 149.1 102 72.5
Medtr8g031320 Medicago truncatula HOM05D005227 ORTHO05D006379 1.9e-34 149.1 103 68.9
CAN.G585.8 Capsicum annuum HOM05D005227 ORTHO05D006379 2.5e-34 148.7 103 71.8
ATR0752G166 Amborella trichopoda HOM05D005227 ORTHO05D006379 3.3e-34 148.3 99 73.7
Cc09_g04960 Coffea canephora HOM05D005227 ORTHO05D006379 4.3e-34 147.9 102 70.6
MD10G1226300 Malus domestica HOM05D005227 ORTHO05D006379 5.6e-34 147.5 94 76.6
Migut.D00502 Erythranthe guttata HOM05D005227 ORTHO05D006379 7.3e-34 147.1 99 72.7
TAR627G1207 Trochodendron aralioides HOM05D005227 ORTHO05D006379 7.3e-34 147.1 103 70.9
Manes.03G071400 Manihot esculenta HOM05D005227 ORTHO05D006379 9.5e-34 146.7 102 70.6
SGA_v2.0_scaffold1G00678 Striga asiatica HOM05D005227 ORTHO05D006379 9.5e-34 146.7 99 71.7
HPP92_006340 Vanilla planifolia HOM05D005227 ORTHO05D006379 2.1e-33 145.6 99 73.7
PGSC0003DMG400031097 Solanum tuberosum HOM05D005227 ORTHO05D006379 4.7e-33 144.4 103 69.9
TPR.G4382 Trifolium pratense HOM05D005227 ORTHO05D006379 4.7e-33 144.4 103 68.9
EL10Ac4g09705 Beta vulgaris HOM05D005227 ORTHO05D006379 6.2e-33 144.1 99 70.7
Cfa001148 Carpinus fangiana HOM05D005227 ORTHO05D006379 8.1e-33 143.7 102 69.6
Peaxi162Scf00890g00011 Petunia axillaris HOM05D005227 ORTHO05D006379 8.1e-33 143.7 102 67.6
Sc15g0005680 Simmondsia chinensis HOM05D005227 ORTHO05D006379 8.1e-33 143.7 99 69.7
RcHm_v2.0_Chr3g0492041 Rosa chinensis HOM05D005227 ORTHO05D006379 1.1e-32 143.3 101 68.3
TPR.G1285 Trifolium pratense HOM05D005227 ORTHO05D006379 1.1e-32 143.3 103 68.0
Sopen07g029430 Solanum pennellii HOM05D005227 ORTHO05D006379 1.8e-32 142.5 103 68.9
CANSAT21G1070 Cannabis sativa HOM05D005227 ORTHO05D006379 2.3e-32 142.1 100 67.0
Zm00001eb354280 Zea mays HOM05D005227 ORTHO05D006379 2.3e-32 142.1 102 68.6
MSTRG.21442 Avicennia marina HOM05D005227 ORTHO05D006379 3.1e-32 141.7 100 71.0
FvH4_3g13100 Fragaria vesca HOM05D005227 ORTHO05D006379 3.1e-32 141.7 101 68.3
FAN11G3694 Fragaria x ananassa HOM05D005227 ORTHO05D006379 3.1e-32 141.7 101 68.3
FAN16G1292 Fragaria x ananassa HOM05D005227 ORTHO05D006379 3.1e-32 141.7 101 68.3
Glyma.03G084100 Glycine max HOM05D005227 ORTHO05D006379 3.1e-32 141.7 103 68.0
RcHm_v2.0_Chr5g0021361 Rosa chinensis HOM05D005227 ORTHO05D006379 4.0e-32 141.4 101 67.3
Peaxi162Scf00254g00421 Petunia axillaris HOM05D005227 ORTHO05D006379 6.8e-32 140.6 97 69.1
AUR62042297 Chenopodium quinoa HOM05D005227 ORTHO05D006379 8.9e-32 140.2 102 67.6
FAN21G2110 Fragaria x ananassa HOM05D005227 ORTHO05D006379 8.9e-32 140.2 101 67.3
Solyc07g056070.2 Solanum lycopersicum HOM05D005227 ORTHO05D006379 8.9e-32 140.2 103 67.0
Nitab4.5_0000743g0160 Nicotiana tabacum HOM05D005227 ORTHO05D006379 1.2e-31 139.8 103 67.0
Os05g0148300 Oryza sativa ssp. japonica HOM05D005227 ORTHO05D006379 1.2e-31 139.8 100 69.0
SalBow2G2250 Salvia bowleyana HOM05D005227 ORTHO05D006379 1.5e-31 139.4 100 67.0
Sopen07g027180 Solanum pennellii HOM05D005227 ORTHO05D006379 1.5e-31 139.4 103 66.0
PGSC0003DMG401020444 Solanum tuberosum HOM05D005227 ORTHO05D006379 1.5e-31 139.4 103 66.0
HanXRQChr01g0006241 Helianthus annuus HOM05D005227 ORTHO05D006379 4.4e-31 137.9 103 67.0
Solyc07g055030.1 Solanum lycopersicum HOM05D005227 ORTHO05D006379 4.4e-31 137.9 103 65.0
Sabra03G0112200 Salix brachista HOM05D005861 ORTHO05D007151 5.8e-31 137.5 99 69.7
unitig_8.g3748 Utricularia gibba HOM05D005227 ORTHO05D006379 5.8e-31 137.5 103 66.0
HanXRQChr01g0006251 Helianthus annuus HOM05D005227 ORTHO05D006379 7.5e-31 137.1 99 68.7
Potri.003G155000 Populus trichocarpa HOM05D005227 ORTHO05D006379 7.5e-31 137.1 99 69.7
Ciclev10010372m.g Citrus clementina HOM05D005227 ORTHO05D006379 9.9e-31 136.7 100 68.0
ECA248G3549 Erigeron canadensis HOM05D005227 ORTHO05D006379 2.9e-30 135.2 103 67.0
Lsat_1_v5_gn_5_150700 Lactuca sativa HOM05D005227 ORTHO05D006379 3.7e-30 134.8 99 68.7
Rhsim13G0134700 Rhododendron simsii HOM05D005227 ORTHO05D006379 8.3e-30 133.7 98 68.4
RhsimUnG0177600 Rhododendron simsii HOM05D005227 ORTHO05D006379 8.3e-30 133.7 98 68.4
CDE05G2352 Ceratophyllum demersum HOM05D005227 ORTHO05D006379 2.4e-29 132.1 96 67.7
Oeu041343.1 Olea europaea HOM05D005227 ORTHO05D006379 3.2e-29 131.7 98 66.3
PSO832G3358 Papaver somniferum HOM05D005227 ORTHO05D006379 3.2e-29 131.7 99 70.7
Nitab4.5_0001904g0080 Nicotiana tabacum HOM05D005227 ORTHO05D006379 7.1e-29 130.6 103 63.1
PSO198G0154 Papaver somniferum HOM05D005227 ORTHO05D006379 9.2e-29 130.2 99 69.7
PSO541G1361 Papaver somniferum HOM05D005227 ORTHO05D006379 1.6e-28 129.4 99 69.7
BcaC04g21823 Brassica carinata HOM05D005227 ORTHO05D006379 1.0e-27 126.7 103 71.8
PSO541G0222 Papaver somniferum HOM05D005227 ORTHO05D006379 1.3e-27 126.3 99 68.7
PSO675G1867 Papaver somniferum HOM05D005227 ORTHO05D006379 1.3e-27 126.3 99 68.7
C02p45310 Brassica napus HOM05D005227 ORTHO05D006379 9.5e-26 120.2 62 93.5
CSS0027348 Camellia sinensis var. sinensis HOM05D005227 ORTHO05D006379 1.2e-23 113.2 105 61.0
CSS0030749 Camellia sinensis var. sinensis HOM05D005227 ORTHO05D006379 1.5e-23 112.8 104 61.5
Ah.06g187780 Amaranthus hybridus HOM05D005227 ORTHO05D006379 2.6e-23 112.1 160 42.5
DCAR_003751 Daucus carota HOM05D005861 ORTHO05D007151 3.8e-22 108.2 77 63.6
Dinv26329 Davidia involucrata HOM05D005227 ORTHO05D006379 1.9e-21 105.9 74 67.6
Ca_23647_v3 Cicer arietinum L. HOM05D005227 ORTHO05D006379 3.2e-21 105.1 73 64.4
arahy.Tifrunner.gnm1.ann1.RE1YA1 Arachis hypogaea HOM05D005227 ORTHO05D006379 1.2e-20 103.2 72 68.1
Psat4g202600 Pisum sativum HOM05D005227 ORTHO05D006379 4.6e-20 101.3 73 61.6
Psat0s277g0080 Pisum sativum HOM05D005227 ORTHO05D006379 6.0e-20 100.9 73 60.3
VMungo0859G0001 Vigna mungo HOM05D005227 ORTHO05D006379 1.3e-19 99.8 69 63.8
CDE02G3990 Ceratophyllum demersum HOM05D001323 ORTHO05D001223 6.6e-19 97.4 81 59.3
Pp3c15_4210 Physcomitrium patens HOM05D005227 ORTHO05D006379 6.6e-19 97.4 86 59.3
AUR62040506 Chenopodium quinoa HOM05D005227 ORTHO05D006379 8.7e-19 97.1 69 63.8
AUR62035552 Chenopodium quinoa HOM05D005227 ORTHO05D006379 1.9e-18 95.9 73 64.4
FAN25G2025 Fragaria x ananassa HOM05D005227 ORTHO05D006379 5.6e-18 94.4 90 54.4
AagrBONN_evm.TU.Sc2ySwM_228.4328 Anthoceros agrestis HOM05D005227 ORTHO05D006379 6.2e-17 90.9 84 56.0
C09p27040 Brassica napus HOM05D005227 ORTHO05D006379 4.4e-15 84.7 75 62.7
Mapoly0090s0044 Marchantia polymorpha HOM05D005227 ORTHO05D006379 1.4e-13 79.7 83 50.6
HPP92_027864 Vanilla planifolia HOM05D005227 ORTHO05D006379 2.4e-13 79.0 44 79.5
Ciclev10006880m.g Citrus clementina HOM05D005227 ORTHO05D006379 2.1e-12 75.9 98 48.0
Lsat_1_v5_gn_4_103780 Lactuca sativa HOM05D005227 ORTHO05D006379 4.8e-09 64.7 58 51.7
Cfa022274 Carpinus fangiana HOM05D005227 ORTHO05D006379 4.9e-06 54.7 89 37.1
MCO07G459 Micromonas commoda HOM05D005227 ORTHO05D006379 8.4e-06 53.9 84 44.0


User provided reference genes

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